Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0362

Experiment: Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0361 and BT0362 are separated by 25 nucleotidesBT0362 and BT0363 are separated by 4 nucleotides BT0361: BT0361 - hypothetical protein (NCBI ptt file), at 433,972 to 435,777 BT0361 BT0362: BT0362 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 435,803 to 438,952 BT0362 BT0363: BT0363 - putative outer membrane protein (NCBI ptt file), at 438,957 to 440,732 BT0363 Position (kb) 435 436 437 438 439Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 434.876 kb on + strand, within BT0361at 434.876 kb on + strand, within BT0361at 434.876 kb on + strandat 434.928 kb on + strand, within BT0361at 434.929 kb on - strand, within BT0361at 434.933 kb on + strand, within BT0361at 434.933 kb on + strand, within BT0361at 435.050 kb on + strand, within BT0361at 435.078 kb on - strand, within BT0361at 435.298 kb on + strand, within BT0361at 435.384 kb on + strand, within BT0361at 435.423 kb on + strand, within BT0361at 435.445 kb on + strand, within BT0361at 435.491 kb on + strand, within BT0361at 435.556 kb on - strand, within BT0361at 435.556 kb on - strand, within BT0361at 435.758 kb on + strandat 435.758 kb on + strandat 435.860 kb on - strandat 435.861 kb on + strandat 435.952 kb on + strandat 436.053 kb on + strandat 436.545 kb on + strand, within BT0362at 436.607 kb on - strand, within BT0362at 436.881 kb on + strand, within BT0362at 436.881 kb on + strand, within BT0362at 436.884 kb on - strand, within BT0362at 436.995 kb on + strand, within BT0362at 437.109 kb on + strand, within BT0362at 437.113 kb on + strand, within BT0362at 437.150 kb on - strand, within BT0362at 437.165 kb on + strand, within BT0362at 437.169 kb on + strand, within BT0362at 437.173 kb on + strandat 437.188 kb on - strand, within BT0362at 437.282 kb on - strand, within BT0362at 437.282 kb on - strand, within BT0362at 437.290 kb on - strand, within BT0362at 437.325 kb on + strand, within BT0362at 437.382 kb on + strand, within BT0362at 437.386 kb on + strand, within BT0362at 437.473 kb on - strand, within BT0362at 437.473 kb on - strand, within BT0362at 437.554 kb on - strandat 437.635 kb on + strand, within BT0362at 437.668 kb on - strand, within BT0362at 437.698 kb on + strand, within BT0362at 437.711 kb on + strand, within BT0362at 437.712 kb on - strand, within BT0362at 437.712 kb on - strand, within BT0362at 437.734 kb on + strand, within BT0362at 437.826 kb on - strand, within BT0362at 437.910 kb on + strand, within BT0362at 437.914 kb on - strand, within BT0362at 438.135 kb on + strand, within BT0362at 438.135 kb on + strand, within BT0362at 438.142 kb on - strand, within BT0362at 438.209 kb on - strand, within BT0362at 438.240 kb on - strand, within BT0362at 438.273 kb on + strand, within BT0362at 438.274 kb on - strand, within BT0362at 438.277 kb on + strand, within BT0362at 438.308 kb on - strand, within BT0362at 438.417 kb on + strand, within BT0362at 438.418 kb on - strand, within BT0362at 438.418 kb on - strand, within BT0362at 438.422 kb on - strand, within BT0362at 438.460 kb on - strand, within BT0362at 438.460 kb on - strand, within BT0362at 438.460 kb on - strand, within BT0362at 438.467 kb on + strand, within BT0362at 438.467 kb on + strand, within BT0362at 438.468 kb on - strand, within BT0362at 438.610 kb on - strand, within BT0362at 438.696 kb on - strandat 438.958 kb on + strandat 438.999 kb on + strandat 439.065 kb on - strandat 439.115 kb on + strandat 439.155 kb on + strand, within BT0363at 439.155 kb on + strand, within BT0363at 439.308 kb on + strand, within BT0363at 439.351 kb on + strand, within BT0363at 439.397 kb on - strand, within BT0363at 439.523 kb on + strand, within BT0363at 439.549 kb on + strand, within BT0363at 439.708 kb on + strand, within BT0363at 439.800 kb on + strand, within BT0363at 439.868 kb on + strand, within BT0363

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.1 mM
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434,876 + BT0361 0.50 -2.8
434,876 + BT0361 0.50 -0.6
434,876 + -0.0
434,928 + BT0361 0.53 -0.8
434,929 - BT0361 0.53 -0.6
434,933 + BT0361 0.53 -0.6
434,933 + BT0361 0.53 -1.6
435,050 + BT0361 0.60 -0.2
435,078 - BT0361 0.61 -0.0
435,298 + BT0361 0.73 -0.0
435,384 + BT0361 0.78 -1.0
435,423 + BT0361 0.80 -1.0
435,445 + BT0361 0.82 -2.3
435,491 + BT0361 0.84 -0.6
435,556 - BT0361 0.88 -0.3
435,556 - BT0361 0.88 -0.2
435,758 + +1.6
435,758 + +0.6
435,860 - -2.6
435,861 + -0.0
435,952 + -1.8
436,053 + -1.0
436,545 + BT0362 0.24 -2.0
436,607 - BT0362 0.26 -0.6
436,881 + BT0362 0.34 -1.8
436,881 + BT0362 0.34 -0.1
436,884 - BT0362 0.34 -0.4
436,995 + BT0362 0.38 -3.2
437,109 + BT0362 0.41 -1.0
437,113 + BT0362 0.42 -1.8
437,150 - BT0362 0.43 -2.3
437,165 + BT0362 0.43 +0.4
437,169 + BT0362 0.43 -0.5
437,173 + -0.0
437,188 - BT0362 0.44 -0.8
437,282 - BT0362 0.47 -1.5
437,282 - BT0362 0.47 +0.6
437,290 - BT0362 0.47 -0.0
437,325 + BT0362 0.48 -0.0
437,382 + BT0362 0.50 +0.1
437,386 + BT0362 0.50 -1.8
437,473 - BT0362 0.53 -0.3
437,473 - BT0362 0.53 -0.0
437,554 - -1.0
437,635 + BT0362 0.58 -3.0
437,668 - BT0362 0.59 -0.0
437,698 + BT0362 0.60 +0.8
437,711 + BT0362 0.61 -0.6
437,712 - BT0362 0.61 -1.8
437,712 - BT0362 0.61 +1.0
437,734 + BT0362 0.61 +1.3
437,826 - BT0362 0.64 +1.0
437,910 + BT0362 0.67 -1.8
437,914 - BT0362 0.67 -0.7
438,135 + BT0362 0.74 -2.3
438,135 + BT0362 0.74 +0.6
438,142 - BT0362 0.74 -0.4
438,209 - BT0362 0.76 +1.0
438,240 - BT0362 0.77 -1.6
438,273 + BT0362 0.78 +2.0
438,274 - BT0362 0.78 -0.5
438,277 + BT0362 0.79 +0.6
438,308 - BT0362 0.80 -0.8
438,417 + BT0362 0.83 -0.0
438,418 - BT0362 0.83 +1.0
438,418 - BT0362 0.83 -1.8
438,422 - BT0362 0.83 +2.0
438,460 - BT0362 0.84 -1.0
438,460 - BT0362 0.84 +2.0
438,460 - BT0362 0.84 +0.7
438,467 + BT0362 0.85 -1.6
438,467 + BT0362 0.85 -0.0
438,468 - BT0362 0.85 +1.0
438,610 - BT0362 0.89 +2.0
438,696 - -1.0
438,958 + -2.6
438,999 + -0.8
439,065 - -0.0
439,115 + -1.6
439,155 + BT0363 0.11 +2.6
439,155 + BT0363 0.11 +0.7
439,308 + BT0363 0.20 -1.0
439,351 + BT0363 0.22 -1.8
439,397 - BT0363 0.25 -0.0
439,523 + BT0363 0.32 -1.0
439,549 + BT0363 0.33 -1.6
439,708 + BT0363 0.42 +0.3
439,800 + BT0363 0.47 -2.0
439,868 + BT0363 0.51 -0.4

Or see this region's nucleotide sequence