Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05460

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05450 and PGA1_c05460 are separated by 197 nucleotidesPGA1_c05460 and PGA1_c05470 are separated by 84 nucleotidesPGA1_c05470 and PGA1_c05480 are separated by 154 nucleotides PGA1_c05450: PGA1_c05450 - Predicted membrane protein, at 556,596 to 557,828 _c05450 PGA1_c05460: PGA1_c05460 - transcriptional regulator, LysR family, at 558,026 to 559,000 _c05460 PGA1_c05470: PGA1_c05470 - hydroxyisourate hydrolase, at 559,085 to 559,456 _c05470 PGA1_c05480: PGA1_c05480 - OHCU decarboxylase domain-containing protein, at 559,611 to 561,026 _c05480 Position (kb) 558 559 560Strain fitness (log2 ratio) -1 0 1 2at 557.078 kb on - strand, within PGA1_c05450at 557.132 kb on + strand, within PGA1_c05450at 557.255 kb on + strand, within PGA1_c05450at 557.271 kb on - strand, within PGA1_c05450at 557.285 kb on - strand, within PGA1_c05450at 557.314 kb on + strand, within PGA1_c05450at 557.340 kb on - strand, within PGA1_c05450at 557.378 kb on - strand, within PGA1_c05450at 557.396 kb on + strand, within PGA1_c05450at 557.419 kb on - strand, within PGA1_c05450at 557.457 kb on - strand, within PGA1_c05450at 557.472 kb on - strand, within PGA1_c05450at 557.485 kb on + strand, within PGA1_c05450at 557.485 kb on + strand, within PGA1_c05450at 557.485 kb on + strand, within PGA1_c05450at 557.493 kb on - strand, within PGA1_c05450at 557.493 kb on - strand, within PGA1_c05450at 557.493 kb on - strand, within PGA1_c05450at 557.493 kb on - strand, within PGA1_c05450at 557.510 kb on + strand, within PGA1_c05450at 557.515 kb on + strand, within PGA1_c05450at 557.518 kb on - strand, within PGA1_c05450at 557.518 kb on - strand, within PGA1_c05450at 557.518 kb on - strand, within PGA1_c05450at 557.523 kb on - strand, within PGA1_c05450at 557.552 kb on - strand, within PGA1_c05450at 557.558 kb on + strand, within PGA1_c05450at 557.563 kb on - strand, within PGA1_c05450at 557.597 kb on - strand, within PGA1_c05450at 557.701 kb on + strand, within PGA1_c05450at 557.811 kb on - strandat 557.862 kb on + strandat 557.877 kb on + strandat 557.917 kb on + strandat 557.982 kb on + strandat 557.988 kb on - strandat 558.023 kb on + strandat 558.024 kb on - strandat 558.044 kb on + strandat 558.051 kb on + strandat 558.059 kb on - strandat 558.071 kb on - strandat 558.101 kb on - strandat 558.123 kb on + strandat 558.257 kb on - strand, within PGA1_c05460at 558.257 kb on - strand, within PGA1_c05460at 558.273 kb on - strand, within PGA1_c05460at 558.320 kb on + strand, within PGA1_c05460at 558.320 kb on + strand, within PGA1_c05460at 558.451 kb on - strand, within PGA1_c05460at 558.520 kb on + strand, within PGA1_c05460at 558.525 kb on - strand, within PGA1_c05460at 558.587 kb on + strand, within PGA1_c05460at 558.587 kb on + strand, within PGA1_c05460at 558.595 kb on - strand, within PGA1_c05460at 558.597 kb on + strand, within PGA1_c05460at 558.597 kb on + strand, within PGA1_c05460at 558.605 kb on - strand, within PGA1_c05460at 558.605 kb on - strand, within PGA1_c05460at 558.641 kb on + strand, within PGA1_c05460at 558.641 kb on + strand, within PGA1_c05460at 558.651 kb on + strand, within PGA1_c05460at 558.654 kb on - strand, within PGA1_c05460at 558.659 kb on - strand, within PGA1_c05460at 558.659 kb on - strand, within PGA1_c05460at 558.674 kb on - strand, within PGA1_c05460at 558.731 kb on + strand, within PGA1_c05460at 558.892 kb on + strand, within PGA1_c05460at 558.900 kb on - strand, within PGA1_c05460at 558.900 kb on - strand, within PGA1_c05460at 558.952 kb on + strandat 558.974 kb on + strandat 559.003 kb on - strandat 559.392 kb on + strand, within PGA1_c05470at 559.392 kb on + strand, within PGA1_c05470at 559.412 kb on + strand, within PGA1_c05470at 559.489 kb on - strandat 559.505 kb on + strandat 559.505 kb on + strandat 559.505 kb on + strandat 559.512 kb on + strandat 559.512 kb on + strandat 559.520 kb on - strandat 559.567 kb on - strandat 559.729 kb on + strandat 559.753 kb on + strand, within PGA1_c05480at 559.775 kb on - strand, within PGA1_c05480at 559.834 kb on - strand, within PGA1_c05480at 559.874 kb on + strand, within PGA1_c05480at 559.933 kb on + strand, within PGA1_c05480at 559.933 kb on + strand, within PGA1_c05480

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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557,078 - PGA1_c05450 0.39 +0.1
557,132 + PGA1_c05450 0.43 +0.6
557,255 + PGA1_c05450 0.53 -0.4
557,271 - PGA1_c05450 0.55 +1.9
557,285 - PGA1_c05450 0.56 +1.4
557,314 + PGA1_c05450 0.58 +0.8
557,340 - PGA1_c05450 0.60 +0.1
557,378 - PGA1_c05450 0.63 +0.8
557,396 + PGA1_c05450 0.65 +0.8
557,419 - PGA1_c05450 0.67 +1.2
557,457 - PGA1_c05450 0.70 +1.0
557,472 - PGA1_c05450 0.71 -0.5
557,485 + PGA1_c05450 0.72 +0.7
557,485 + PGA1_c05450 0.72 +0.8
557,485 + PGA1_c05450 0.72 +1.2
557,493 - PGA1_c05450 0.73 +1.0
557,493 - PGA1_c05450 0.73 -0.9
557,493 - PGA1_c05450 0.73 +1.6
557,493 - PGA1_c05450 0.73 -0.1
557,510 + PGA1_c05450 0.74 +1.6
557,515 + PGA1_c05450 0.75 +1.4
557,518 - PGA1_c05450 0.75 -1.6
557,518 - PGA1_c05450 0.75 +1.4
557,518 - PGA1_c05450 0.75 +1.6
557,523 - PGA1_c05450 0.75 +1.2
557,552 - PGA1_c05450 0.78 +0.2
557,558 + PGA1_c05450 0.78 +1.4
557,563 - PGA1_c05450 0.78 +0.6
557,597 - PGA1_c05450 0.81 +2.6
557,701 + PGA1_c05450 0.90 -1.1
557,811 - +0.1
557,862 + +1.0
557,877 + +1.3
557,917 + +0.4
557,982 + -0.7
557,988 - +0.5
558,023 + +0.4
558,024 - +1.7
558,044 + +1.7
558,051 + -0.7
558,059 - +0.9
558,071 - +0.1
558,101 - +1.7
558,123 + +1.4
558,257 - PGA1_c05460 0.24 -0.5
558,257 - PGA1_c05460 0.24 +0.9
558,273 - PGA1_c05460 0.25 +1.7
558,320 + PGA1_c05460 0.30 +0.7
558,320 + PGA1_c05460 0.30 +1.0
558,451 - PGA1_c05460 0.44 -0.0
558,520 + PGA1_c05460 0.51 +1.7
558,525 - PGA1_c05460 0.51 +1.1
558,587 + PGA1_c05460 0.58 +0.8
558,587 + PGA1_c05460 0.58 +1.5
558,595 - PGA1_c05460 0.58 +1.7
558,597 + PGA1_c05460 0.59 +0.4
558,597 + PGA1_c05460 0.59 +1.1
558,605 - PGA1_c05460 0.59 +2.7
558,605 - PGA1_c05460 0.59 +0.5
558,641 + PGA1_c05460 0.63 -0.3
558,641 + PGA1_c05460 0.63 +1.5
558,651 + PGA1_c05460 0.64 +0.6
558,654 - PGA1_c05460 0.64 +0.8
558,659 - PGA1_c05460 0.65 -0.4
558,659 - PGA1_c05460 0.65 +1.3
558,674 - PGA1_c05460 0.66 +1.2
558,731 + PGA1_c05460 0.72 -0.8
558,892 + PGA1_c05460 0.89 +0.1
558,900 - PGA1_c05460 0.90 +0.1
558,900 - PGA1_c05460 0.90 +0.3
558,952 + -0.5
558,974 + -1.6
559,003 - +0.7
559,392 + PGA1_c05470 0.83 +0.4
559,392 + PGA1_c05470 0.83 +0.8
559,412 + PGA1_c05470 0.88 +0.3
559,489 - -0.1
559,505 + +1.0
559,505 + +0.7
559,505 + +0.3
559,512 + +1.1
559,512 + -1.6
559,520 - +0.5
559,567 - -0.6
559,729 + +0.1
559,753 + PGA1_c05480 0.10 +0.7
559,775 - PGA1_c05480 0.12 +2.1
559,834 - PGA1_c05480 0.16 -0.6
559,874 + PGA1_c05480 0.19 +1.1
559,933 + PGA1_c05480 0.23 +0.6
559,933 + PGA1_c05480 0.23 +0.9

Or see this region's nucleotide sequence