Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01995 and BWI76_RS02000 are separated by 84 nucleotides BWI76_RS02000 and BWI76_RS02005 are separated by 258 nucleotides BWI76_RS02005 and BWI76_RS02010 are separated by 36 nucleotides BWI76_RS02010 and BWI76_RS02015 are separated by 151 nucleotides
BWI76_RS01995: BWI76_RS01995 - AraC family transcriptional regulator, at 410,724 to 411,053
_RS01995
BWI76_RS02000: BWI76_RS02000 - transcriptional regulator, at 411,138 to 411,596
_RS02000
BWI76_RS02005: BWI76_RS02005 - glutathione S-transferase, at 411,855 to 412,523
_RS02005
BWI76_RS02010: BWI76_RS02010 - hypothetical protein, at 412,560 to 412,760
_RS02010
BWI76_RS02015: BWI76_RS02015 - NCS2 family permease, at 412,912 to 414,261
_RS02015
Position (kb) 411
412
413 Strain fitness (log2 ratio) -2
-1
0
1 at 410.915 kb on - strand, within BWI76_RS01995 at 411.091 kb on - strand at 411.314 kb on + strand, within BWI76_RS02000 at 411.385 kb on + strand, within BWI76_RS02000 at 411.393 kb on - strand, within BWI76_RS02000 at 411.393 kb on - strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.699 kb on + strand at 411.699 kb on + strand at 411.699 kb on + strand at 411.699 kb on + strand at 411.702 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.727 kb on + strand at 411.864 kb on - strand at 411.943 kb on - strand, within BWI76_RS02005 at 411.951 kb on - strand, within BWI76_RS02005 at 411.953 kb on + strand, within BWI76_RS02005 at 411.959 kb on + strand, within BWI76_RS02005 at 412.056 kb on + strand, within BWI76_RS02005 at 412.078 kb on + strand, within BWI76_RS02005 at 412.085 kb on - strand, within BWI76_RS02005 at 412.145 kb on + strand, within BWI76_RS02005 at 412.150 kb on + strand, within BWI76_RS02005 at 412.213 kb on - strand, within BWI76_RS02005 at 412.253 kb on + strand, within BWI76_RS02005 at 412.261 kb on - strand, within BWI76_RS02005 at 412.285 kb on - strand, within BWI76_RS02005 at 412.322 kb on + strand, within BWI76_RS02005 at 412.461 kb on - strand at 412.463 kb on + strand at 412.863 kb on - strand at 413.015 kb on + strand at 413.016 kb on - strand at 413.130 kb on + strand, within BWI76_RS02015 at 413.138 kb on - strand, within BWI76_RS02015 at 413.390 kb on + strand, within BWI76_RS02015
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 410,915 - BWI76_RS01995 0.58 -2.4 411,091 - -1.4 411,314 + BWI76_RS02000 0.38 -0.5 411,385 + BWI76_RS02000 0.54 -0.9 411,393 - BWI76_RS02000 0.56 -1.4 411,393 - BWI76_RS02000 0.56 -1.0 411,454 + BWI76_RS02000 0.69 -0.9 411,454 + BWI76_RS02000 0.69 -0.6 411,454 + BWI76_RS02000 0.69 -2.0 411,454 + BWI76_RS02000 0.69 -0.9 411,454 + BWI76_RS02000 0.69 -1.5 411,462 - BWI76_RS02000 0.71 -0.1 411,462 - BWI76_RS02000 0.71 +0.7 411,462 - BWI76_RS02000 0.71 +0.2 411,462 - BWI76_RS02000 0.71 -1.9 411,699 + -0.2 411,699 + +0.2 411,699 + +0.2 411,699 + -0.4 411,702 - -1.3 411,707 - +0.8 411,707 - +0.8 411,707 - -0.3 411,707 - +1.3 411,727 + +0.8 411,864 - +0.5 411,943 - BWI76_RS02005 0.13 -1.4 411,951 - BWI76_RS02005 0.14 -0.4 411,953 + BWI76_RS02005 0.15 -0.1 411,959 + BWI76_RS02005 0.16 +0.0 412,056 + BWI76_RS02005 0.30 -0.0 412,078 + BWI76_RS02005 0.33 -0.5 412,085 - BWI76_RS02005 0.34 +0.1 412,145 + BWI76_RS02005 0.43 -1.0 412,150 + BWI76_RS02005 0.44 -0.5 412,213 - BWI76_RS02005 0.54 +0.5 412,253 + BWI76_RS02005 0.59 +0.2 412,261 - BWI76_RS02005 0.61 -0.7 412,285 - BWI76_RS02005 0.64 -1.4 412,322 + BWI76_RS02005 0.70 +0.2 412,461 - -0.3 412,463 + +0.1 412,863 - -0.1 413,015 + -0.1 413,016 - +0.4 413,130 + BWI76_RS02015 0.16 -0.5 413,138 - BWI76_RS02015 0.17 +0.5 413,390 + BWI76_RS02015 0.35 +0.1
Or see this region's nucleotide sequence