Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05450

Experiment: Putrescine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c05440 and PGA1_c05450 are separated by 147 nucleotidesPGA1_c05450 and PGA1_c05460 are separated by 197 nucleotides PGA1_c05440: PGA1_c05440 - surface antigen-like protein, at 554,505 to 556,448 _c05440 PGA1_c05450: PGA1_c05450 - Predicted membrane protein, at 556,596 to 557,828 _c05450 PGA1_c05460: PGA1_c05460 - transcriptional regulator, LysR family, at 558,026 to 559,000 _c05460 Position (kb) 556 557 558Strain fitness (log2 ratio) -2 -1 0 1 2at 555.606 kb on + strand, within PGA1_c05440at 555.672 kb on - strand, within PGA1_c05440at 555.675 kb on + strand, within PGA1_c05440at 555.780 kb on - strand, within PGA1_c05440at 555.784 kb on + strand, within PGA1_c05440at 555.791 kb on + strand, within PGA1_c05440at 555.842 kb on + strand, within PGA1_c05440at 555.870 kb on + strand, within PGA1_c05440at 556.035 kb on + strand, within PGA1_c05440at 556.083 kb on - strand, within PGA1_c05440at 556.093 kb on - strand, within PGA1_c05440at 556.145 kb on - strand, within PGA1_c05440at 556.338 kb on - strandat 556.355 kb on + strandat 556.356 kb on + strandat 556.428 kb on - strandat 556.441 kb on - strandat 556.441 kb on - strandat 556.445 kb on + strandat 556.445 kb on + strandat 556.469 kb on + strandat 556.477 kb on - strandat 556.594 kb on + strandat 556.599 kb on + strandat 556.602 kb on - strandat 556.602 kb on - strandat 556.704 kb on + strandat 556.707 kb on - strandat 556.712 kb on - strandat 556.755 kb on + strand, within PGA1_c05450at 556.756 kb on - strand, within PGA1_c05450at 556.787 kb on + strand, within PGA1_c05450at 556.804 kb on + strand, within PGA1_c05450at 556.812 kb on - strand, within PGA1_c05450at 556.838 kb on + strand, within PGA1_c05450at 556.846 kb on + strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.860 kb on - strand, within PGA1_c05450at 556.876 kb on - strand, within PGA1_c05450at 556.876 kb on - strand, within PGA1_c05450at 556.881 kb on - strand, within PGA1_c05450at 556.916 kb on + strand, within PGA1_c05450at 556.936 kb on - strand, within PGA1_c05450at 556.956 kb on - strand, within PGA1_c05450at 557.020 kb on - strand, within PGA1_c05450at 557.078 kb on - strand, within PGA1_c05450at 557.132 kb on + strand, within PGA1_c05450at 557.255 kb on + strand, within PGA1_c05450at 557.271 kb on - strand, within PGA1_c05450at 557.285 kb on - strand, within PGA1_c05450at 557.314 kb on + strand, within PGA1_c05450at 557.340 kb on - strand, within PGA1_c05450at 557.378 kb on - strand, within PGA1_c05450at 557.396 kb on + strand, within PGA1_c05450at 557.419 kb on - strand, within PGA1_c05450at 557.457 kb on - strand, within PGA1_c05450at 557.472 kb on - strand, within PGA1_c05450at 557.485 kb on + strand, within PGA1_c05450at 557.485 kb on + strand, within PGA1_c05450at 557.485 kb on + strand, within PGA1_c05450at 557.493 kb on - strand, within PGA1_c05450at 557.493 kb on - strand, within PGA1_c05450at 557.493 kb on - strand, within PGA1_c05450at 557.493 kb on - strand, within PGA1_c05450at 557.510 kb on + strand, within PGA1_c05450at 557.515 kb on + strand, within PGA1_c05450at 557.518 kb on - strand, within PGA1_c05450at 557.518 kb on - strand, within PGA1_c05450at 557.518 kb on - strand, within PGA1_c05450at 557.523 kb on - strand, within PGA1_c05450at 557.552 kb on - strand, within PGA1_c05450at 557.558 kb on + strand, within PGA1_c05450at 557.563 kb on - strand, within PGA1_c05450at 557.597 kb on - strand, within PGA1_c05450at 557.701 kb on + strand, within PGA1_c05450at 557.811 kb on - strandat 557.862 kb on + strandat 557.877 kb on + strandat 557.917 kb on + strandat 557.982 kb on + strandat 557.988 kb on - strandat 558.023 kb on + strandat 558.024 kb on - strandat 558.044 kb on + strandat 558.051 kb on + strandat 558.059 kb on - strandat 558.071 kb on - strandat 558.101 kb on - strandat 558.123 kb on + strandat 558.257 kb on - strand, within PGA1_c05460at 558.257 kb on - strand, within PGA1_c05460at 558.273 kb on - strand, within PGA1_c05460at 558.320 kb on + strand, within PGA1_c05460at 558.320 kb on + strand, within PGA1_c05460at 558.451 kb on - strand, within PGA1_c05460at 558.520 kb on + strand, within PGA1_c05460at 558.525 kb on - strand, within PGA1_c05460at 558.587 kb on + strand, within PGA1_c05460at 558.587 kb on + strand, within PGA1_c05460at 558.595 kb on - strand, within PGA1_c05460at 558.597 kb on + strand, within PGA1_c05460at 558.597 kb on + strand, within PGA1_c05460at 558.605 kb on - strand, within PGA1_c05460at 558.605 kb on - strand, within PGA1_c05460at 558.641 kb on + strand, within PGA1_c05460at 558.641 kb on + strand, within PGA1_c05460at 558.651 kb on + strand, within PGA1_c05460at 558.654 kb on - strand, within PGA1_c05460at 558.659 kb on - strand, within PGA1_c05460at 558.659 kb on - strand, within PGA1_c05460at 558.674 kb on - strand, within PGA1_c05460at 558.731 kb on + strand, within PGA1_c05460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
remove
555,606 + PGA1_c05440 0.57 -1.7
555,672 - PGA1_c05440 0.60 +0.3
555,675 + PGA1_c05440 0.60 -1.1
555,780 - PGA1_c05440 0.66 -1.0
555,784 + PGA1_c05440 0.66 -2.0
555,791 + PGA1_c05440 0.66 -1.5
555,842 + PGA1_c05440 0.69 +0.3
555,870 + PGA1_c05440 0.70 -0.6
556,035 + PGA1_c05440 0.79 -1.1
556,083 - PGA1_c05440 0.81 -1.7
556,093 - PGA1_c05440 0.82 -0.5
556,145 - PGA1_c05440 0.84 -2.7
556,338 - +1.3
556,355 + +1.1
556,356 + -0.3
556,428 - -0.1
556,441 - -2.1
556,441 - -0.3
556,445 + +0.2
556,445 + -0.6
556,469 + -1.2
556,477 - +1.0
556,594 + -0.9
556,599 + +0.3
556,602 - +0.4
556,602 - +0.9
556,704 + +0.7
556,707 - +1.1
556,712 - -0.9
556,755 + PGA1_c05450 0.13 +0.5
556,756 - PGA1_c05450 0.13 +0.8
556,787 + PGA1_c05450 0.15 +1.0
556,804 + PGA1_c05450 0.17 -1.1
556,812 - PGA1_c05450 0.18 +1.0
556,838 + PGA1_c05450 0.20 +0.8
556,846 + PGA1_c05450 0.20 +1.3
556,846 - PGA1_c05450 0.20 +1.2
556,846 - PGA1_c05450 0.20 +0.5
556,846 - PGA1_c05450 0.20 +0.4
556,846 - PGA1_c05450 0.20 +0.4
556,846 - PGA1_c05450 0.20 +0.0
556,860 - PGA1_c05450 0.21 -0.5
556,876 - PGA1_c05450 0.23 +0.9
556,876 - PGA1_c05450 0.23 +1.6
556,881 - PGA1_c05450 0.23 +0.8
556,916 + PGA1_c05450 0.26 +0.7
556,936 - PGA1_c05450 0.28 +1.2
556,956 - PGA1_c05450 0.29 +0.5
557,020 - PGA1_c05450 0.34 +1.7
557,078 - PGA1_c05450 0.39 +0.1
557,132 + PGA1_c05450 0.43 +0.6
557,255 + PGA1_c05450 0.53 -0.4
557,271 - PGA1_c05450 0.55 +1.9
557,285 - PGA1_c05450 0.56 +1.4
557,314 + PGA1_c05450 0.58 +0.8
557,340 - PGA1_c05450 0.60 +0.1
557,378 - PGA1_c05450 0.63 +0.8
557,396 + PGA1_c05450 0.65 +0.8
557,419 - PGA1_c05450 0.67 +1.2
557,457 - PGA1_c05450 0.70 +1.0
557,472 - PGA1_c05450 0.71 -0.5
557,485 + PGA1_c05450 0.72 +0.7
557,485 + PGA1_c05450 0.72 +0.8
557,485 + PGA1_c05450 0.72 +1.2
557,493 - PGA1_c05450 0.73 +1.0
557,493 - PGA1_c05450 0.73 -0.9
557,493 - PGA1_c05450 0.73 +1.6
557,493 - PGA1_c05450 0.73 -0.1
557,510 + PGA1_c05450 0.74 +1.6
557,515 + PGA1_c05450 0.75 +1.4
557,518 - PGA1_c05450 0.75 -1.6
557,518 - PGA1_c05450 0.75 +1.4
557,518 - PGA1_c05450 0.75 +1.6
557,523 - PGA1_c05450 0.75 +1.2
557,552 - PGA1_c05450 0.78 +0.2
557,558 + PGA1_c05450 0.78 +1.4
557,563 - PGA1_c05450 0.78 +0.6
557,597 - PGA1_c05450 0.81 +2.6
557,701 + PGA1_c05450 0.90 -1.1
557,811 - +0.1
557,862 + +1.0
557,877 + +1.3
557,917 + +0.4
557,982 + -0.7
557,988 - +0.5
558,023 + +0.4
558,024 - +1.7
558,044 + +1.7
558,051 + -0.7
558,059 - +0.9
558,071 - +0.1
558,101 - +1.7
558,123 + +1.4
558,257 - PGA1_c05460 0.24 -0.5
558,257 - PGA1_c05460 0.24 +0.9
558,273 - PGA1_c05460 0.25 +1.7
558,320 + PGA1_c05460 0.30 +0.7
558,320 + PGA1_c05460 0.30 +1.0
558,451 - PGA1_c05460 0.44 -0.0
558,520 + PGA1_c05460 0.51 +1.7
558,525 - PGA1_c05460 0.51 +1.1
558,587 + PGA1_c05460 0.58 +0.8
558,587 + PGA1_c05460 0.58 +1.5
558,595 - PGA1_c05460 0.58 +1.7
558,597 + PGA1_c05460 0.59 +0.4
558,597 + PGA1_c05460 0.59 +1.1
558,605 - PGA1_c05460 0.59 +2.7
558,605 - PGA1_c05460 0.59 +0.5
558,641 + PGA1_c05460 0.63 -0.3
558,641 + PGA1_c05460 0.63 +1.5
558,651 + PGA1_c05460 0.64 +0.6
558,654 - PGA1_c05460 0.64 +0.8
558,659 - PGA1_c05460 0.65 -0.4
558,659 - PGA1_c05460 0.65 +1.3
558,674 - PGA1_c05460 0.66 +1.2
558,731 + PGA1_c05460 0.72 -0.8

Or see this region's nucleotide sequence