Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06990 and PGA1_c07000 are separated by 15 nucleotides PGA1_c07000 and PGA1_c07010 are separated by 234 nucleotides PGA1_c07010 and PGA1_c07020 are separated by 127 nucleotides
PGA1_c06990: PGA1_c06990 - 50S ribosomal protein L35, at 718,735 to 718,935
_c06990
PGA1_c07000: PGA1_c07000 - 50S ribosomal protein L20, at 718,951 to 719,316
_c07000
PGA1_c07010: PGA1_c07010 - phenylalanyl-tRNA synthetase alpha chain, at 719,551 to 720,624
_c07010
PGA1_c07020: PGA1_c07020 - Poly(3-hydroxybutyrate) depolymerase, at 720,752 to 721,573
_c07020
Position (kb) 719
720
721 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 718.576 kb on + strand at 718.586 kb on + strand at 719.509 kb on + strand at 719.536 kb on + strand at 720.584 kb on + strand at 720.584 kb on + strand at 720.609 kb on - strand at 720.618 kb on - strand at 720.658 kb on + strand at 720.758 kb on + strand at 720.772 kb on + strand at 720.780 kb on - strand at 720.787 kb on + strand at 720.790 kb on - strand at 720.805 kb on - strand at 720.826 kb on + strand at 720.826 kb on + strand at 720.866 kb on - strand, within PGA1_c07020 at 720.879 kb on + strand, within PGA1_c07020 at 720.912 kb on + strand, within PGA1_c07020 at 720.912 kb on + strand, within PGA1_c07020 at 720.914 kb on - strand, within PGA1_c07020 at 720.914 kb on - strand, within PGA1_c07020 at 720.920 kb on - strand, within PGA1_c07020 at 720.988 kb on + strand, within PGA1_c07020 at 721.037 kb on - strand, within PGA1_c07020 at 721.079 kb on + strand, within PGA1_c07020 at 721.100 kb on + strand, within PGA1_c07020 at 721.100 kb on + strand, within PGA1_c07020 at 721.100 kb on + strand, within PGA1_c07020 at 721.100 kb on + strand, within PGA1_c07020 at 721.100 kb on + strand, within PGA1_c07020 at 721.143 kb on + strand, within PGA1_c07020 at 721.151 kb on - strand, within PGA1_c07020 at 721.211 kb on + strand, within PGA1_c07020 at 721.253 kb on + strand, within PGA1_c07020 at 721.369 kb on - strand, within PGA1_c07020 at 721.459 kb on - strand, within PGA1_c07020 at 721.459 kb on - strand, within PGA1_c07020 at 721.479 kb on + strand, within PGA1_c07020 at 721.499 kb on + strand at 721.574 kb on + strand at 721.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 718,576 + +0.0 718,586 + +0.1 719,509 + +0.9 719,536 + +0.2 720,584 + -0.1 720,584 + -0.9 720,609 - -0.7 720,618 - +0.2 720,658 + +0.1 720,758 + -0.1 720,772 + +0.4 720,780 - +0.8 720,787 + -0.5 720,790 - +0.5 720,805 - +0.3 720,826 + -0.7 720,826 + -0.7 720,866 - PGA1_c07020 0.14 -1.9 720,879 + PGA1_c07020 0.15 +0.4 720,912 + PGA1_c07020 0.19 +0.9 720,912 + PGA1_c07020 0.19 +1.1 720,914 - PGA1_c07020 0.20 +0.9 720,914 - PGA1_c07020 0.20 +1.5 720,920 - PGA1_c07020 0.20 -0.3 720,988 + PGA1_c07020 0.29 -1.0 721,037 - PGA1_c07020 0.35 +1.2 721,079 + PGA1_c07020 0.40 -0.8 721,100 + PGA1_c07020 0.42 +0.1 721,100 + PGA1_c07020 0.42 +0.2 721,100 + PGA1_c07020 0.42 -0.0 721,100 + PGA1_c07020 0.42 +0.3 721,100 + PGA1_c07020 0.42 +0.6 721,143 + PGA1_c07020 0.48 -2.4 721,151 - PGA1_c07020 0.49 -0.3 721,211 + PGA1_c07020 0.56 +0.9 721,253 + PGA1_c07020 0.61 +1.2 721,369 - PGA1_c07020 0.75 +0.1 721,459 - PGA1_c07020 0.86 -0.5 721,459 - PGA1_c07020 0.86 +1.2 721,479 + PGA1_c07020 0.88 +1.0 721,499 + -0.9 721,574 + +0.6 721,591 + +3.2
Or see this region's nucleotide sequence