Experiment: BG11 with Chlorite 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prkE and Synpcc7942_0601 are separated by 69 nucleotides Synpcc7942_0601 and Synpcc7942_0602 are separated by 455 nucleotides
Synpcc7942_0600: prkE - serine/threonine protein kinase, at 588,528 to 590,060
prkE
Synpcc7942_0601: Synpcc7942_0601 - hypothetical protein, at 590,130 to 590,390
_0601
Synpcc7942_0602: Synpcc7942_0602 - hypothetical protein, at 590,846 to 591,454
_0602
Position (kb) 590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 589.140 kb on + strand, within prkE at 589.140 kb on + strand, within prkE at 589.140 kb on + strand, within prkE at 589.147 kb on + strand, within prkE at 589.148 kb on - strand, within prkE at 589.148 kb on - strand, within prkE at 589.173 kb on + strand, within prkE at 589.204 kb on - strand, within prkE at 589.204 kb on - strand, within prkE at 589.206 kb on + strand, within prkE at 589.207 kb on + strand, within prkE at 589.214 kb on - strand, within prkE at 589.214 kb on - strand, within prkE at 589.234 kb on + strand, within prkE at 589.242 kb on - strand, within prkE at 589.289 kb on - strand, within prkE at 589.300 kb on + strand, within prkE at 589.301 kb on + strand, within prkE at 589.301 kb on + strand at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.322 kb on + strand, within prkE at 589.347 kb on - strand, within prkE at 589.365 kb on + strand, within prkE at 589.371 kb on - strand, within prkE at 589.373 kb on - strand, within prkE at 589.382 kb on - strand, within prkE at 589.412 kb on + strand, within prkE at 589.430 kb on + strand, within prkE at 589.430 kb on + strand, within prkE at 589.430 kb on + strand, within prkE at 589.430 kb on + strand, within prkE at 589.438 kb on - strand, within prkE at 589.438 kb on - strand, within prkE at 589.438 kb on - strand, within prkE at 589.440 kb on + strand, within prkE at 589.440 kb on + strand, within prkE at 589.445 kb on - strand, within prkE at 589.446 kb on - strand, within prkE at 589.455 kb on + strand, within prkE at 589.476 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.484 kb on + strand, within prkE at 589.489 kb on - strand, within prkE at 589.489 kb on - strand, within prkE at 589.489 kb on - strand, within prkE at 589.489 kb on - strand, within prkE at 589.489 kb on - strand, within prkE at 589.494 kb on - strand, within prkE at 589.500 kb on - strand, within prkE at 589.532 kb on + strand, within prkE at 589.538 kb on + strand, within prkE at 589.546 kb on - strand, within prkE at 589.548 kb on + strand, within prkE at 589.548 kb on + strand, within prkE at 589.588 kb on + strand, within prkE at 589.619 kb on - strand, within prkE at 589.641 kb on - strand, within prkE at 589.673 kb on - strand, within prkE at 589.676 kb on + strand, within prkE at 589.676 kb on + strand, within prkE at 589.676 kb on + strand, within prkE at 589.678 kb on + strand, within prkE at 589.684 kb on - strand, within prkE at 589.742 kb on + strand, within prkE at 589.758 kb on - strand, within prkE at 589.789 kb on - strand, within prkE at 589.793 kb on + strand, within prkE at 589.809 kb on + strand, within prkE at 589.810 kb on - strand, within prkE at 589.815 kb on - strand, within prkE at 589.815 kb on - strand, within prkE at 589.816 kb on + strand, within prkE at 589.842 kb on + strand, within prkE at 589.845 kb on - strand, within prkE at 589.849 kb on - strand, within prkE at 589.856 kb on + strand, within prkE at 589.863 kb on + strand, within prkE at 589.880 kb on - strand, within prkE at 589.915 kb on + strand at 589.962 kb on + strand at 589.962 kb on + strand at 589.977 kb on + strand at 589.985 kb on - strand at 589.993 kb on - strand at 590.001 kb on + strand at 590.008 kb on - strand at 590.011 kb on + strand at 590.021 kb on + strand at 590.048 kb on + strand at 590.056 kb on + strand at 590.058 kb on + strand at 590.068 kb on + strand at 590.068 kb on + strand at 590.071 kb on - strand at 590.076 kb on - strand at 590.076 kb on - strand at 590.081 kb on - strand at 590.101 kb on + strand at 590.147 kb on - strand at 590.153 kb on + strand at 590.161 kb on - strand, within Synpcc7942_0601 at 590.182 kb on - strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.236 kb on + strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.254 kb on + strand, within Synpcc7942_0601 at 590.254 kb on + strand, within Synpcc7942_0601 at 590.299 kb on - strand, within Synpcc7942_0601 at 590.371 kb on + strand at 590.402 kb on - strand at 590.402 kb on - strand at 590.446 kb on + strand at 590.562 kb on + strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.598 kb on + strand at 590.828 kb on + strand at 590.865 kb on + strand at 590.902 kb on + strand at 590.974 kb on + strand, within Synpcc7942_0602 at 591.002 kb on + strand, within Synpcc7942_0602 at 591.002 kb on - strand, within Synpcc7942_0602 at 591.004 kb on + strand, within Synpcc7942_0602 at 591.010 kb on - strand, within Synpcc7942_0602 at 591.012 kb on - strand, within Synpcc7942_0602 at 591.170 kb on + strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.303 kb on - strand, within Synpcc7942_0602 at 591.308 kb on - strand, within Synpcc7942_0602 at 591.382 kb on + strand, within Synpcc7942_0602 at 591.390 kb on - strand, within Synpcc7942_0602
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chlorite 0.625 mM remove 589,140 + prkE Synpcc7942_0600 0.40 +1.7 589,140 + prkE Synpcc7942_0600 0.40 +1.7 589,140 + prkE Synpcc7942_0600 0.40 +2.9 589,147 + prkE Synpcc7942_0600 0.40 +2.5 589,148 - prkE Synpcc7942_0600 0.40 +1.2 589,148 - prkE Synpcc7942_0600 0.40 +2.3 589,173 + prkE Synpcc7942_0600 0.42 +1.3 589,204 - prkE Synpcc7942_0600 0.44 +2.1 589,204 - prkE Synpcc7942_0600 0.44 +2.0 589,206 + prkE Synpcc7942_0600 0.44 +0.8 589,207 + prkE Synpcc7942_0600 0.44 +1.2 589,214 - prkE Synpcc7942_0600 0.45 +1.2 589,214 - prkE Synpcc7942_0600 0.45 +1.5 589,234 + prkE Synpcc7942_0600 0.46 +2.2 589,242 - prkE Synpcc7942_0600 0.47 +3.5 589,289 - prkE Synpcc7942_0600 0.50 +0.9 589,300 + prkE Synpcc7942_0600 0.50 +1.2 589,301 + prkE Synpcc7942_0600 0.50 +2.2 589,301 + +3.0 589,309 - prkE Synpcc7942_0600 0.51 +1.5 589,309 - prkE Synpcc7942_0600 0.51 +1.6 589,309 - prkE Synpcc7942_0600 0.51 +1.8 589,309 - prkE Synpcc7942_0600 0.51 +3.5 589,322 + prkE Synpcc7942_0600 0.52 +0.7 589,347 - prkE Synpcc7942_0600 0.53 +1.4 589,365 + prkE Synpcc7942_0600 0.55 +2.3 589,371 - prkE Synpcc7942_0600 0.55 +2.9 589,373 - prkE Synpcc7942_0600 0.55 +2.5 589,382 - prkE Synpcc7942_0600 0.56 +2.7 589,412 + prkE Synpcc7942_0600 0.58 +1.7 589,430 + prkE Synpcc7942_0600 0.59 +1.6 589,430 + prkE Synpcc7942_0600 0.59 +1.9 589,430 + prkE Synpcc7942_0600 0.59 +1.6 589,430 + prkE Synpcc7942_0600 0.59 +1.1 589,438 - prkE Synpcc7942_0600 0.59 +1.7 589,438 - prkE Synpcc7942_0600 0.59 +1.5 589,438 - prkE Synpcc7942_0600 0.59 +2.5 589,440 + prkE Synpcc7942_0600 0.59 +3.2 589,440 + prkE Synpcc7942_0600 0.59 +1.7 589,445 - prkE Synpcc7942_0600 0.60 +1.3 589,446 - prkE Synpcc7942_0600 0.60 +0.1 589,455 + prkE Synpcc7942_0600 0.60 +2.2 589,476 + prkE Synpcc7942_0600 0.62 +1.4 589,481 + prkE Synpcc7942_0600 0.62 +2.4 589,481 + prkE Synpcc7942_0600 0.62 +1.7 589,481 + prkE Synpcc7942_0600 0.62 +1.7 589,481 + prkE Synpcc7942_0600 0.62 +1.2 589,481 + prkE Synpcc7942_0600 0.62 +1.8 589,481 + prkE Synpcc7942_0600 0.62 +1.7 589,481 + prkE Synpcc7942_0600 0.62 +1.4 589,481 + prkE Synpcc7942_0600 0.62 +1.5 589,481 + prkE Synpcc7942_0600 0.62 +1.6 589,481 + prkE Synpcc7942_0600 0.62 +2.7 589,481 + prkE Synpcc7942_0600 0.62 +2.2 589,484 + prkE Synpcc7942_0600 0.62 +2.3 589,489 - prkE Synpcc7942_0600 0.63 +2.1 589,489 - prkE Synpcc7942_0600 0.63 +1.5 589,489 - prkE Synpcc7942_0600 0.63 +1.2 589,489 - prkE Synpcc7942_0600 0.63 +2.2 589,489 - prkE Synpcc7942_0600 0.63 +0.3 589,494 - prkE Synpcc7942_0600 0.63 +2.4 589,500 - prkE Synpcc7942_0600 0.63 +2.2 589,532 + prkE Synpcc7942_0600 0.65 +1.8 589,538 + prkE Synpcc7942_0600 0.66 +1.3 589,546 - prkE Synpcc7942_0600 0.66 +2.2 589,548 + prkE Synpcc7942_0600 0.67 +0.5 589,548 + prkE Synpcc7942_0600 0.67 +1.8 589,588 + prkE Synpcc7942_0600 0.69 +2.1 589,619 - prkE Synpcc7942_0600 0.71 +1.2 589,641 - prkE Synpcc7942_0600 0.73 +2.2 589,673 - prkE Synpcc7942_0600 0.75 +1.3 589,676 + prkE Synpcc7942_0600 0.75 +1.8 589,676 + prkE Synpcc7942_0600 0.75 +1.7 589,676 + prkE Synpcc7942_0600 0.75 +3.4 589,678 + prkE Synpcc7942_0600 0.75 +2.4 589,684 - prkE Synpcc7942_0600 0.75 +2.2 589,742 + prkE Synpcc7942_0600 0.79 +1.4 589,758 - prkE Synpcc7942_0600 0.80 +3.0 589,789 - prkE Synpcc7942_0600 0.82 +2.1 589,793 + prkE Synpcc7942_0600 0.83 +1.0 589,809 + prkE Synpcc7942_0600 0.84 -0.3 589,810 - prkE Synpcc7942_0600 0.84 +2.5 589,815 - prkE Synpcc7942_0600 0.84 +1.3 589,815 - prkE Synpcc7942_0600 0.84 +2.2 589,816 + prkE Synpcc7942_0600 0.84 +3.2 589,842 + prkE Synpcc7942_0600 0.86 +1.7 589,845 - prkE Synpcc7942_0600 0.86 +2.2 589,849 - prkE Synpcc7942_0600 0.86 +2.4 589,856 + prkE Synpcc7942_0600 0.87 +2.0 589,863 + prkE Synpcc7942_0600 0.87 +2.2 589,880 - prkE Synpcc7942_0600 0.88 +2.3 589,915 + -0.0 589,962 + +2.1 589,962 + +1.3 589,977 + +1.8 589,985 - +1.5 589,993 - +1.5 590,001 + +2.1 590,008 - +1.6 590,011 + +1.8 590,021 + +1.9 590,048 + +2.1 590,056 + -0.3 590,058 + +0.0 590,068 + +0.5 590,068 + -0.9 590,071 - +1.2 590,076 - +0.1 590,076 - +1.5 590,081 - -1.4 590,101 + +0.5 590,147 - +1.6 590,153 + +1.8 590,161 - Synpcc7942_0601 0.12 +0.4 590,182 - Synpcc7942_0601 0.20 +2.3 590,228 + Synpcc7942_0601 0.38 +0.4 590,228 + Synpcc7942_0601 0.38 -0.3 590,228 + Synpcc7942_0601 0.38 +1.7 590,236 + Synpcc7942_0601 0.41 +0.6 590,236 - Synpcc7942_0601 0.41 +0.9 590,236 - Synpcc7942_0601 0.41 +0.4 590,236 - Synpcc7942_0601 0.41 +1.9 590,254 + Synpcc7942_0601 0.48 -0.0 590,254 + Synpcc7942_0601 0.48 -1.7 590,299 - Synpcc7942_0601 0.65 -0.2 590,371 + -1.7 590,402 - +0.4 590,402 - +0.2 590,446 + -0.0 590,562 + -0.9 590,569 - -2.4 590,569 - -2.4 590,569 - +0.0 590,598 + -1.2 590,828 + -2.2 590,865 + -1.1 590,902 + -0.3 590,974 + Synpcc7942_0602 0.21 -0.0 591,002 + Synpcc7942_0602 0.26 -0.8 591,002 - Synpcc7942_0602 0.26 -0.5 591,004 + Synpcc7942_0602 0.26 -1.0 591,010 - Synpcc7942_0602 0.27 -2.5 591,012 - Synpcc7942_0602 0.27 -1.7 591,170 + Synpcc7942_0602 0.53 -0.6 591,281 - Synpcc7942_0602 0.71 -2.7 591,281 - Synpcc7942_0602 0.71 -1.8 591,299 - Synpcc7942_0602 0.74 -2.0 591,299 - Synpcc7942_0602 0.74 -2.9 591,303 - Synpcc7942_0602 0.75 -0.9 591,308 - Synpcc7942_0602 0.76 +0.5 591,382 + Synpcc7942_0602 0.88 +1.0 591,390 - Synpcc7942_0602 0.89 +0.2
Or see this region's nucleotide sequence