Experiment: BG11 with Chlorite 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prkE and Synpcc7942_0601 are separated by 69 nucleotides Synpcc7942_0601 and Synpcc7942_0602 are separated by 455 nucleotides Synpcc7942_0602 and glgC are separated by 4 nucleotides
Synpcc7942_0600: prkE - serine/threonine protein kinase, at 588,528 to 590,060
prkE
Synpcc7942_0601: Synpcc7942_0601 - hypothetical protein, at 590,130 to 590,390
_0601
Synpcc7942_0602: Synpcc7942_0602 - hypothetical protein, at 590,846 to 591,454
_0602
Synpcc7942_0603: glgC - glucose-1-phosphate adenylyltransferase, at 591,459 to 592,751
glgC
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 589.849 kb on - strand, within prkE at 589.856 kb on + strand, within prkE at 589.863 kb on + strand, within prkE at 589.880 kb on - strand, within prkE at 589.915 kb on + strand at 589.962 kb on + strand at 589.962 kb on + strand at 589.977 kb on + strand at 589.985 kb on - strand at 589.993 kb on - strand at 590.001 kb on + strand at 590.008 kb on - strand at 590.011 kb on + strand at 590.021 kb on + strand at 590.048 kb on + strand at 590.056 kb on + strand at 590.058 kb on + strand at 590.068 kb on + strand at 590.068 kb on + strand at 590.071 kb on - strand at 590.076 kb on - strand at 590.076 kb on - strand at 590.081 kb on - strand at 590.101 kb on + strand at 590.147 kb on - strand at 590.153 kb on + strand at 590.161 kb on - strand, within Synpcc7942_0601 at 590.182 kb on - strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.236 kb on + strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.254 kb on + strand, within Synpcc7942_0601 at 590.254 kb on + strand, within Synpcc7942_0601 at 590.299 kb on - strand, within Synpcc7942_0601 at 590.371 kb on + strand at 590.402 kb on - strand at 590.402 kb on - strand at 590.446 kb on + strand at 590.562 kb on + strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.598 kb on + strand at 590.828 kb on + strand at 590.865 kb on + strand at 590.902 kb on + strand at 590.974 kb on + strand, within Synpcc7942_0602 at 591.002 kb on + strand, within Synpcc7942_0602 at 591.002 kb on - strand, within Synpcc7942_0602 at 591.004 kb on + strand, within Synpcc7942_0602 at 591.010 kb on - strand, within Synpcc7942_0602 at 591.012 kb on - strand, within Synpcc7942_0602 at 591.170 kb on + strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.303 kb on - strand, within Synpcc7942_0602 at 591.308 kb on - strand, within Synpcc7942_0602 at 591.382 kb on + strand, within Synpcc7942_0602 at 591.390 kb on - strand, within Synpcc7942_0602 at 591.464 kb on - strand at 591.648 kb on + strand, within glgC at 591.795 kb on - strand, within glgC at 591.872 kb on - strand, within glgC at 592.010 kb on - strand, within glgC at 592.383 kb on - strand, within glgC
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chlorite 0.625 mM remove 589,849 - prkE Synpcc7942_0600 0.86 +2.4 589,856 + prkE Synpcc7942_0600 0.87 +2.0 589,863 + prkE Synpcc7942_0600 0.87 +2.2 589,880 - prkE Synpcc7942_0600 0.88 +2.3 589,915 + -0.0 589,962 + +2.1 589,962 + +1.3 589,977 + +1.8 589,985 - +1.5 589,993 - +1.5 590,001 + +2.1 590,008 - +1.6 590,011 + +1.8 590,021 + +1.9 590,048 + +2.1 590,056 + -0.3 590,058 + +0.0 590,068 + +0.5 590,068 + -0.9 590,071 - +1.2 590,076 - +0.1 590,076 - +1.5 590,081 - -1.4 590,101 + +0.5 590,147 - +1.6 590,153 + +1.8 590,161 - Synpcc7942_0601 0.12 +0.4 590,182 - Synpcc7942_0601 0.20 +2.3 590,228 + Synpcc7942_0601 0.38 +0.4 590,228 + Synpcc7942_0601 0.38 -0.3 590,228 + Synpcc7942_0601 0.38 +1.7 590,236 + Synpcc7942_0601 0.41 +0.6 590,236 - Synpcc7942_0601 0.41 +0.9 590,236 - Synpcc7942_0601 0.41 +0.4 590,236 - Synpcc7942_0601 0.41 +1.9 590,254 + Synpcc7942_0601 0.48 -0.0 590,254 + Synpcc7942_0601 0.48 -1.7 590,299 - Synpcc7942_0601 0.65 -0.2 590,371 + -1.7 590,402 - +0.4 590,402 - +0.2 590,446 + -0.0 590,562 + -0.9 590,569 - -2.4 590,569 - -2.4 590,569 - +0.0 590,598 + -1.2 590,828 + -2.2 590,865 + -1.1 590,902 + -0.3 590,974 + Synpcc7942_0602 0.21 -0.0 591,002 + Synpcc7942_0602 0.26 -0.8 591,002 - Synpcc7942_0602 0.26 -0.5 591,004 + Synpcc7942_0602 0.26 -1.0 591,010 - Synpcc7942_0602 0.27 -2.5 591,012 - Synpcc7942_0602 0.27 -1.7 591,170 + Synpcc7942_0602 0.53 -0.6 591,281 - Synpcc7942_0602 0.71 -2.7 591,281 - Synpcc7942_0602 0.71 -1.8 591,299 - Synpcc7942_0602 0.74 -2.0 591,299 - Synpcc7942_0602 0.74 -2.9 591,303 - Synpcc7942_0602 0.75 -0.9 591,308 - Synpcc7942_0602 0.76 +0.5 591,382 + Synpcc7942_0602 0.88 +1.0 591,390 - Synpcc7942_0602 0.89 +0.2 591,464 - +0.1 591,648 + glgC Synpcc7942_0603 0.15 -0.9 591,795 - glgC Synpcc7942_0603 0.26 -0.8 591,872 - glgC Synpcc7942_0603 0.32 -0.3 592,010 - glgC Synpcc7942_0603 0.43 -0.0 592,383 - glgC Synpcc7942_0603 0.71 -0.8
Or see this region's nucleotide sequence