Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0833

Experiment: BHIS with 5-Fluorouracil 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0832 and BT0833 are separated by 267 nucleotidesBT0833 and BT0834 are separated by 178 nucleotides BT0832: BT0832 - putative phosphoserine phosphatase (NCBI ptt file), at 1,027,033 to 1,028,262 BT0832 BT0833: BT0833 - conserved hypothetical protein (NCBI ptt file), at 1,028,530 to 1,029,036 BT0833 BT0834: BT0834 - conserved hypothetical protein (NCBI ptt file), at 1,029,215 to 1,030,312 BT0834 Position (kb) 1028 1029 1030Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1027.589 kb on - strand, within BT0832at 1027.600 kb on + strand, within BT0832at 1027.691 kb on + strand, within BT0832at 1027.691 kb on + strand, within BT0832at 1027.698 kb on + strand, within BT0832at 1027.699 kb on - strand, within BT0832at 1027.957 kb on + strand, within BT0832at 1027.959 kb on + strand, within BT0832at 1027.959 kb on + strand, within BT0832at 1027.981 kb on - strand, within BT0832at 1027.981 kb on - strand, within BT0832at 1028.070 kb on + strand, within BT0832at 1028.168 kb on + strandat 1028.169 kb on - strandat 1028.180 kb on - strandat 1028.200 kb on - strandat 1028.490 kb on + strandat 1028.512 kb on + strandat 1028.539 kb on + strandat 1028.703 kb on + strand, within BT0833at 1028.708 kb on - strand, within BT0833at 1028.867 kb on + strand, within BT0833at 1028.872 kb on - strand, within BT0833at 1028.980 kb on - strand, within BT0833at 1029.020 kb on + strandat 1029.020 kb on + strandat 1029.021 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with 5-Fluorouracil 0.1 mM
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1,027,589 - BT0832 0.45 -0.6
1,027,600 + BT0832 0.46 +0.6
1,027,691 + BT0832 0.53 -3.4
1,027,691 + BT0832 0.53 +1.2
1,027,698 + BT0832 0.54 -1.9
1,027,699 - BT0832 0.54 -0.4
1,027,957 + BT0832 0.75 -3.2
1,027,959 + BT0832 0.75 +0.6
1,027,959 + BT0832 0.75 -2.5
1,027,981 - BT0832 0.77 +1.2
1,027,981 - BT0832 0.77 -1.9
1,028,070 + BT0832 0.84 +0.2
1,028,168 + +0.3
1,028,169 - +2.2
1,028,180 - +1.4
1,028,200 - -2.7
1,028,490 + +2.6
1,028,512 + -1.0
1,028,539 + +0.9
1,028,703 + BT0833 0.34 -0.4
1,028,708 - BT0833 0.35 +3.7
1,028,867 + BT0833 0.66 +1.1
1,028,872 - BT0833 0.67 -0.1
1,028,980 - BT0833 0.89 +2.7
1,029,020 + -0.4
1,029,020 + +2.7
1,029,021 - -0.8

Or see this region's nucleotide sequence