Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03475

Experiment: PYE with CHIR-090 4 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 4 ug/mL
3,638,848	+		CCNA_03472	0.55	-0.3
3,638,865	-		CCNA_03472	0.61	-0.7
3,638,884	+		CCNA_03472	0.68	+0.2
3,638,922	-		CCNA_03472	0.82	-1.2
3,638,924	-		CCNA_03472	0.83	-0.1
3,638,924	-		CCNA_03472	0.83	+0.2
3,638,933	+		CCNA_03472	0.86	-0.4
3,638,933	+		CCNA_03472	0.86	+0.1
3,638,941	-		CCNA_03472	0.89	-0.5
3,638,941	-		CCNA_03472	0.89	-0.6
3,638,958	+				-0.1
3,638,958	+				+0.2
3,638,958	+				-0.5
3,638,958	+				-2.5
3,638,963	+				-0.3
3,638,963	+				+0.8
3,638,963	+				-1.6
3,638,966	-				-0.3
3,638,966	-				-1.7
3,638,966	-				-0.4
3,638,971	-				+0.7
3,638,971	-				-0.6
3,638,971	-				+0.1
3,639,032	-				-0.2
3,639,042	-				+0.5
3,639,047	-				-0.4
3,639,047	-				+1.1
3,639,068	+				-0.3
3,639,094	+				-0.8
3,639,094	+				+0.7
3,639,099	+				-0.0
3,639,101	-				+0.2
3,639,105	+				-1.6
3,639,107	+				-0.2
3,639,129	-				+0.1
3,639,165	-				-0.3
3,639,171	-				+0.3
3,639,175	-				+0.5
3,639,231	+		CCNA_03473	0.21	-2.2
3,639,239	-		CCNA_03473	0.23	-1.1
3,639,239	-		CCNA_03473	0.23	-0.6
3,639,246	+		CCNA_03473	0.25	-0.2
3,639,268	+		CCNA_03473	0.30	-1.1
3,639,269	-		CCNA_03473	0.31	-0.1
3,639,332	+		CCNA_03473	0.47	-0.3
3,639,348	+		CCNA_03473	0.51	+1.2
3,639,355	-		CCNA_03473	0.52	+0.6
3,639,356	-		CCNA_03473	0.53	+0.2
3,639,356	-		CCNA_03473	0.53	-0.2
3,639,402	+		CCNA_03473	0.64	-0.1
3,639,428	+		CCNA_03473	0.71	-0.3
3,639,433	-		CCNA_03473	0.72	+0.1
3,639,433	-		CCNA_03473	0.72	-0.1
3,639,457	+		CCNA_03473	0.78	-0.3
3,639,493	-		CCNA_03473	0.88	-0.4
3,639,534	+				-0.6
3,639,534	-				+0.3
3,639,539	+				+1.2
3,639,547	-				+0.1
3,639,547	-				-0.1
3,639,726	-		CCNA_03474	0.82	-1.4
3,639,768	-				+0.4
3,639,800	-				-1.2
3,639,898	+				-1.0
3,639,899	+				-0.8
3,639,906	-				-1.9
3,639,906	-				-1.4
3,639,924	+				-1.4
3,639,943	+		CCNA_03475	0.10	-3.3
3,639,951	-		CCNA_03475	0.11	-1.2
3,639,962	-		CCNA_03475	0.12	+0.7
3,640,021	+		CCNA_03475	0.18	-1.6
3,640,048	+		CCNA_03475	0.21	-2.0
3,640,048	+		CCNA_03475	0.21	-2.0
3,640,109	+		CCNA_03475	0.27	+0.4
3,640,126	-		CCNA_03475	0.29	-1.3
3,640,213	-		CCNA_03475	0.38	-0.3
3,640,250	+		CCNA_03475	0.42	+1.9
3,640,311	+		CCNA_03475	0.49	-1.6
3,640,329	+		CCNA_03475	0.51	-1.4
3,640,490	-		CCNA_03475	0.67	-0.3
3,640,598	+		CCNA_03475	0.79	-0.1
3,640,678	+		CCNA_03475	0.87	-1.7
3,640,708	+				-1.8
3,640,725	+				-1.6
3,640,730	+				-2.5
3,640,730	+				-0.6
3,640,781	+				-0.2
3,640,783	+				-0.2
3,640,789	-				-0.6
3,640,789	-				+0.1
3,640,789	-				-1.3
3,640,809	+				+0.0
3,640,814	+				+1.3
3,640,864	+		CCNA_03476	0.15	+1.5
3,640,874	+		CCNA_03476	0.17	-1.8
3,640,874	+				+2.7
3,640,882	-		CCNA_03476	0.19	-0.7
3,640,882	-		CCNA_03476	0.19	-0.2
3,640,923	+		CCNA_03476	0.28	-1.6
3,640,923	+		CCNA_03476	0.28	-0.2
3,640,931	-		CCNA_03476	0.30	-1.0
3,640,946	-		CCNA_03476	0.33	-1.0
3,640,968	+		CCNA_03476	0.38	+0.4
3,640,984	+		CCNA_03476	0.42	-1.3
3,641,026	-		CCNA_03476	0.51	+0.0
3,641,047	+		CCNA_03476	0.56	+0.6
3,641,081	-		CCNA_03476	0.63	-0.3
3,641,111	-		CCNA_03476	0.70	+1.5
3,641,158	-		CCNA_03476	0.80	+0.3
3,641,204	+				-0.5
3,641,207	-				-0.4
3,641,222	-				+0.1
3,641,227	-				+0.4
3,641,227	-				+0.7
3,641,228	-				+1.5
3,641,252	+				+0.0
3,641,258	-				-0.6
3,641,258	-				-0.9
3,641,260	-				-1.7
3,641,356	-		CCNA_03477	0.27	+0.3
3,641,356	-		CCNA_03477	0.27	+0.6
3,641,372	+		CCNA_03477	0.31	-0.9
3,641,378	+		CCNA_03477	0.33	-0.2
3,641,378	-		CCNA_03477	0.33	-0.8
3,641,386	-		CCNA_03477	0.35	+0.5
3,641,386	-		CCNA_03477	0.35	+0.5
3,641,442	-		CCNA_03477	0.48	+0.1
3,641,444	+		CCNA_03477	0.49	+0.2
3,641,447	-		CCNA_03477	0.49	+0.5
3,641,452	-		CCNA_03477	0.50	+0.2
3,641,452	-		CCNA_03477	0.50	-0.7
3,641,455	+		CCNA_03477	0.51	-1.0
3,641,465	-		CCNA_03477	0.54	+0.2
3,641,479	+		CCNA_03477	0.57	-0.1
3,641,490	+		CCNA_03477	0.60	+0.3
3,641,490	+		CCNA_03477	0.60	-0.3
3,641,490	+		CCNA_03477	0.60	+0.3
3,641,495	+		CCNA_03477	0.61	+0.4
3,641,498	-		CCNA_03477	0.62	-0.1
3,641,498	-		CCNA_03477	0.62	-0.2
3,641,498	-		CCNA_03477	0.62	-0.1
3,641,498	-		CCNA_03477	0.62	-0.3
3,641,498	-		CCNA_03477	0.62	-0.9
3,641,498	-		CCNA_03477	0.62	+0.9
3,641,503	-		CCNA_03477	0.63	-0.1
3,641,617	+				-2.0
3,641,651	+				-1.1
3,641,652	-				+0.4
3,641,714	-				-0.0
3,641,773	-				-1.6
3,641,784	-				-2.2