Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03933

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03931 and CCNA_03932 are separated by 2 nucleotidesCCNA_03932 and CCNA_03933 are separated by 30 nucleotidesCCNA_03933 and CCNA_00719 are separated by 115 nucleotides CCNA_03931: CCNA_03931 - hypothetical protein, at 773,437 to 773,730 _03931 CCNA_03932: CCNA_03932 - hypothetical protein, at 773,733 to 773,987 _03932 CCNA_03933: CCNA_03933 - hypothetical protein, at 774,018 to 774,278 _03933 CCNA_00719: CCNA_00719 - type I secretion adaptor protein hlyD, at 774,394 to 775,635 _00719 Position (kb) 774 775Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 773.030 kb on - strandat 773.076 kb on - strandat 773.080 kb on + strandat 773.094 kb on + strandat 773.095 kb on - strandat 773.101 kb on - strandat 773.102 kb on - strandat 773.102 kb on - strandat 773.102 kb on - strandat 773.118 kb on - strandat 773.120 kb on + strandat 773.126 kb on - strandat 773.126 kb on - strandat 773.128 kb on - strandat 773.161 kb on + strandat 773.184 kb on - strandat 773.192 kb on + strandat 773.193 kb on + strandat 773.193 kb on + strandat 773.202 kb on - strandat 773.202 kb on - strandat 773.213 kb on + strandat 773.213 kb on + strandat 773.221 kb on - strandat 773.221 kb on - strandat 773.248 kb on + strandat 773.248 kb on + strandat 773.248 kb on + strandat 773.248 kb on + strandat 773.249 kb on + strandat 773.249 kb on + strandat 773.249 kb on + strandat 773.249 kb on + strandat 773.249 kb on + strandat 773.256 kb on - strandat 773.256 kb on - strandat 773.257 kb on - strandat 773.257 kb on - strandat 773.257 kb on - strandat 773.257 kb on - strandat 773.257 kb on - strandat 773.257 kb on - strandat 773.257 kb on - strandat 773.257 kb on - strandat 773.268 kb on - strandat 773.269 kb on - strandat 773.270 kb on + strandat 773.270 kb on + strandat 773.271 kb on + strandat 773.278 kb on - strandat 773.279 kb on - strandat 773.279 kb on - strandat 773.309 kb on - strandat 773.309 kb on - strandat 773.309 kb on - strandat 773.732 kb on + strandat 773.732 kb on + strandat 773.740 kb on - strandat 773.740 kb on - strandat 773.740 kb on - strandat 773.742 kb on + strandat 773.749 kb on + strandat 773.767 kb on - strand, within CCNA_03932at 773.791 kb on - strand, within CCNA_03932at 773.793 kb on + strand, within CCNA_03932at 773.793 kb on + strand, within CCNA_03932at 773.801 kb on - strand, within CCNA_03932at 773.801 kb on - strand, within CCNA_03932at 773.801 kb on - strand, within CCNA_03932at 773.801 kb on - strand, within CCNA_03932at 773.801 kb on - strand, within CCNA_03932at 773.828 kb on + strand, within CCNA_03932at 773.833 kb on + strand, within CCNA_03932at 773.841 kb on - strand, within CCNA_03932at 773.851 kb on - strand, within CCNA_03932at 773.870 kb on - strand, within CCNA_03932at 773.891 kb on + strand, within CCNA_03932at 773.895 kb on - strand, within CCNA_03932at 773.924 kb on + strand, within CCNA_03932at 773.932 kb on - strand, within CCNA_03932at 773.932 kb on - strand, within CCNA_03932at 773.935 kb on + strand, within CCNA_03932at 773.936 kb on + strand, within CCNA_03932at 773.936 kb on + strand, within CCNA_03932at 773.936 kb on + strand, within CCNA_03932at 773.944 kb on - strand, within CCNA_03932at 773.944 kb on - strand, within CCNA_03932at 773.944 kb on - strand, within CCNA_03932at 773.946 kb on + strand, within CCNA_03932at 773.946 kb on + strand, within CCNA_03932at 773.974 kb on - strandat 774.001 kb on + strandat 774.057 kb on + strand, within CCNA_03933at 774.057 kb on + strand, within CCNA_03933at 774.060 kb on + strand, within CCNA_03933at 774.090 kb on - strand, within CCNA_03933at 774.090 kb on - strand, within CCNA_03933at 774.101 kb on + strand, within CCNA_03933at 774.107 kb on + strand, within CCNA_03933at 774.109 kb on - strand, within CCNA_03933at 774.119 kb on + strand, within CCNA_03933at 774.120 kb on - strand, within CCNA_03933at 774.124 kb on + strand, within CCNA_03933at 774.124 kb on + strand, within CCNA_03933at 774.134 kb on + strand, within CCNA_03933at 774.148 kb on + strand, within CCNA_03933at 774.188 kb on + strand, within CCNA_03933at 774.192 kb on + strand, within CCNA_03933at 774.207 kb on + strand, within CCNA_03933at 774.214 kb on + strand, within CCNA_03933at 774.285 kb on + strandat 774.285 kb on + strandat 774.293 kb on + strandat 774.293 kb on - strandat 774.293 kb on - strandat 774.293 kb on - strandat 774.405 kb on + strandat 774.448 kb on + strandat 774.467 kb on + strandat 774.475 kb on - strandat 774.511 kb on + strandat 774.516 kb on + strandat 774.535 kb on - strand, within CCNA_00719at 774.596 kb on - strand, within CCNA_00719at 774.626 kb on - strand, within CCNA_00719at 774.685 kb on + strand, within CCNA_00719at 774.703 kb on + strand, within CCNA_00719at 774.743 kb on + strand, within CCNA_00719at 774.743 kb on + strand, within CCNA_00719at 774.743 kb on + strand, within CCNA_00719at 774.756 kb on + strand, within CCNA_00719at 774.764 kb on - strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.845 kb on + strand, within CCNA_00719at 774.845 kb on + strand, within CCNA_00719at 774.940 kb on + strand, within CCNA_00719at 774.940 kb on + strand, within CCNA_00719at 774.948 kb on - strand, within CCNA_00719at 774.975 kb on - strand, within CCNA_00719at 774.997 kb on + strand, within CCNA_00719at 775.005 kb on - strand, within CCNA_00719at 775.008 kb on + strand, within CCNA_00719at 775.009 kb on + strand, within CCNA_00719at 775.010 kb on + strand, within CCNA_00719at 775.017 kb on - strand, within CCNA_00719at 775.059 kb on + strand, within CCNA_00719at 775.117 kb on + strand, within CCNA_00719at 775.118 kb on + strand, within CCNA_00719at 775.150 kb on + strand, within CCNA_00719at 775.155 kb on + strand, within CCNA_00719at 775.155 kb on + strand, within CCNA_00719at 775.190 kb on + strand, within CCNA_00719at 775.200 kb on - strand, within CCNA_00719at 775.228 kb on + strand, within CCNA_00719at 775.228 kb on + strand, within CCNA_00719at 775.236 kb on - strand, within CCNA_00719at 775.240 kb on + strand, within CCNA_00719at 775.250 kb on - strand, within CCNA_00719at 775.261 kb on + strand, within CCNA_00719at 775.261 kb on + strand, within CCNA_00719at 775.266 kb on + strand, within CCNA_00719at 775.268 kb on + strand, within CCNA_00719at 775.276 kb on - strand, within CCNA_00719

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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773,030 - +0.1
773,076 - +0.4
773,080 + -0.0
773,094 + +0.1
773,095 - +0.1
773,101 - +0.8
773,102 - +0.2
773,102 - -0.3
773,102 - +0.4
773,118 - -0.8
773,120 + +0.6
773,126 - +1.0
773,126 - -0.3
773,128 - +0.1
773,161 + +0.2
773,184 - +0.5
773,192 + -2.6
773,193 + +1.2
773,193 + +0.3
773,202 - -0.0
773,202 - -1.1
773,213 + +0.3
773,213 + -0.6
773,221 - +0.5
773,221 - +0.8
773,248 + -0.1
773,248 + -0.7
773,248 + +0.2
773,248 + -1.6
773,249 + +0.1
773,249 + +1.1
773,249 + -1.2
773,249 + -1.0
773,249 + -0.2
773,256 - +0.6
773,256 - +0.4
773,257 - +0.5
773,257 - +0.5
773,257 - +0.2
773,257 - +0.4
773,257 - +1.9
773,257 - +0.1
773,257 - +0.2
773,257 - +0.8
773,268 - +0.3
773,269 - +0.6
773,270 + +0.9
773,270 + +0.2
773,271 + +0.3
773,278 - +0.4
773,279 - +0.4
773,279 - +0.2
773,309 - +0.1
773,309 - +0.6
773,309 - +0.2
773,732 + -0.7
773,732 + -0.2
773,740 - +1.3
773,740 - +0.4
773,740 - +0.7
773,742 + -1.3
773,749 + -1.8
773,767 - CCNA_03932 0.13 -2.8
773,791 - CCNA_03932 0.23 -0.0
773,793 + CCNA_03932 0.24 -0.7
773,793 + CCNA_03932 0.24 +0.8
773,801 - CCNA_03932 0.27 +0.9
773,801 - CCNA_03932 0.27 -0.3
773,801 - CCNA_03932 0.27 -4.2
773,801 - CCNA_03932 0.27 -2.1
773,801 - CCNA_03932 0.27 -3.1
773,828 + CCNA_03932 0.37 -1.7
773,833 + CCNA_03932 0.39 -0.9
773,841 - CCNA_03932 0.42 -3.3
773,851 - CCNA_03932 0.46 -3.6
773,870 - CCNA_03932 0.54 -1.9
773,891 + CCNA_03932 0.62 -2.3
773,895 - CCNA_03932 0.64 -0.0
773,924 + CCNA_03932 0.75 -0.4
773,932 - CCNA_03932 0.78 -1.7
773,932 - CCNA_03932 0.78 -1.1
773,935 + CCNA_03932 0.79 -1.8
773,936 + CCNA_03932 0.80 -1.1
773,936 + CCNA_03932 0.80 +0.8
773,936 + CCNA_03932 0.80 -0.7
773,944 - CCNA_03932 0.83 -0.4
773,944 - CCNA_03932 0.83 -2.2
773,944 - CCNA_03932 0.83 -3.3
773,946 + CCNA_03932 0.84 +0.8
773,946 + CCNA_03932 0.84 -0.4
773,974 - -0.7
774,001 + +0.4
774,057 + CCNA_03933 0.15 -0.6
774,057 + CCNA_03933 0.15 -1.2
774,060 + CCNA_03933 0.16 -1.7
774,090 - CCNA_03933 0.28 +0.3
774,090 - CCNA_03933 0.28 +0.7
774,101 + CCNA_03933 0.32 +1.2
774,107 + CCNA_03933 0.34 -2.3
774,109 - CCNA_03933 0.35 +0.3
774,119 + CCNA_03933 0.39 -2.1
774,120 - CCNA_03933 0.39 +0.2
774,124 + CCNA_03933 0.41 -2.1
774,124 + CCNA_03933 0.41 -1.2
774,134 + CCNA_03933 0.44 -0.2
774,148 + CCNA_03933 0.50 -0.6
774,188 + CCNA_03933 0.65 -1.3
774,192 + CCNA_03933 0.67 -1.0
774,207 + CCNA_03933 0.72 -1.0
774,214 + CCNA_03933 0.75 -0.8
774,285 + -1.3
774,285 + -1.4
774,293 + +0.8
774,293 - -0.1
774,293 - +0.7
774,293 - +0.5
774,405 + -0.2
774,448 + -1.7
774,467 + -2.3
774,475 - -1.1
774,511 + -0.0
774,516 + -0.7
774,535 - CCNA_00719 0.11 -1.0
774,596 - CCNA_00719 0.16 -0.0
774,626 - CCNA_00719 0.19 -0.7
774,685 + CCNA_00719 0.23 +2.8
774,703 + CCNA_00719 0.25 -0.0
774,743 + CCNA_00719 0.28 -2.1
774,743 + CCNA_00719 0.28 +0.3
774,743 + CCNA_00719 0.28 -0.2
774,756 + CCNA_00719 0.29 -0.2
774,764 - CCNA_00719 0.30 +1.8
774,838 + CCNA_00719 0.36 -1.9
774,838 + CCNA_00719 0.36 +0.4
774,838 + CCNA_00719 0.36 -2.0
774,838 + CCNA_00719 0.36 +0.2
774,838 + CCNA_00719 0.36 -0.8
774,838 + CCNA_00719 0.36 -0.2
774,838 + CCNA_00719 0.36 -2.8
774,845 + CCNA_00719 0.36 -1.3
774,845 + CCNA_00719 0.36 -1.4
774,940 + CCNA_00719 0.44 -0.7
774,940 + CCNA_00719 0.44 +0.8
774,948 - CCNA_00719 0.45 -0.4
774,975 - CCNA_00719 0.47 -1.4
774,997 + CCNA_00719 0.49 +0.4
775,005 - CCNA_00719 0.49 +0.8
775,008 + CCNA_00719 0.49 -0.9
775,009 + CCNA_00719 0.50 -1.0
775,010 + CCNA_00719 0.50 +0.5
775,017 - CCNA_00719 0.50 -0.0
775,059 + CCNA_00719 0.54 -1.0
775,117 + CCNA_00719 0.58 -0.6
775,118 + CCNA_00719 0.58 -0.0
775,150 + CCNA_00719 0.61 -1.3
775,155 + CCNA_00719 0.61 -0.0
775,155 + CCNA_00719 0.61 -0.4
775,190 + CCNA_00719 0.64 +0.8
775,200 - CCNA_00719 0.65 -1.2
775,228 + CCNA_00719 0.67 +0.2
775,228 + CCNA_00719 0.67 -0.7
775,236 - CCNA_00719 0.68 -0.6
775,240 + CCNA_00719 0.68 +0.6
775,250 - CCNA_00719 0.69 -0.2
775,261 + CCNA_00719 0.70 -2.1
775,261 + CCNA_00719 0.70 -0.7
775,266 + CCNA_00719 0.70 -0.2
775,268 + CCNA_00719 0.70 -0.6
775,276 - CCNA_00719 0.71 +0.4

Or see this region's nucleotide sequence