Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1221

Experiment: MoLS4 with L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1219 and DVU1220 are separated by 166 nucleotidesDVU1220 and DVU1221 overlap by 20 nucleotidesDVU1221 and DVU1222 overlap by 4 nucleotidesDVU1222 and DVU1223 are separated by 167 nucleotides DVU1219: DVU1219 - conserved hypothetical protein (TIGR), at 1,309,280 to 1,311,475 DVU1219 DVU1220: DVU1220 - nitroreductase family protein (TIGR), at 1,311,642 to 1,312,466 DVU1220 DVU1221: DVU1221 - hypothetical protein (TIGR), at 1,312,447 to 1,312,692 DVU1221 DVU1222: DVU1222 - hypothetical protein (TIGR), at 1,312,689 to 1,313,216 DVU1222 DVU1223: DVU1223 - conserved hypothetical protein (TIGR), at 1,313,384 to 1,315,141 DVU1223 Position (kb) 1312 1313Strain fitness (log2 ratio) -1 0 1 2at 1311.495 kb on + strandat 1311.495 kb on + strandat 1311.495 kb on + strandat 1311.503 kb on - strandat 1311.503 kb on - strandat 1311.516 kb on - strandat 1311.557 kb on + strandat 1311.557 kb on + strandat 1311.565 kb on - strandat 1311.586 kb on + strandat 1311.596 kb on - strandat 1311.739 kb on - strand, within DVU1220at 1311.809 kb on + strand, within DVU1220at 1311.814 kb on + strand, within DVU1220at 1311.833 kb on - strand, within DVU1220at 1311.949 kb on + strand, within DVU1220at 1312.040 kb on + strand, within DVU1220at 1312.169 kb on - strand, within DVU1220at 1312.169 kb on - strand, within DVU1220at 1312.185 kb on + strand, within DVU1220at 1312.288 kb on - strand, within DVU1220at 1312.295 kb on - strand, within DVU1220at 1312.319 kb on - strand, within DVU1220at 1312.361 kb on - strand, within DVU1220at 1312.379 kb on + strand, within DVU1220at 1312.379 kb on + strand, within DVU1220at 1312.387 kb on - strandat 1312.469 kb on + strandat 1312.550 kb on - strand, within DVU1221at 1312.665 kb on + strand, within DVU1221at 1312.720 kb on - strandat 1312.840 kb on + strand, within DVU1222at 1312.858 kb on + strand, within DVU1222at 1312.871 kb on - strand, within DVU1222at 1313.004 kb on - strand, within DVU1222at 1313.033 kb on + strand, within DVU1222at 1313.111 kb on - strand, within DVU1222at 1313.244 kb on + strandat 1313.352 kb on + strandat 1313.390 kb on + strandat 1313.390 kb on + strandat 1313.480 kb on - strandat 1313.514 kb on - strandat 1313.514 kb on - strandat 1313.516 kb on + strandat 1313.517 kb on - strandat 1313.529 kb on - strandat 1313.537 kb on + strandat 1313.543 kb on - strandat 1313.560 kb on - strand, within DVU1223at 1313.562 kb on + strand, within DVU1223at 1313.609 kb on + strand, within DVU1223at 1313.628 kb on + strand, within DVU1223

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine (N)
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1,311,495 + -0.2
1,311,495 + -0.2
1,311,495 + +0.0
1,311,503 - -0.2
1,311,503 - -0.4
1,311,516 - +0.2
1,311,557 + -0.1
1,311,557 + -1.2
1,311,565 - +0.0
1,311,586 + +0.1
1,311,596 - -0.6
1,311,739 - DVU1220 0.12 -0.1
1,311,809 + DVU1220 0.20 -0.2
1,311,814 + DVU1220 0.21 -0.5
1,311,833 - DVU1220 0.23 -0.0
1,311,949 + DVU1220 0.37 +0.0
1,312,040 + DVU1220 0.48 -0.2
1,312,169 - DVU1220 0.64 +0.1
1,312,169 - DVU1220 0.64 +0.4
1,312,185 + DVU1220 0.66 -0.2
1,312,288 - DVU1220 0.78 +0.0
1,312,295 - DVU1220 0.79 -0.7
1,312,319 - DVU1220 0.82 +0.2
1,312,361 - DVU1220 0.87 +0.0
1,312,379 + DVU1220 0.89 -0.1
1,312,379 + DVU1220 0.89 -0.1
1,312,387 - +0.0
1,312,469 + -0.2
1,312,550 - DVU1221 0.42 +2.4
1,312,665 + DVU1221 0.89 +0.1
1,312,720 - +1.0
1,312,840 + DVU1222 0.29 +1.4
1,312,858 + DVU1222 0.32 +0.0
1,312,871 - DVU1222 0.34 -0.0
1,313,004 - DVU1222 0.60 +0.3
1,313,033 + DVU1222 0.65 -1.1
1,313,111 - DVU1222 0.80 +0.1
1,313,244 + -1.2
1,313,352 + -0.1
1,313,390 + -0.4
1,313,390 + -0.0
1,313,480 - -0.3
1,313,514 - +0.8
1,313,514 - +0.2
1,313,516 + -0.3
1,313,517 - +0.3
1,313,529 - +0.0
1,313,537 + -0.1
1,313,543 - -0.8
1,313,560 - DVU1223 0.10 +0.4
1,313,562 + DVU1223 0.10 +0.1
1,313,609 + DVU1223 0.13 +0.1
1,313,628 + DVU1223 0.14 -0.3

Or see this region's nucleotide sequence