Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04420

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04410 and PGA1_c04420 are separated by 37 nucleotidesPGA1_c04420 and PGA1_c04430 overlap by 4 nucleotides PGA1_c04410: PGA1_c04410 - Predicted acyl-CoA transferases/carnitine dehydratase, at 427,996 to 429,372 _c04410 PGA1_c04420: PGA1_c04420 - putative glutathione transport system permease protein GsiD, at 429,410 to 430,564 _c04420 PGA1_c04430: PGA1_c04430 - putative peptide permease protein, at 430,561 to 431,589 _c04430 Position (kb) 429 430 431Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 428.427 kb on + strand, within PGA1_c04410at 428.430 kb on - strand, within PGA1_c04410at 428.445 kb on - strand, within PGA1_c04410at 428.472 kb on + strand, within PGA1_c04410at 428.516 kb on - strand, within PGA1_c04410at 428.523 kb on + strand, within PGA1_c04410at 428.570 kb on - strand, within PGA1_c04410at 428.611 kb on - strand, within PGA1_c04410at 428.611 kb on - strand, within PGA1_c04410at 428.613 kb on + strand, within PGA1_c04410at 428.613 kb on + strand, within PGA1_c04410at 428.620 kb on + strand, within PGA1_c04410at 428.620 kb on + strand, within PGA1_c04410at 428.622 kb on + strand, within PGA1_c04410at 428.628 kb on - strand, within PGA1_c04410at 428.628 kb on - strand, within PGA1_c04410at 428.630 kb on - strand, within PGA1_c04410at 428.637 kb on + strand, within PGA1_c04410at 428.637 kb on + strand, within PGA1_c04410at 428.637 kb on + strand, within PGA1_c04410at 428.638 kb on - strand, within PGA1_c04410at 428.645 kb on - strand, within PGA1_c04410at 428.682 kb on + strand, within PGA1_c04410at 428.750 kb on - strand, within PGA1_c04410at 428.776 kb on + strand, within PGA1_c04410at 428.798 kb on - strand, within PGA1_c04410at 428.855 kb on + strand, within PGA1_c04410at 428.891 kb on + strand, within PGA1_c04410at 428.891 kb on + strand, within PGA1_c04410at 428.899 kb on - strand, within PGA1_c04410at 428.899 kb on - strand, within PGA1_c04410at 428.929 kb on + strand, within PGA1_c04410at 428.932 kb on + strand, within PGA1_c04410at 429.000 kb on - strand, within PGA1_c04410at 429.021 kb on + strand, within PGA1_c04410at 429.026 kb on + strand, within PGA1_c04410at 429.094 kb on + strand, within PGA1_c04410at 429.112 kb on - strand, within PGA1_c04410at 429.128 kb on + strand, within PGA1_c04410at 429.151 kb on + strand, within PGA1_c04410at 429.159 kb on - strand, within PGA1_c04410at 429.159 kb on - strand, within PGA1_c04410at 429.193 kb on + strand, within PGA1_c04410at 429.193 kb on + strand, within PGA1_c04410at 429.193 kb on + strand, within PGA1_c04410at 429.198 kb on + strand, within PGA1_c04410at 429.198 kb on + strand, within PGA1_c04410at 429.198 kb on + strand, within PGA1_c04410at 429.201 kb on - strand, within PGA1_c04410at 429.206 kb on - strand, within PGA1_c04410at 429.206 kb on - strand, within PGA1_c04410at 429.206 kb on - strand, within PGA1_c04410at 429.239 kb on - strandat 429.247 kb on - strandat 429.260 kb on - strandat 429.271 kb on - strandat 429.295 kb on + strandat 429.354 kb on - strandat 429.424 kb on + strandat 429.424 kb on + strandat 429.450 kb on - strandat 429.499 kb on - strandat 429.523 kb on - strandat 429.556 kb on + strand, within PGA1_c04420at 429.564 kb on - strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.609 kb on + strand, within PGA1_c04420at 429.727 kb on - strand, within PGA1_c04420at 429.734 kb on + strand, within PGA1_c04420at 429.742 kb on - strand, within PGA1_c04420at 429.781 kb on + strand, within PGA1_c04420at 429.781 kb on + strand, within PGA1_c04420at 429.786 kb on + strand, within PGA1_c04420at 429.789 kb on - strand, within PGA1_c04420at 429.851 kb on + strand, within PGA1_c04420at 429.897 kb on + strand, within PGA1_c04420at 429.932 kb on - strand, within PGA1_c04420at 430.015 kb on + strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.021 kb on + strand, within PGA1_c04420at 430.055 kb on + strand, within PGA1_c04420at 430.070 kb on + strand, within PGA1_c04420at 430.091 kb on + strand, within PGA1_c04420at 430.099 kb on + strand, within PGA1_c04420at 430.121 kb on + strand, within PGA1_c04420at 430.126 kb on + strand, within PGA1_c04420at 430.134 kb on - strand, within PGA1_c04420at 430.246 kb on + strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.265 kb on + strand, within PGA1_c04420at 430.273 kb on - strand, within PGA1_c04420at 430.288 kb on - strand, within PGA1_c04420at 430.310 kb on + strand, within PGA1_c04420at 430.315 kb on - strand, within PGA1_c04420at 430.387 kb on + strand, within PGA1_c04420at 430.411 kb on + strand, within PGA1_c04420at 430.411 kb on + strand, within PGA1_c04420at 430.411 kb on + strand, within PGA1_c04420at 430.418 kb on + strand, within PGA1_c04420at 430.419 kb on + strand, within PGA1_c04420at 430.429 kb on + strand, within PGA1_c04420at 430.429 kb on + strand, within PGA1_c04420at 430.454 kb on + strandat 430.475 kb on + strandat 430.483 kb on - strandat 430.490 kb on - strandat 430.512 kb on - strandat 430.575 kb on + strandat 430.575 kb on + strandat 430.575 kb on + strandat 430.575 kb on + strandat 430.583 kb on - strandat 430.583 kb on - strandat 430.583 kb on - strandat 430.583 kb on - strandat 430.628 kb on + strandat 430.636 kb on - strandat 430.701 kb on - strand, within PGA1_c04430at 430.713 kb on - strand, within PGA1_c04430at 430.718 kb on - strand, within PGA1_c04430at 430.737 kb on + strand, within PGA1_c04430at 430.747 kb on + strand, within PGA1_c04430at 430.747 kb on + strand, within PGA1_c04430at 430.747 kb on + strand, within PGA1_c04430at 430.750 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.847 kb on - strand, within PGA1_c04430at 430.941 kb on + strand, within PGA1_c04430at 430.963 kb on + strand, within PGA1_c04430at 430.963 kb on + strand, within PGA1_c04430at 431.016 kb on - strand, within PGA1_c04430at 431.029 kb on + strand, within PGA1_c04430at 431.037 kb on - strand, within PGA1_c04430at 431.088 kb on + strand, within PGA1_c04430at 431.096 kb on - strand, within PGA1_c04430at 431.120 kb on + strand, within PGA1_c04430at 431.121 kb on + strand, within PGA1_c04430at 431.121 kb on + strand, within PGA1_c04430at 431.121 kb on + strand, within PGA1_c04430at 431.128 kb on - strand, within PGA1_c04430at 431.129 kb on - strand, within PGA1_c04430at 431.129 kb on - strand, within PGA1_c04430at 431.139 kb on - strand, within PGA1_c04430at 431.140 kb on + strand, within PGA1_c04430at 431.156 kb on + strand, within PGA1_c04430at 431.164 kb on - strand, within PGA1_c04430at 431.202 kb on + strand, within PGA1_c04430at 431.239 kb on - strand, within PGA1_c04430at 431.244 kb on - strand, within PGA1_c04430at 431.244 kb on - strand, within PGA1_c04430at 431.244 kb on - strand, within PGA1_c04430at 431.282 kb on + strand, within PGA1_c04430at 431.290 kb on - strand, within PGA1_c04430at 431.290 kb on - strand, within PGA1_c04430at 431.314 kb on + strand, within PGA1_c04430at 431.317 kb on - strand, within PGA1_c04430at 431.322 kb on - strand, within PGA1_c04430at 431.337 kb on + strand, within PGA1_c04430at 431.348 kb on + strand, within PGA1_c04430at 431.355 kb on + strand, within PGA1_c04430at 431.356 kb on - strand, within PGA1_c04430at 431.356 kb on - strand, within PGA1_c04430at 431.356 kb on - strand, within PGA1_c04430at 431.358 kb on - strand, within PGA1_c04430at 431.360 kb on + strand, within PGA1_c04430at 431.385 kb on - strand, within PGA1_c04430at 431.440 kb on + strand, within PGA1_c04430at 431.445 kb on + strand, within PGA1_c04430at 431.448 kb on - strand, within PGA1_c04430at 431.448 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.547 kb on + strandat 431.552 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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428,427 + PGA1_c04410 0.31 +0.3
428,430 - PGA1_c04410 0.32 +0.6
428,445 - PGA1_c04410 0.33 -0.7
428,472 + PGA1_c04410 0.35 +0.3
428,516 - PGA1_c04410 0.38 -2.8
428,523 + PGA1_c04410 0.38 +0.8
428,570 - PGA1_c04410 0.42 -0.3
428,611 - PGA1_c04410 0.45 -1.3
428,611 - PGA1_c04410 0.45 +0.5
428,613 + PGA1_c04410 0.45 -1.1
428,613 + PGA1_c04410 0.45 -0.4
428,620 + PGA1_c04410 0.45 -1.2
428,620 + PGA1_c04410 0.45 -0.3
428,622 + PGA1_c04410 0.45 -0.8
428,628 - PGA1_c04410 0.46 -0.8
428,628 - PGA1_c04410 0.46 +0.6
428,630 - PGA1_c04410 0.46 -0.3
428,637 + PGA1_c04410 0.47 +0.3
428,637 + PGA1_c04410 0.47 -2.7
428,637 + PGA1_c04410 0.47 +0.6
428,638 - PGA1_c04410 0.47 -0.3
428,645 - PGA1_c04410 0.47 -0.7
428,682 + PGA1_c04410 0.50 +0.4
428,750 - PGA1_c04410 0.55 +0.5
428,776 + PGA1_c04410 0.57 -1.4
428,798 - PGA1_c04410 0.58 +0.6
428,855 + PGA1_c04410 0.62 -0.3
428,891 + PGA1_c04410 0.65 +0.2
428,891 + PGA1_c04410 0.65 -0.9
428,899 - PGA1_c04410 0.66 -1.4
428,899 - PGA1_c04410 0.66 -2.5
428,929 + PGA1_c04410 0.68 -1.4
428,932 + PGA1_c04410 0.68 -0.3
429,000 - PGA1_c04410 0.73 +0.1
429,021 + PGA1_c04410 0.74 +0.3
429,026 + PGA1_c04410 0.75 +1.0
429,094 + PGA1_c04410 0.80 +0.2
429,112 - PGA1_c04410 0.81 +0.8
429,128 + PGA1_c04410 0.82 -1.1
429,151 + PGA1_c04410 0.84 -0.4
429,159 - PGA1_c04410 0.84 -1.6
429,159 - PGA1_c04410 0.84 -1.7
429,193 + PGA1_c04410 0.87 -3.1
429,193 + PGA1_c04410 0.87 -0.8
429,193 + PGA1_c04410 0.87 -0.2
429,198 + PGA1_c04410 0.87 -1.7
429,198 + PGA1_c04410 0.87 -1.3
429,198 + PGA1_c04410 0.87 -0.7
429,201 - PGA1_c04410 0.88 -2.1
429,206 - PGA1_c04410 0.88 -0.4
429,206 - PGA1_c04410 0.88 +0.7
429,206 - PGA1_c04410 0.88 -1.0
429,239 - +1.2
429,247 - +0.1
429,260 - -1.3
429,271 - -0.4
429,295 + -0.8
429,354 - +1.0
429,424 + -1.7
429,424 + -2.7
429,450 - -1.7
429,499 - -2.6
429,523 - -1.8
429,556 + PGA1_c04420 0.13 -1.8
429,564 - PGA1_c04420 0.13 -2.6
429,583 + PGA1_c04420 0.15 -1.6
429,583 + PGA1_c04420 0.15 -2.3
429,583 + PGA1_c04420 0.15 -2.3
429,583 + PGA1_c04420 0.15 -0.6
429,583 + PGA1_c04420 0.15 -1.8
429,583 + PGA1_c04420 0.15 -3.3
429,583 + PGA1_c04420 0.15 -1.1
429,583 + PGA1_c04420 0.15 -0.6
429,583 + PGA1_c04420 0.15 -3.5
429,583 + PGA1_c04420 0.15 -3.3
429,591 - PGA1_c04420 0.16 -3.6
429,591 - PGA1_c04420 0.16 -2.6
429,591 - PGA1_c04420 0.16 -1.7
429,591 - PGA1_c04420 0.16 -1.6
429,591 - PGA1_c04420 0.16 -1.7
429,591 - PGA1_c04420 0.16 -2.9
429,591 - PGA1_c04420 0.16 -0.3
429,591 - PGA1_c04420 0.16 -3.4
429,591 - PGA1_c04420 0.16 -2.0
429,591 - PGA1_c04420 0.16 -2.5
429,591 - PGA1_c04420 0.16 -4.3
429,609 + PGA1_c04420 0.17 -1.3
429,727 - PGA1_c04420 0.27 -2.6
429,734 + PGA1_c04420 0.28 -3.3
429,742 - PGA1_c04420 0.29 -0.3
429,781 + PGA1_c04420 0.32 -0.8
429,781 + PGA1_c04420 0.32 -1.3
429,786 + PGA1_c04420 0.33 -3.1
429,789 - PGA1_c04420 0.33 -3.3
429,851 + PGA1_c04420 0.38 -2.1
429,897 + PGA1_c04420 0.42 -2.8
429,932 - PGA1_c04420 0.45 -4.3
430,015 + PGA1_c04420 0.52 -3.3
430,018 - PGA1_c04420 0.53 -1.1
430,018 - PGA1_c04420 0.53 -2.8
430,018 - PGA1_c04420 0.53 -2.8
430,021 + PGA1_c04420 0.53 -2.7
430,055 + PGA1_c04420 0.56 -1.6
430,070 + PGA1_c04420 0.57 -0.9
430,091 + PGA1_c04420 0.59 -1.6
430,099 + PGA1_c04420 0.60 -2.6
430,121 + PGA1_c04420 0.62 -2.1
430,126 + PGA1_c04420 0.62 -3.7
430,134 - PGA1_c04420 0.63 -1.3
430,246 + PGA1_c04420 0.72 -2.1
430,254 - PGA1_c04420 0.73 -1.8
430,254 - PGA1_c04420 0.73 -3.3
430,254 - PGA1_c04420 0.73 -1.4
430,254 - PGA1_c04420 0.73 -1.1
430,265 + PGA1_c04420 0.74 -3.6
430,273 - PGA1_c04420 0.75 -1.3
430,288 - PGA1_c04420 0.76 -1.4
430,310 + PGA1_c04420 0.78 -1.2
430,315 - PGA1_c04420 0.78 -2.5
430,387 + PGA1_c04420 0.85 -0.6
430,411 + PGA1_c04420 0.87 -1.5
430,411 + PGA1_c04420 0.87 -2.7
430,411 + PGA1_c04420 0.87 -1.3
430,418 + PGA1_c04420 0.87 -2.0
430,419 + PGA1_c04420 0.87 -0.8
430,429 + PGA1_c04420 0.88 -3.1
430,429 + PGA1_c04420 0.88 -1.7
430,454 + -3.3
430,475 + -1.6
430,483 - -2.8
430,490 - -3.6
430,512 - -2.4
430,575 + -2.0
430,575 + -1.6
430,575 + -2.6
430,575 + -1.3
430,583 - -1.5
430,583 - -0.4
430,583 - -3.2
430,583 - -3.1
430,628 + -2.1
430,636 - -2.8
430,701 - PGA1_c04430 0.14 -3.0
430,713 - PGA1_c04430 0.15 -1.7
430,718 - PGA1_c04430 0.15 -2.8
430,737 + PGA1_c04430 0.17 -3.0
430,747 + PGA1_c04430 0.18 -1.8
430,747 + PGA1_c04430 0.18 -3.5
430,747 + PGA1_c04430 0.18 -1.6
430,750 - PGA1_c04430 0.18 -3.2
430,755 - PGA1_c04430 0.19 -3.7
430,755 - PGA1_c04430 0.19 -1.1
430,755 - PGA1_c04430 0.19 -2.5
430,755 - PGA1_c04430 0.19 -1.6
430,755 - PGA1_c04430 0.19 -3.2
430,847 - PGA1_c04430 0.28 -0.8
430,941 + PGA1_c04430 0.37 -1.5
430,963 + PGA1_c04430 0.39 -1.4
430,963 + PGA1_c04430 0.39 -3.7
431,016 - PGA1_c04430 0.44 -2.1
431,029 + PGA1_c04430 0.45 -3.9
431,037 - PGA1_c04430 0.46 -3.5
431,088 + PGA1_c04430 0.51 -1.1
431,096 - PGA1_c04430 0.52 -1.4
431,120 + PGA1_c04430 0.54 -2.9
431,121 + PGA1_c04430 0.54 -3.4
431,121 + PGA1_c04430 0.54 -2.9
431,121 + PGA1_c04430 0.54 -0.8
431,128 - PGA1_c04430 0.55 -2.0
431,129 - PGA1_c04430 0.55 -3.5
431,129 - PGA1_c04430 0.55 -1.3
431,139 - PGA1_c04430 0.56 -0.3
431,140 + PGA1_c04430 0.56 -3.2
431,156 + PGA1_c04430 0.58 -2.7
431,164 - PGA1_c04430 0.59 -3.0
431,202 + PGA1_c04430 0.62 -2.9
431,239 - PGA1_c04430 0.66 -3.2
431,244 - PGA1_c04430 0.66 -2.8
431,244 - PGA1_c04430 0.66 -2.3
431,244 - PGA1_c04430 0.66 -2.1
431,282 + PGA1_c04430 0.70 -2.8
431,290 - PGA1_c04430 0.71 -1.4
431,290 - PGA1_c04430 0.71 -1.9
431,314 + PGA1_c04430 0.73 -1.7
431,317 - PGA1_c04430 0.73 -2.7
431,322 - PGA1_c04430 0.74 -2.6
431,337 + PGA1_c04430 0.75 -2.2
431,348 + PGA1_c04430 0.76 -3.3
431,355 + PGA1_c04430 0.77 -2.6
431,356 - PGA1_c04430 0.77 -2.8
431,356 - PGA1_c04430 0.77 -1.4
431,356 - PGA1_c04430 0.77 -2.7
431,358 - PGA1_c04430 0.77 -2.3
431,360 + PGA1_c04430 0.78 -3.3
431,385 - PGA1_c04430 0.80 -3.8
431,440 + PGA1_c04430 0.85 -1.1
431,445 + PGA1_c04430 0.86 -1.8
431,448 - PGA1_c04430 0.86 -1.4
431,448 - PGA1_c04430 0.86 -2.7
431,453 - PGA1_c04430 0.87 -2.3
431,453 - PGA1_c04430 0.87 -0.8
431,453 - PGA1_c04430 0.87 -3.3
431,453 - PGA1_c04430 0.87 -3.3
431,453 - PGA1_c04430 0.87 -3.1
431,453 - PGA1_c04430 0.87 -1.8
431,453 - PGA1_c04430 0.87 -2.3
431,547 + -3.5
431,552 + -2.8

Or see this region's nucleotide sequence