Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00354

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00353 and CCNA_00354 are separated by 70 nucleotidesCCNA_00354 and CCNA_00355 are separated by 170 nucleotides CCNA_00353: CCNA_00353 - O-antigen acetylase, at 369,280 to 370,374 _00353 CCNA_00354: CCNA_00354 - NlpC/P60 CHAP domain amidase protein, at 370,445 to 371,152 _00354 CCNA_00355: CCNA_00355 - hypothetical protein with pentapeptide repeats, at 371,323 to 372,567 _00355 Position (kb) 370 371 372Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 369.471 kb on + strand, within CCNA_00353at 369.481 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.532 kb on + strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.552 kb on + strand, within CCNA_00353at 369.594 kb on + strand, within CCNA_00353at 369.618 kb on + strand, within CCNA_00353at 369.621 kb on - strand, within CCNA_00353at 369.626 kb on - strand, within CCNA_00353at 369.626 kb on - strand, within CCNA_00353at 369.652 kb on + strand, within CCNA_00353at 369.659 kb on + strand, within CCNA_00353at 369.667 kb on - strand, within CCNA_00353at 369.682 kb on + strand, within CCNA_00353at 369.682 kb on + strand, within CCNA_00353at 369.690 kb on - strand, within CCNA_00353at 369.690 kb on - strand, within CCNA_00353at 369.701 kb on + strand, within CCNA_00353at 369.712 kb on + strand, within CCNA_00353at 369.727 kb on + strand, within CCNA_00353at 369.735 kb on - strand, within CCNA_00353at 369.742 kb on + strand, within CCNA_00353at 369.742 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.798 kb on - strand, within CCNA_00353at 369.800 kb on + strand, within CCNA_00353at 369.808 kb on - strand, within CCNA_00353at 369.808 kb on - strand, within CCNA_00353at 369.819 kb on + strand, within CCNA_00353at 369.819 kb on + strand, within CCNA_00353at 369.819 kb on + strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.829 kb on - strand, within CCNA_00353at 369.888 kb on + strand, within CCNA_00353at 369.900 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.915 kb on - strand, within CCNA_00353at 369.915 kb on - strand, within CCNA_00353at 369.915 kb on - strand, within CCNA_00353at 369.937 kb on - strand, within CCNA_00353at 369.941 kb on - strand, within CCNA_00353at 369.982 kb on + strand, within CCNA_00353at 369.982 kb on + strand, within CCNA_00353at 370.017 kb on - strand, within CCNA_00353at 370.022 kb on - strand, within CCNA_00353at 370.027 kb on + strand, within CCNA_00353at 370.027 kb on + strand, within CCNA_00353at 370.045 kb on + strand, within CCNA_00353at 370.053 kb on - strand, within CCNA_00353at 370.071 kb on + strand, within CCNA_00353at 370.079 kb on - strand, within CCNA_00353at 370.080 kb on + strand, within CCNA_00353at 370.080 kb on + strand, within CCNA_00353at 370.404 kb on + strandat 370.411 kb on + strandat 370.412 kb on - strandat 370.419 kb on - strandat 370.431 kb on + strandat 370.437 kb on - strandat 370.444 kb on - strandat 370.466 kb on + strandat 370.495 kb on + strandat 370.505 kb on + strandat 370.600 kb on - strand, within CCNA_00354at 370.610 kb on - strand, within CCNA_00354at 370.640 kb on + strand, within CCNA_00354at 370.640 kb on + strand, within CCNA_00354at 370.665 kb on + strand, within CCNA_00354at 370.666 kb on - strand, within CCNA_00354at 370.674 kb on - strand, within CCNA_00354at 370.684 kb on + strand, within CCNA_00354at 370.684 kb on + strand, within CCNA_00354at 370.725 kb on - strand, within CCNA_00354at 370.739 kb on - strand, within CCNA_00354at 370.805 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.846 kb on + strand, within CCNA_00354at 370.859 kb on - strand, within CCNA_00354at 370.881 kb on + strand, within CCNA_00354at 370.961 kb on + strand, within CCNA_00354at 370.961 kb on + strand, within CCNA_00354at 370.971 kb on + strand, within CCNA_00354at 370.983 kb on - strand, within CCNA_00354at 371.012 kb on + strand, within CCNA_00354at 371.030 kb on + strand, within CCNA_00354at 371.098 kb on + strandat 371.146 kb on + strandat 371.146 kb on + strandat 371.146 kb on + strandat 371.146 kb on + strandat 371.154 kb on - strandat 371.159 kb on - strandat 371.167 kb on + strandat 371.234 kb on + strandat 371.277 kb on + strandat 371.292 kb on - strandat 371.338 kb on - strandat 371.363 kb on - strandat 371.370 kb on + strandat 371.372 kb on - strandat 371.382 kb on - strandat 371.418 kb on + strandat 371.418 kb on + strandat 371.424 kb on + strandat 371.424 kb on + strandat 371.432 kb on - strandat 371.443 kb on + strandat 371.451 kb on - strand, within CCNA_00355at 371.478 kb on + strand, within CCNA_00355at 371.478 kb on + strand, within CCNA_00355at 371.511 kb on - strand, within CCNA_00355at 371.511 kb on - strand, within CCNA_00355at 371.511 kb on - strand, within CCNA_00355at 371.511 kb on - strand, within CCNA_00355at 371.528 kb on + strand, within CCNA_00355at 371.528 kb on - strand, within CCNA_00355at 371.533 kb on + strand, within CCNA_00355at 371.533 kb on + strand, within CCNA_00355at 371.533 kb on + strand, within CCNA_00355at 371.541 kb on - strand, within CCNA_00355at 371.541 kb on - strand, within CCNA_00355at 371.541 kb on - strand, within CCNA_00355at 371.543 kb on + strand, within CCNA_00355at 371.543 kb on + strand, within CCNA_00355at 371.543 kb on + strand, within CCNA_00355at 371.546 kb on - strand, within CCNA_00355at 371.551 kb on - strand, within CCNA_00355at 371.556 kb on - strand, within CCNA_00355at 371.588 kb on + strand, within CCNA_00355at 371.588 kb on + strand, within CCNA_00355at 371.588 kb on + strand, within CCNA_00355at 371.596 kb on - strand, within CCNA_00355at 371.596 kb on - strand, within CCNA_00355at 371.603 kb on + strand, within CCNA_00355at 371.603 kb on + strand, within CCNA_00355at 371.611 kb on - strand, within CCNA_00355at 371.621 kb on - strand, within CCNA_00355at 371.633 kb on + strand, within CCNA_00355at 371.633 kb on + strand, within CCNA_00355at 371.633 kb on + strand, within CCNA_00355at 371.641 kb on - strand, within CCNA_00355at 371.678 kb on + strand, within CCNA_00355at 371.712 kb on + strand, within CCNA_00355at 371.743 kb on - strand, within CCNA_00355at 371.768 kb on + strand, within CCNA_00355at 371.778 kb on + strand, within CCNA_00355at 371.786 kb on + strand, within CCNA_00355at 371.844 kb on - strand, within CCNA_00355at 371.854 kb on - strand, within CCNA_00355at 371.896 kb on + strand, within CCNA_00355at 371.898 kb on + strand, within CCNA_00355at 371.906 kb on - strand, within CCNA_00355at 371.906 kb on - strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.936 kb on + strand, within CCNA_00355at 371.939 kb on - strand, within CCNA_00355at 371.944 kb on - strand, within CCNA_00355at 371.946 kb on + strand, within CCNA_00355at 371.946 kb on + strand, within CCNA_00355at 371.954 kb on - strandat 371.954 kb on - strand, within CCNA_00355at 371.954 kb on - strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.979 kb on - strand, within CCNA_00355at 371.979 kb on - strand, within CCNA_00355at 371.979 kb on - strand, within CCNA_00355at 371.989 kb on - strand, within CCNA_00355at 372.001 kb on + strand, within CCNA_00355at 372.004 kb on - strand, within CCNA_00355at 372.009 kb on - strand, within CCNA_00355at 372.009 kb on - strand, within CCNA_00355at 372.009 kb on - strand, within CCNA_00355at 372.011 kb on + strand, within CCNA_00355at 372.011 kb on + strand, within CCNA_00355at 372.023 kb on + strand, within CCNA_00355at 372.024 kb on - strand, within CCNA_00355at 372.024 kb on - strand, within CCNA_00355at 372.024 kb on - strand, within CCNA_00355at 372.031 kb on - strand, within CCNA_00355at 372.046 kb on - strand, within CCNA_00355

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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369,471 + CCNA_00353 0.17 -0.5
369,481 + CCNA_00353 0.18 -0.6
369,525 + CCNA_00353 0.22 +1.2
369,525 + CCNA_00353 0.22 +0.6
369,525 + CCNA_00353 0.22 -0.4
369,525 + CCNA_00353 0.22 -0.5
369,525 + CCNA_00353 0.22 -0.4
369,525 + CCNA_00353 0.22 -1.5
369,532 + CCNA_00353 0.23 -0.6
369,533 - CCNA_00353 0.23 -2.4
369,533 - CCNA_00353 0.23 -0.9
369,533 - CCNA_00353 0.23 -1.0
369,533 - CCNA_00353 0.23 -1.3
369,533 - CCNA_00353 0.23 -1.3
369,552 + CCNA_00353 0.25 +0.1
369,594 + CCNA_00353 0.29 +0.4
369,618 + CCNA_00353 0.31 -0.2
369,621 - CCNA_00353 0.31 -1.1
369,626 - CCNA_00353 0.32 -0.3
369,626 - CCNA_00353 0.32 -0.8
369,652 + CCNA_00353 0.34 -0.4
369,659 + CCNA_00353 0.35 +0.2
369,667 - CCNA_00353 0.35 -1.6
369,682 + CCNA_00353 0.37 -0.0
369,682 + CCNA_00353 0.37 +0.1
369,690 - CCNA_00353 0.37 +0.2
369,690 - CCNA_00353 0.37 -1.8
369,701 + CCNA_00353 0.38 -1.3
369,712 + CCNA_00353 0.39 -2.0
369,727 + CCNA_00353 0.41 -0.8
369,735 - CCNA_00353 0.42 -1.0
369,742 + CCNA_00353 0.42 +0.9
369,742 + CCNA_00353 0.42 -0.1
369,790 + CCNA_00353 0.47 +0.4
369,790 + CCNA_00353 0.47 -0.6
369,790 + CCNA_00353 0.47 -0.2
369,790 + CCNA_00353 0.47 -0.7
369,798 - CCNA_00353 0.47 -0.8
369,800 + CCNA_00353 0.47 +1.3
369,808 - CCNA_00353 0.48 -0.4
369,808 - CCNA_00353 0.48 -0.5
369,819 + CCNA_00353 0.49 -0.1
369,819 + CCNA_00353 0.49 +0.8
369,819 + CCNA_00353 0.49 -0.9
369,827 - CCNA_00353 0.50 -0.7
369,827 - CCNA_00353 0.50 +0.3
369,827 - CCNA_00353 0.50 -0.9
369,827 - CCNA_00353 0.50 -0.0
369,829 - CCNA_00353 0.50 +0.1
369,888 + CCNA_00353 0.56 +0.1
369,900 + CCNA_00353 0.57 -0.0
369,907 + CCNA_00353 0.57 +0.5
369,907 + CCNA_00353 0.57 -0.8
369,907 + CCNA_00353 0.57 +0.0
369,907 + CCNA_00353 0.57 +0.8
369,907 + CCNA_00353 0.57 +0.2
369,907 + CCNA_00353 0.57 +0.5
369,915 - CCNA_00353 0.58 -2.1
369,915 - CCNA_00353 0.58 +2.7
369,915 - CCNA_00353 0.58 -1.7
369,937 - CCNA_00353 0.60 +0.1
369,941 - CCNA_00353 0.60 -1.0
369,982 + CCNA_00353 0.64 +0.1
369,982 + CCNA_00353 0.64 -1.2
370,017 - CCNA_00353 0.67 -1.5
370,022 - CCNA_00353 0.68 +1.4
370,027 + CCNA_00353 0.68 -0.0
370,027 + CCNA_00353 0.68 +0.3
370,045 + CCNA_00353 0.70 -0.1
370,053 - CCNA_00353 0.71 -0.8
370,071 + CCNA_00353 0.72 -0.8
370,079 - CCNA_00353 0.73 -1.5
370,080 + CCNA_00353 0.73 -0.7
370,080 + CCNA_00353 0.73 -0.2
370,404 + +0.0
370,411 + +0.0
370,412 - -0.7
370,419 - -0.2
370,431 + +1.1
370,437 - -0.3
370,444 - +0.1
370,466 + -1.3
370,495 + -2.0
370,505 + -1.3
370,600 - CCNA_00354 0.22 -1.6
370,610 - CCNA_00354 0.23 -1.8
370,640 + CCNA_00354 0.28 -1.6
370,640 + CCNA_00354 0.28 -2.4
370,665 + CCNA_00354 0.31 -2.5
370,666 - CCNA_00354 0.31 -2.3
370,674 - CCNA_00354 0.32 -2.4
370,684 + CCNA_00354 0.34 -2.0
370,684 + CCNA_00354 0.34 -2.3
370,725 - CCNA_00354 0.40 -0.9
370,739 - CCNA_00354 0.42 -3.7
370,805 + CCNA_00354 0.51 -2.4
370,840 + CCNA_00354 0.56 -1.4
370,840 + CCNA_00354 0.56 -1.8
370,840 + CCNA_00354 0.56 -1.6
370,840 + CCNA_00354 0.56 -2.9
370,840 + CCNA_00354 0.56 -3.0
370,846 + CCNA_00354 0.57 -0.9
370,859 - CCNA_00354 0.58 -2.8
370,881 + CCNA_00354 0.62 -1.2
370,961 + CCNA_00354 0.73 -0.3
370,961 + CCNA_00354 0.73 +0.4
370,971 + CCNA_00354 0.74 +1.5
370,983 - CCNA_00354 0.76 -0.8
371,012 + CCNA_00354 0.80 -0.8
371,030 + CCNA_00354 0.83 -0.4
371,098 + +0.1
371,146 + +0.2
371,146 + +0.2
371,146 + +0.1
371,146 + -1.0
371,154 - +0.4
371,159 - +1.8
371,167 + -0.4
371,234 + +1.6
371,277 + -0.3
371,292 - +0.3
371,338 - -0.3
371,363 - -0.4
371,370 + +0.3
371,372 - -1.1
371,382 - +0.6
371,418 + +0.0
371,418 + -0.3
371,424 + -0.1
371,424 + +0.0
371,432 - -0.3
371,443 + -1.1
371,451 - CCNA_00355 0.10 +1.3
371,478 + CCNA_00355 0.12 -0.3
371,478 + CCNA_00355 0.12 -1.0
371,511 - CCNA_00355 0.15 -0.3
371,511 - CCNA_00355 0.15 +1.1
371,511 - CCNA_00355 0.15 -2.1
371,511 - CCNA_00355 0.15 +1.0
371,528 + CCNA_00355 0.16 +1.1
371,528 - CCNA_00355 0.16 -0.7
371,533 + CCNA_00355 0.17 -0.0
371,533 + CCNA_00355 0.17 -0.4
371,533 + CCNA_00355 0.17 +0.0
371,541 - CCNA_00355 0.18 -0.5
371,541 - CCNA_00355 0.18 +1.6
371,541 - CCNA_00355 0.18 -1.2
371,543 + CCNA_00355 0.18 +1.8
371,543 + CCNA_00355 0.18 -0.5
371,543 + CCNA_00355 0.18 +0.3
371,546 - CCNA_00355 0.18 +0.5
371,551 - CCNA_00355 0.18 +0.0
371,556 - CCNA_00355 0.19 -0.3
371,588 + CCNA_00355 0.21 +0.5
371,588 + CCNA_00355 0.21 -1.5
371,588 + CCNA_00355 0.21 +0.2
371,596 - CCNA_00355 0.22 +2.1
371,596 - CCNA_00355 0.22 -0.5
371,603 + CCNA_00355 0.22 -0.1
371,603 + CCNA_00355 0.22 -0.1
371,611 - CCNA_00355 0.23 -0.4
371,621 - CCNA_00355 0.24 +0.5
371,633 + CCNA_00355 0.25 -0.2
371,633 + CCNA_00355 0.25 -0.6
371,633 + CCNA_00355 0.25 -0.4
371,641 - CCNA_00355 0.26 -0.1
371,678 + CCNA_00355 0.29 -0.2
371,712 + CCNA_00355 0.31 -0.3
371,743 - CCNA_00355 0.34 +0.9
371,768 + CCNA_00355 0.36 +0.3
371,778 + CCNA_00355 0.37 +0.5
371,786 + CCNA_00355 0.37 +0.1
371,844 - CCNA_00355 0.42 -0.2
371,854 - CCNA_00355 0.43 +0.5
371,896 + CCNA_00355 0.46 -0.2
371,898 + CCNA_00355 0.46 -1.3
371,906 - CCNA_00355 0.47 +0.3
371,906 - CCNA_00355 0.47 +1.3
371,931 + CCNA_00355 0.49 +0.3
371,931 + CCNA_00355 0.49 +0.0
371,931 + CCNA_00355 0.49 -0.4
371,931 + CCNA_00355 0.49 +0.1
371,936 + CCNA_00355 0.49 +0.3
371,939 - CCNA_00355 0.49 -0.1
371,944 - CCNA_00355 0.50 -1.0
371,946 + CCNA_00355 0.50 +0.8
371,946 + CCNA_00355 0.50 +0.8
371,954 - +0.4
371,954 - CCNA_00355 0.51 +0.4
371,954 - CCNA_00355 0.51 +0.0
371,971 + CCNA_00355 0.52 -0.6
371,971 + CCNA_00355 0.52 +2.7
371,971 + CCNA_00355 0.52 +0.8
371,971 + CCNA_00355 0.52 -0.9
371,971 + CCNA_00355 0.52 +0.3
371,971 + CCNA_00355 0.52 +1.6
371,971 + CCNA_00355 0.52 -0.3
371,979 - CCNA_00355 0.53 -0.1
371,979 - CCNA_00355 0.53 -0.9
371,979 - CCNA_00355 0.53 -1.3
371,989 - CCNA_00355 0.53 -0.8
372,001 + CCNA_00355 0.54 +0.2
372,004 - CCNA_00355 0.55 +0.3
372,009 - CCNA_00355 0.55 -0.7
372,009 - CCNA_00355 0.55 +0.6
372,009 - CCNA_00355 0.55 -1.1
372,011 + CCNA_00355 0.55 -0.2
372,011 + CCNA_00355 0.55 +0.2
372,023 + CCNA_00355 0.56 -0.2
372,024 - CCNA_00355 0.56 +0.4
372,024 - CCNA_00355 0.56 -0.7
372,024 - CCNA_00355 0.56 -1.2
372,031 - CCNA_00355 0.57 +0.4
372,046 - CCNA_00355 0.58 +0.2

Or see this region's nucleotide sequence