Experiment: MoLS4 with L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0902 and DVU0903 are separated by 4 nucleotides DVU0903 and recJ are separated by 56 nucleotides recJ and lipA are separated by 98 nucleotides lipA and lipB overlap by 71 nucleotides
DVU0902: DVU0902 - TPR domain protein (TIGR), at 993,889 to 994,746
DVU0902
DVU0903: DVU0903 - HD domain protein (TIGR), at 994,751 to 995,608
DVU0903
DVU0904: recJ - single-stranded-DNA-specific exonuclease RecJ (TIGR), at 995,665 to 997,380
recJ
DVU0905: lipA - lipoic acid synthetase (TIGR), at 997,479 to 998,375
lipA
DVU0906: lipB - lipoate-protein ligase B (TIGR), at 998,305 to 998,961
lipB
Position (kb) 995
996
997
998 Strain fitness (log2 ratio) -2
-1
0
1 at 994.709 kb on - strand at 994.711 kb on + strand at 994.720 kb on + strand at 994.725 kb on - strand at 994.743 kb on - strand at 994.840 kb on - strand, within DVU0903 at 994.840 kb on - strand, within DVU0903 at 995.099 kb on + strand, within DVU0903 at 995.112 kb on - strand, within DVU0903 at 995.167 kb on + strand, within DVU0903 at 995.167 kb on + strand, within DVU0903 at 995.175 kb on - strand, within DVU0903 at 995.175 kb on - strand, within DVU0903 at 995.223 kb on + strand, within DVU0903 at 995.223 kb on + strand, within DVU0903 at 995.231 kb on - strand, within DVU0903 at 995.269 kb on + strand, within DVU0903 at 995.283 kb on + strand, within DVU0903 at 995.325 kb on + strand, within DVU0903 at 995.338 kb on - strand, within DVU0903 at 995.400 kb on + strand, within DVU0903 at 995.541 kb on - strand at 995.548 kb on + strand at 995.593 kb on - strand at 995.627 kb on - strand at 995.634 kb on - strand at 995.683 kb on - strand at 995.961 kb on - strand, within recJ at 996.290 kb on - strand, within recJ at 996.334 kb on + strand, within recJ at 996.342 kb on - strand, within recJ at 996.385 kb on + strand, within recJ at 996.393 kb on - strand, within recJ at 996.513 kb on + strand, within recJ at 996.658 kb on - strand, within recJ at 996.712 kb on + strand, within recJ at 996.797 kb on + strand, within recJ at 996.807 kb on - strand, within recJ at 996.898 kb on - strand, within recJ at 996.984 kb on - strand, within recJ at 997.200 kb on - strand, within recJ at 997.385 kb on + strand at 997.539 kb on + strand at 997.545 kb on + strand at 997.668 kb on - strand, within lipA at 997.795 kb on + strand, within lipA at 997.803 kb on - strand, within lipA at 997.813 kb on - strand, within lipA at 997.813 kb on - strand, within lipA at 997.879 kb on - strand, within lipA at 997.907 kb on - strand, within lipA at 997.968 kb on + strand, within lipA at 997.976 kb on - strand, within lipA at 997.986 kb on - strand, within lipA at 997.986 kb on - strand, within lipA at 998.021 kb on - strand, within lipA at 998.069 kb on + strand, within lipA at 998.252 kb on - strand, within lipA at 998.264 kb on - strand, within lipA at 998.277 kb on - strand, within lipA at 998.277 kb on - strand, within lipA at 998.277 kb on - strand, within lipA
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Phenylalanine (N) remove 994,709 - -0.1 994,711 + -0.2 994,720 + +0.1 994,725 - -0.5 994,743 - -0.2 994,840 - DVU0903 0.10 -1.0 994,840 - DVU0903 0.10 +0.3 995,099 + DVU0903 0.41 +1.4 995,112 - DVU0903 0.42 +0.1 995,167 + DVU0903 0.48 -0.6 995,167 + DVU0903 0.48 -0.0 995,175 - DVU0903 0.49 +0.6 995,175 - DVU0903 0.49 -0.2 995,223 + DVU0903 0.55 -0.1 995,223 + DVU0903 0.55 +0.1 995,231 - DVU0903 0.56 +0.2 995,269 + DVU0903 0.60 -0.2 995,283 + DVU0903 0.62 -0.3 995,325 + DVU0903 0.67 -0.1 995,338 - DVU0903 0.68 -0.3 995,400 + DVU0903 0.76 -0.4 995,541 - +0.3 995,548 + -0.4 995,593 - +0.2 995,627 - -0.1 995,634 - -0.0 995,683 - -0.8 995,961 - recJ DVU0904 0.17 -2.3 996,290 - recJ DVU0904 0.36 -0.8 996,334 + recJ DVU0904 0.39 -0.2 996,342 - recJ DVU0904 0.39 -0.5 996,385 + recJ DVU0904 0.42 -0.4 996,393 - recJ DVU0904 0.42 -1.1 996,513 + recJ DVU0904 0.49 -2.5 996,658 - recJ DVU0904 0.58 -0.5 996,712 + recJ DVU0904 0.61 -1.1 996,797 + recJ DVU0904 0.66 -1.1 996,807 - recJ DVU0904 0.67 -0.4 996,898 - recJ DVU0904 0.72 -0.6 996,984 - recJ DVU0904 0.77 -1.0 997,200 - recJ DVU0904 0.89 -1.2 997,385 + -0.1 997,539 + -0.3 997,545 + -0.1 997,668 - lipA DVU0905 0.21 -0.7 997,795 + lipA DVU0905 0.35 +0.3 997,803 - lipA DVU0905 0.36 -0.9 997,813 - lipA DVU0905 0.37 -0.8 997,813 - lipA DVU0905 0.37 +0.0 997,879 - lipA DVU0905 0.45 -0.3 997,907 - lipA DVU0905 0.48 -0.3 997,968 + lipA DVU0905 0.55 -0.8 997,976 - lipA DVU0905 0.55 -1.0 997,986 - lipA DVU0905 0.57 -1.3 997,986 - lipA DVU0905 0.57 +0.1 998,021 - lipA DVU0905 0.60 -0.7 998,069 + lipA DVU0905 0.66 -0.5 998,252 - lipA DVU0905 0.86 -2.0 998,264 - lipA DVU0905 0.88 -0.9 998,277 - lipA DVU0905 0.89 +0.0 998,277 - lipA DVU0905 0.89 -1.0 998,277 - lipA DVU0905 0.89 +0.4
Or see this region's nucleotide sequence