Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01222

Experiment: PYE with CHIR-090 4 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 4 ug/mL
1,347,078	+		CCNA_01220	0.46	+0.5
1,347,108	-		CCNA_01220	0.49	-2.7
1,347,158	+		CCNA_01220	0.53	+0.8
1,347,251	-		CCNA_01220	0.60	-1.1
1,347,291	+		CCNA_01220	0.64	-1.3
1,347,291	+		CCNA_01220	0.64	-1.6
1,347,299	-		CCNA_01220	0.64	-0.2
1,347,314	-		CCNA_01220	0.66	+0.3
1,347,325	-		CCNA_01220	0.67	-1.8
1,347,526	+		CCNA_01220	0.83	-0.7
1,347,554	+		CCNA_01220	0.85	+2.8
1,347,614	-				-1.0
1,347,627	-				+0.2
1,347,648	-				-2.1
1,347,661	-				-0.7
1,347,685	+				-1.5
1,347,685	+				-0.9
1,347,693	-				-2.0
1,347,693	-				-1.6
1,347,705	+				-0.7
1,347,747	-				-1.9
1,347,754	+				-1.2
1,347,762	-		CCNA_01221	0.10	-0.5
1,347,821	+		CCNA_01221	0.33	-0.5
1,347,924	+		CCNA_01221	0.72	-2.6
1,347,924	+		CCNA_01221	0.72	-2.6
1,347,924	+		CCNA_01221	0.72	+0.0
1,347,932	-		CCNA_01221	0.75	-0.1
1,347,941	+		CCNA_01221	0.79	-2.4
1,347,949	-		CCNA_01221	0.82	-0.6
1,347,955	-		CCNA_01221	0.84	-1.4
1,347,963	+		CCNA_01221	0.87	-0.2
1,347,970	-				-0.4
1,347,980	+				-2.2
1,347,998	-				+3.8
1,347,998	-				+0.7
1,348,172	+		CCNA_01222	0.11	-2.8
1,348,193	+		CCNA_01222	0.14	-1.0
1,348,205	+		CCNA_01222	0.15	-0.6
1,348,206	+		CCNA_01222	0.15	-1.0
1,348,206	+		CCNA_01222	0.15	+0.2
1,348,214	-		CCNA_01222	0.16	-0.4
1,348,222	+		CCNA_01222	0.17	+0.0
1,348,230	-		CCNA_01222	0.18	+0.0
1,348,323	-		CCNA_01222	0.27	-1.3
1,348,333	-		CCNA_01222	0.28	+1.6
1,348,333	-		CCNA_01222	0.28	-0.9
1,348,366	-		CCNA_01222	0.32	-1.5
1,348,401	+		CCNA_01222	0.35	-0.7
1,348,459	+		CCNA_01222	0.42	-1.0
1,348,467	-		CCNA_01222	0.42	-0.9
1,348,525	-		CCNA_01222	0.48	-0.6
1,348,525	-		CCNA_01222	0.48	-1.8
1,348,527	+		CCNA_01222	0.49	-1.0
1,348,553	-		CCNA_01222	0.51	-0.6
1,348,553	-		CCNA_01222	0.51	-1.3
1,348,616	+		CCNA_01222	0.58	+0.3
1,348,662	+		CCNA_01222	0.63	+1.2
1,348,677	-		CCNA_01222	0.64	+0.2
1,348,717	-		CCNA_01222	0.69	-2.8
1,348,746	+		CCNA_01222	0.72	-0.5
1,348,755	+		CCNA_01222	0.73	-2.5
1,348,763	+		CCNA_01222	0.73	-0.6
1,348,800	-		CCNA_01222	0.77	-0.2
1,348,820	-		CCNA_01222	0.79	-1.6
1,348,825	-		CCNA_01222	0.80	-1.7
1,348,837	-		CCNA_01222	0.81	+0.5
1,348,867	-		CCNA_01222	0.84	-1.8
1,348,880	-		CCNA_01222	0.86	-0.3
1,349,012	-				-1.1
1,349,045	-				+2.8
1,349,073	+				-0.9
1,349,073	+				-1.3
1,349,080	-				-2.3
1,349,081	-				-0.8
1,349,081	-				-3.3
1,349,081	-				+0.0
1,349,081	-				-2.7
1,349,192	+		CCNA_01223	0.11	-1.6
1,349,205	+		CCNA_01223	0.12	-1.2
1,349,261	+		CCNA_01223	0.15	+1.2
1,349,307	+		CCNA_01223	0.18	-0.8
1,349,333	+		CCNA_01223	0.19	-1.6
1,349,526	+		CCNA_01223	0.30	-2.4
1,349,536	+		CCNA_01223	0.31	-2.9
1,349,538	+		CCNA_01223	0.31	-1.4
1,349,544	-		CCNA_01223	0.31	-1.1
1,349,565	-		CCNA_01223	0.33	-1.3
1,349,599	-		CCNA_01223	0.34	+0.5
1,349,660	+		CCNA_01223	0.38	+2.1
1,349,661	+		CCNA_01223	0.38	+0.0
1,349,667	+		CCNA_01223	0.38	+0.8
1,349,667	+		CCNA_01223	0.38	+1.1
1,349,668	-		CCNA_01223	0.39	-2.1
1,349,675	-		CCNA_01223	0.39	-0.2
1,349,675	-		CCNA_01223	0.39	-1.9
1,349,675	-		CCNA_01223	0.39	-0.7
1,349,675	-		CCNA_01223	0.39	-1.8
1,349,698	+		CCNA_01223	0.40	-0.3
1,349,701	-		CCNA_01223	0.40	-1.2
1,349,701	-		CCNA_01223	0.40	-1.8
1,349,701	-		CCNA_01223	0.40	+2.8
1,349,707	+		CCNA_01223	0.41	-1.9
1,349,710	-		CCNA_01223	0.41	-0.4
1,349,720	-		CCNA_01223	0.42	-0.8
1,349,770	-		CCNA_01223	0.44	-1.7
1,349,770	-		CCNA_01223	0.44	-3.0
1,349,807	+		CCNA_01223	0.47	-0.5
1,349,807	+		CCNA_01223	0.47	-2.3
1,349,812	+		CCNA_01223	0.47	-0.6
1,349,815	-		CCNA_01223	0.47	+0.5
1,349,815	-		CCNA_01223	0.47	-0.5
1,349,815	-		CCNA_01223	0.47	-1.5
1,349,820	-		CCNA_01223	0.47	-1.4
1,349,914	+		CCNA_01223	0.53	-3.2
1,349,916	+		CCNA_01223	0.53	-0.2
1,349,935	+		CCNA_01223	0.54	-2.3