Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00328

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00326 and CCNA_00327 are separated by 162 nucleotidesCCNA_00327 and CCNA_00328 are separated by 84 nucleotidesCCNA_00328 and CCNA_00329 are separated by 12 nucleotidesCCNA_00329 and CCNA_00330 are separated by 6 nucleotides CCNA_00326: CCNA_00326 - vegetatible incompatibility protein HET-E-1, at 338,634 to 339,665 _00326 CCNA_00327: CCNA_00327 - FMN-binding nitroreductase family enzyme, at 339,828 to 340,490 _00327 CCNA_00328: CCNA_00328 - monofunctional biosynthetic peptidoglycan transglycosylase MtgA, at 340,575 to 341,264 _00328 CCNA_00329: CCNA_00329 - ribosomal-protein-alanine acetyltransferase, at 341,277 to 341,825 _00329 CCNA_00330: CCNA_00330 - molybdenum-pterin binding protein mopB, at 341,832 to 342,602 _00330 Position (kb) 340 341 342Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 339.590 kb on - strandat 339.626 kb on - strandat 339.629 kb on - strandat 339.660 kb on + strandat 339.661 kb on - strandat 339.681 kb on + strandat 339.691 kb on + strandat 339.699 kb on - strandat 339.735 kb on + strandat 339.769 kb on + strandat 339.769 kb on + strandat 339.791 kb on + strandat 339.806 kb on + strandat 339.806 kb on + strandat 339.806 kb on + strandat 339.814 kb on - strandat 339.816 kb on + strandat 339.875 kb on + strandat 339.915 kb on - strand, within CCNA_00327at 339.925 kb on + strand, within CCNA_00327at 339.941 kb on - strand, within CCNA_00327at 339.953 kb on + strand, within CCNA_00327at 339.982 kb on - strand, within CCNA_00327at 339.982 kb on - strand, within CCNA_00327at 339.982 kb on - strand, within CCNA_00327at 339.997 kb on - strand, within CCNA_00327at 340.006 kb on - strand, within CCNA_00327at 340.008 kb on + strand, within CCNA_00327at 340.008 kb on + strand, within CCNA_00327at 340.008 kb on + strand, within CCNA_00327at 340.044 kb on + strand, within CCNA_00327at 340.045 kb on - strand, within CCNA_00327at 340.053 kb on - strand, within CCNA_00327at 340.053 kb on - strand, within CCNA_00327at 340.066 kb on - strand, within CCNA_00327at 340.074 kb on - strand, within CCNA_00327at 340.079 kb on - strand, within CCNA_00327at 340.131 kb on + strand, within CCNA_00327at 340.169 kb on + strand, within CCNA_00327at 340.177 kb on - strand, within CCNA_00327at 340.177 kb on - strand, within CCNA_00327at 340.177 kb on - strand, within CCNA_00327at 340.194 kb on - strand, within CCNA_00327at 340.198 kb on + strand, within CCNA_00327at 340.200 kb on + strand, within CCNA_00327at 340.200 kb on + strand, within CCNA_00327at 340.206 kb on - strand, within CCNA_00327at 340.206 kb on - strand, within CCNA_00327at 340.206 kb on - strand, within CCNA_00327at 340.225 kb on - strand, within CCNA_00327at 340.243 kb on + strand, within CCNA_00327at 340.251 kb on - strand, within CCNA_00327at 340.251 kb on - strand, within CCNA_00327at 340.272 kb on - strand, within CCNA_00327at 340.274 kb on + strand, within CCNA_00327at 340.280 kb on + strand, within CCNA_00327at 340.288 kb on - strand, within CCNA_00327at 340.291 kb on + strand, within CCNA_00327at 340.292 kb on - strand, within CCNA_00327at 340.338 kb on + strand, within CCNA_00327at 340.353 kb on - strand, within CCNA_00327at 340.353 kb on - strand, within CCNA_00327at 340.353 kb on - strand, within CCNA_00327at 340.359 kb on + strand, within CCNA_00327at 340.396 kb on + strand, within CCNA_00327at 340.396 kb on + strand, within CCNA_00327at 340.418 kb on + strand, within CCNA_00327at 340.426 kb on - strandat 340.475 kb on - strandat 340.486 kb on + strandat 340.507 kb on - strandat 340.521 kb on - strandat 340.521 kb on - strandat 340.545 kb on + strandat 340.554 kb on - strandat 340.572 kb on + strandat 340.614 kb on - strandat 340.694 kb on + strand, within CCNA_00328at 340.711 kb on - strand, within CCNA_00328at 340.713 kb on + strand, within CCNA_00328at 340.713 kb on + strand, within CCNA_00328at 340.721 kb on - strand, within CCNA_00328at 340.751 kb on + strand, within CCNA_00328at 340.751 kb on + strand, within CCNA_00328at 340.765 kb on - strand, within CCNA_00328at 340.805 kb on + strand, within CCNA_00328at 340.837 kb on - strand, within CCNA_00328at 340.849 kb on - strand, within CCNA_00328at 340.877 kb on + strand, within CCNA_00328at 340.907 kb on - strand, within CCNA_00328at 340.942 kb on + strand, within CCNA_00328at 340.942 kb on + strand, within CCNA_00328at 340.947 kb on - strand, within CCNA_00328at 340.956 kb on + strand, within CCNA_00328at 340.956 kb on + strand, within CCNA_00328at 340.956 kb on + strand, within CCNA_00328at 340.957 kb on - strand, within CCNA_00328at 340.964 kb on - strand, within CCNA_00328at 340.977 kb on + strand, within CCNA_00328at 340.982 kb on + strand, within CCNA_00328at 340.982 kb on + strand, within CCNA_00328at 340.982 kb on + strand, within CCNA_00328at 340.991 kb on + strand, within CCNA_00328at 341.021 kb on + strand, within CCNA_00328at 341.023 kb on + strand, within CCNA_00328at 341.052 kb on - strand, within CCNA_00328at 341.081 kb on - strand, within CCNA_00328at 341.088 kb on + strand, within CCNA_00328at 341.106 kb on - strand, within CCNA_00328at 341.114 kb on + strand, within CCNA_00328at 341.114 kb on + strand, within CCNA_00328at 341.116 kb on - strand, within CCNA_00328at 341.126 kb on - strand, within CCNA_00328at 341.139 kb on + strand, within CCNA_00328at 341.139 kb on + strand, within CCNA_00328at 341.147 kb on - strand, within CCNA_00328at 341.147 kb on - strand, within CCNA_00328at 341.149 kb on + strand, within CCNA_00328at 341.152 kb on - strand, within CCNA_00328at 341.157 kb on - strand, within CCNA_00328at 341.178 kb on + strand, within CCNA_00328at 341.185 kb on - strand, within CCNA_00328at 341.219 kb on + strandat 341.224 kb on - strandat 341.246 kb on + strandat 341.250 kb on - strandat 341.259 kb on + strandat 341.259 kb on + strandat 341.259 kb on + strandat 341.259 kb on + strandat 341.266 kb on + strandat 341.267 kb on - strandat 341.267 kb on - strandat 341.289 kb on - strandat 341.322 kb on - strandat 341.351 kb on - strand, within CCNA_00329at 341.351 kb on - strand, within CCNA_00329at 341.351 kb on - strand, within CCNA_00329at 341.351 kb on - strand, within CCNA_00329at 341.351 kb on - strand, within CCNA_00329at 341.366 kb on - strand, within CCNA_00329at 341.403 kb on + strand, within CCNA_00329at 341.421 kb on + strand, within CCNA_00329at 341.429 kb on + strand, within CCNA_00329at 341.457 kb on + strand, within CCNA_00329at 341.465 kb on - strand, within CCNA_00329at 341.475 kb on - strand, within CCNA_00329at 341.485 kb on - strand, within CCNA_00329at 341.496 kb on + strand, within CCNA_00329at 341.532 kb on - strand, within CCNA_00329at 341.534 kb on + strand, within CCNA_00329at 341.535 kb on + strand, within CCNA_00329at 341.543 kb on - strand, within CCNA_00329at 341.551 kb on + strand, within CCNA_00329at 341.568 kb on + strand, within CCNA_00329at 341.576 kb on - strand, within CCNA_00329at 341.584 kb on + strand, within CCNA_00329at 341.589 kb on + strand, within CCNA_00329at 341.589 kb on + strand, within CCNA_00329at 341.589 kb on + strand, within CCNA_00329at 341.597 kb on - strand, within CCNA_00329at 341.632 kb on + strand, within CCNA_00329at 341.637 kb on - strand, within CCNA_00329at 341.692 kb on - strand, within CCNA_00329at 341.699 kb on + strand, within CCNA_00329at 341.701 kb on - strand, within CCNA_00329at 341.777 kb on + strandat 341.780 kb on - strandat 341.780 kb on - strandat 341.791 kb on + strandat 341.791 kb on + strandat 341.828 kb on - strandat 341.830 kb on + strandat 341.830 kb on + strandat 341.838 kb on - strandat 341.838 kb on - strandat 341.838 kb on - strandat 341.865 kb on + strandat 341.898 kb on + strandat 341.905 kb on - strandat 341.971 kb on + strand, within CCNA_00330at 342.008 kb on + strand, within CCNA_00330at 342.008 kb on + strand, within CCNA_00330at 342.008 kb on + strand, within CCNA_00330at 342.008 kb on + strand, within CCNA_00330at 342.008 kb on + strand, within CCNA_00330at 342.021 kb on - strand, within CCNA_00330at 342.021 kb on - strand, within CCNA_00330at 342.026 kb on - strand, within CCNA_00330at 342.044 kb on - strand, within CCNA_00330at 342.049 kb on + strand, within CCNA_00330at 342.052 kb on - strand, within CCNA_00330at 342.093 kb on + strand, within CCNA_00330at 342.101 kb on + strand, within CCNA_00330at 342.101 kb on + strand, within CCNA_00330at 342.109 kb on - strand, within CCNA_00330at 342.109 kb on - strand, within CCNA_00330at 342.109 kb on - strand, within CCNA_00330at 342.143 kb on - strand, within CCNA_00330at 342.159 kb on + strand, within CCNA_00330at 342.182 kb on - strand, within CCNA_00330at 342.187 kb on - strand, within CCNA_00330at 342.203 kb on - strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.244 kb on + strand, within CCNA_00330at 342.244 kb on + strand, within CCNA_00330at 342.244 kb on + strand, within CCNA_00330at 342.244 kb on + strand, within CCNA_00330at 342.244 kb on - strand, within CCNA_00330at 342.244 kb on - strand, within CCNA_00330at 342.244 kb on - strand, within CCNA_00330at 342.244 kb on - strand, within CCNA_00330at 342.244 kb on - strand, within CCNA_00330at 342.252 kb on - strand, within CCNA_00330at 342.252 kb on - strand, within CCNA_00330at 342.252 kb on - strand, within CCNA_00330at 342.262 kb on - strand, within CCNA_00330

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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339,590 - -1.9
339,626 - -0.9
339,629 - -1.0
339,660 + +0.2
339,661 - -0.3
339,681 + -0.4
339,691 + +0.2
339,699 - +0.1
339,735 + +0.4
339,769 + +0.6
339,769 + -0.0
339,791 + +0.4
339,806 + +0.1
339,806 + -0.6
339,806 + -0.4
339,814 - +0.7
339,816 + -0.1
339,875 + +0.2
339,915 - CCNA_00327 0.13 +0.8
339,925 + CCNA_00327 0.15 -0.5
339,941 - CCNA_00327 0.17 +1.7
339,953 + CCNA_00327 0.19 +0.2
339,982 - CCNA_00327 0.23 -2.2
339,982 - CCNA_00327 0.23 +1.3
339,982 - CCNA_00327 0.23 +1.2
339,997 - CCNA_00327 0.25 -3.1
340,006 - CCNA_00327 0.27 -1.2
340,008 + CCNA_00327 0.27 -0.9
340,008 + CCNA_00327 0.27 +0.1
340,008 + CCNA_00327 0.27 -1.1
340,044 + CCNA_00327 0.33 +0.1
340,045 - CCNA_00327 0.33 +0.1
340,053 - CCNA_00327 0.34 +1.9
340,053 - CCNA_00327 0.34 -0.0
340,066 - CCNA_00327 0.36 +0.7
340,074 - CCNA_00327 0.37 +1.0
340,079 - CCNA_00327 0.38 +0.2
340,131 + CCNA_00327 0.46 -0.5
340,169 + CCNA_00327 0.51 -0.1
340,177 - CCNA_00327 0.53 +0.1
340,177 - CCNA_00327 0.53 -0.7
340,177 - CCNA_00327 0.53 +0.4
340,194 - CCNA_00327 0.55 -1.1
340,198 + CCNA_00327 0.56 -0.4
340,200 + CCNA_00327 0.56 -1.6
340,200 + CCNA_00327 0.56 -1.7
340,206 - CCNA_00327 0.57 -0.3
340,206 - CCNA_00327 0.57 -0.6
340,206 - CCNA_00327 0.57 +0.2
340,225 - CCNA_00327 0.60 +0.7
340,243 + CCNA_00327 0.63 -1.2
340,251 - CCNA_00327 0.64 +0.6
340,251 - CCNA_00327 0.64 +0.3
340,272 - CCNA_00327 0.67 +1.6
340,274 + CCNA_00327 0.67 -0.7
340,280 + CCNA_00327 0.68 +0.0
340,288 - CCNA_00327 0.69 +0.2
340,291 + CCNA_00327 0.70 -1.0
340,292 - CCNA_00327 0.70 -0.7
340,338 + CCNA_00327 0.77 +0.4
340,353 - CCNA_00327 0.79 -0.0
340,353 - CCNA_00327 0.79 +0.1
340,353 - CCNA_00327 0.79 +0.1
340,359 + CCNA_00327 0.80 -0.6
340,396 + CCNA_00327 0.86 +0.5
340,396 + CCNA_00327 0.86 -1.0
340,418 + CCNA_00327 0.89 -1.4
340,426 - +0.3
340,475 - -0.2
340,486 + -0.1
340,507 - +3.1
340,521 - +0.3
340,521 - -0.4
340,545 + -1.0
340,554 - +0.1
340,572 + -0.6
340,614 - -1.3
340,694 + CCNA_00328 0.17 -0.2
340,711 - CCNA_00328 0.20 -0.0
340,713 + CCNA_00328 0.20 -1.4
340,713 + CCNA_00328 0.20 -1.0
340,721 - CCNA_00328 0.21 +0.7
340,751 + CCNA_00328 0.26 -0.9
340,751 + CCNA_00328 0.26 +0.5
340,765 - CCNA_00328 0.28 -1.4
340,805 + CCNA_00328 0.33 -1.1
340,837 - CCNA_00328 0.38 +0.1
340,849 - CCNA_00328 0.40 -1.9
340,877 + CCNA_00328 0.44 -0.8
340,907 - CCNA_00328 0.48 -0.2
340,942 + CCNA_00328 0.53 -0.1
340,942 + CCNA_00328 0.53 -0.5
340,947 - CCNA_00328 0.54 -0.9
340,956 + CCNA_00328 0.55 -1.4
340,956 + CCNA_00328 0.55 -0.3
340,956 + CCNA_00328 0.55 -0.9
340,957 - CCNA_00328 0.55 -0.8
340,964 - CCNA_00328 0.56 -2.1
340,977 + CCNA_00328 0.58 -1.4
340,982 + CCNA_00328 0.59 -0.3
340,982 + CCNA_00328 0.59 -0.7
340,982 + CCNA_00328 0.59 -0.8
340,991 + CCNA_00328 0.60 -0.7
341,021 + CCNA_00328 0.65 +0.1
341,023 + CCNA_00328 0.65 -1.4
341,052 - CCNA_00328 0.69 -1.9
341,081 - CCNA_00328 0.73 -0.6
341,088 + CCNA_00328 0.74 -0.9
341,106 - CCNA_00328 0.77 -0.9
341,114 + CCNA_00328 0.78 -0.1
341,114 + CCNA_00328 0.78 -1.2
341,116 - CCNA_00328 0.78 -1.5
341,126 - CCNA_00328 0.80 -1.6
341,139 + CCNA_00328 0.82 -1.4
341,139 + CCNA_00328 0.82 -0.8
341,147 - CCNA_00328 0.83 -0.8
341,147 - CCNA_00328 0.83 -0.8
341,149 + CCNA_00328 0.83 -0.1
341,152 - CCNA_00328 0.84 -0.8
341,157 - CCNA_00328 0.84 -0.4
341,178 + CCNA_00328 0.87 -2.0
341,185 - CCNA_00328 0.88 -2.5
341,219 + -0.1
341,224 - -0.5
341,246 + -1.0
341,250 - +0.4
341,259 + +0.5
341,259 + +0.5
341,259 + -1.0
341,259 + +0.0
341,266 + -1.3
341,267 - -0.8
341,267 - +0.4
341,289 - +0.3
341,322 - +0.2
341,351 - CCNA_00329 0.13 -0.8
341,351 - CCNA_00329 0.13 -1.6
341,351 - CCNA_00329 0.13 -0.7
341,351 - CCNA_00329 0.13 +1.1
341,351 - CCNA_00329 0.13 -1.2
341,366 - CCNA_00329 0.16 -0.9
341,403 + CCNA_00329 0.23 -0.7
341,421 + CCNA_00329 0.26 -0.4
341,429 + CCNA_00329 0.28 +1.0
341,457 + CCNA_00329 0.33 +0.3
341,465 - CCNA_00329 0.34 +1.7
341,475 - CCNA_00329 0.36 -0.4
341,485 - CCNA_00329 0.38 -0.2
341,496 + CCNA_00329 0.40 -0.2
341,532 - CCNA_00329 0.46 -0.1
341,534 + CCNA_00329 0.47 -1.0
341,535 + CCNA_00329 0.47 +0.6
341,543 - CCNA_00329 0.48 -1.1
341,551 + CCNA_00329 0.50 +0.3
341,568 + CCNA_00329 0.53 -0.5
341,576 - CCNA_00329 0.54 +0.3
341,584 + CCNA_00329 0.56 -0.9
341,589 + CCNA_00329 0.57 -1.2
341,589 + CCNA_00329 0.57 -1.3
341,589 + CCNA_00329 0.57 -1.2
341,597 - CCNA_00329 0.58 +1.1
341,632 + CCNA_00329 0.65 +1.1
341,637 - CCNA_00329 0.66 -1.7
341,692 - CCNA_00329 0.76 -0.1
341,699 + CCNA_00329 0.77 +0.2
341,701 - CCNA_00329 0.77 -0.3
341,777 + +0.2
341,780 - -1.2
341,780 - -0.0
341,791 + +0.2
341,791 + -0.3
341,828 - -0.3
341,830 + -0.5
341,830 + -0.0
341,838 - +0.1
341,838 - -0.4
341,838 - -0.7
341,865 + +0.4
341,898 + +0.6
341,905 - +1.2
341,971 + CCNA_00330 0.18 -2.7
342,008 + CCNA_00330 0.23 -2.3
342,008 + CCNA_00330 0.23 +0.7
342,008 + CCNA_00330 0.23 -1.4
342,008 + CCNA_00330 0.23 +1.0
342,008 + CCNA_00330 0.23 -0.0
342,021 - CCNA_00330 0.25 -0.9
342,021 - CCNA_00330 0.25 -0.5
342,026 - CCNA_00330 0.25 -0.4
342,044 - CCNA_00330 0.27 +1.0
342,049 + CCNA_00330 0.28 -0.7
342,052 - CCNA_00330 0.29 -0.9
342,093 + CCNA_00330 0.34 -0.6
342,101 + CCNA_00330 0.35 +0.9
342,101 + CCNA_00330 0.35 -0.7
342,109 - CCNA_00330 0.36 -1.0
342,109 - CCNA_00330 0.36 -1.1
342,109 - CCNA_00330 0.36 -0.1
342,143 - CCNA_00330 0.40 -1.7
342,159 + CCNA_00330 0.42 +0.1
342,182 - CCNA_00330 0.45 -0.2
342,187 - CCNA_00330 0.46 -0.5
342,203 - CCNA_00330 0.48 +0.6
342,236 + CCNA_00330 0.52 +0.5
342,236 + CCNA_00330 0.52 -1.1
342,236 + CCNA_00330 0.52 -0.2
342,236 + CCNA_00330 0.52 -0.1
342,236 + CCNA_00330 0.52 -0.6
342,236 + CCNA_00330 0.52 +0.3
342,236 + CCNA_00330 0.52 +0.3
342,236 + CCNA_00330 0.52 -0.8
342,244 + CCNA_00330 0.53 -0.9
342,244 + CCNA_00330 0.53 -2.6
342,244 + CCNA_00330 0.53 -0.6
342,244 + CCNA_00330 0.53 -0.7
342,244 - CCNA_00330 0.53 +0.3
342,244 - CCNA_00330 0.53 +0.4
342,244 - CCNA_00330 0.53 +0.1
342,244 - CCNA_00330 0.53 -0.4
342,244 - CCNA_00330 0.53 -0.1
342,252 - CCNA_00330 0.54 -0.4
342,252 - CCNA_00330 0.54 +1.0
342,252 - CCNA_00330 0.54 +0.1
342,262 - CCNA_00330 0.56 +0.1

Or see this region's nucleotide sequence