Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00044

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00043 and CCNA_00044 are separated by 2 nucleotidesCCNA_00044 and CCNA_00045 are separated by 258 nucleotidesCCNA_00045 and CCNA_00046 are separated by 6 nucleotides CCNA_00043: CCNA_00043 - N utilization substance protein A NusA, at 46,622 to 48,268 _00043 CCNA_00044: CCNA_00044 - ribosome maturation protein RimP, at 48,271 to 48,846 _00044 CCNA_00045: CCNA_00045 - inorganic pyrophosphatase, at 49,105 to 49,638 _00045 CCNA_00046: CCNA_00046 - hypothetical protein, at 49,645 to 50,031 _00046 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 48.277 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.367 kb on - strand, within CCNA_00044at 48.367 kb on - strand, within CCNA_00044at 48.377 kb on - strand, within CCNA_00044at 48.385 kb on - strand, within CCNA_00044at 48.403 kb on - strand, within CCNA_00044at 48.438 kb on - strand, within CCNA_00044at 48.478 kb on - strand, within CCNA_00044at 48.478 kb on - strand, within CCNA_00044at 48.495 kb on - strand, within CCNA_00044at 48.576 kb on - strand, within CCNA_00044at 48.662 kb on - strand, within CCNA_00044at 49.019 kb on - strandat 49.039 kb on + strandat 49.648 kb on + strandat 49.648 kb on + strandat 49.656 kb on - strandat 49.673 kb on + strandat 49.681 kb on - strandat 49.681 kb on - strandat 49.681 kb on - strandat 49.726 kb on + strand, within CCNA_00046at 49.727 kb on - strand, within CCNA_00046at 49.736 kb on - strand, within CCNA_00046at 49.816 kb on - strand, within CCNA_00046at 49.837 kb on + strand, within CCNA_00046at 49.837 kb on + strand, within CCNA_00046at 49.840 kb on - strand, within CCNA_00046at 49.845 kb on - strand, within CCNA_00046at 49.845 kb on - strand, within CCNA_00046

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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48,277 - -1.8
48,302 - -1.9
48,302 - -0.4
48,302 - -0.6
48,302 - -1.6
48,302 - -0.6
48,302 - -0.7
48,302 - -1.2
48,302 - -0.1
48,367 - CCNA_00044 0.17 -1.0
48,367 - CCNA_00044 0.17 -2.2
48,377 - CCNA_00044 0.18 -1.3
48,385 - CCNA_00044 0.20 -0.7
48,403 - CCNA_00044 0.23 -0.0
48,438 - CCNA_00044 0.29 -1.0
48,478 - CCNA_00044 0.36 +0.1
48,478 - CCNA_00044 0.36 -1.6
48,495 - CCNA_00044 0.39 -1.1
48,576 - CCNA_00044 0.53 +0.3
48,662 - CCNA_00044 0.68 -1.4
49,019 - -0.0
49,039 + -1.0
49,648 + -0.0
49,648 + -0.7
49,656 - -0.5
49,673 + -0.4
49,681 - +0.3
49,681 - +0.2
49,681 - -0.9
49,726 + CCNA_00046 0.21 +1.2
49,727 - CCNA_00046 0.21 -0.6
49,736 - CCNA_00046 0.24 -0.8
49,816 - CCNA_00046 0.44 +0.8
49,837 + CCNA_00046 0.50 +2.0
49,837 + CCNA_00046 0.50 -0.9
49,840 - CCNA_00046 0.50 -0.3
49,845 - CCNA_00046 0.52 +0.4
49,845 - CCNA_00046 0.52 -0.6

Or see this region's nucleotide sequence