Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04530 and PGA1_c04540 are separated by 140 nucleotides PGA1_c04540 and PGA1_c04550 are separated by 29 nucleotides
PGA1_c04530: PGA1_c04530 - ureidoglycolate lyase, at 445,434 to 446,282
_c04530
PGA1_c04540: PGA1_c04540 - putative d-galactonate dehydratase, at 446,423 to 447,655
_c04540
PGA1_c04550: PGA1_c04550 - putative formaldehyde dehydrogenase, at 447,685 to 448,776
_c04550
Position (kb) 446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 445.537 kb on + strand, within PGA1_c04530 at 445.542 kb on + strand, within PGA1_c04530 at 445.545 kb on - strand, within PGA1_c04530 at 445.550 kb on - strand, within PGA1_c04530 at 445.550 kb on - strand, within PGA1_c04530 at 445.550 kb on - strand, within PGA1_c04530 at 445.618 kb on + strand, within PGA1_c04530 at 445.662 kb on + strand, within PGA1_c04530 at 445.665 kb on - strand, within PGA1_c04530 at 445.670 kb on - strand, within PGA1_c04530 at 445.804 kb on - strand, within PGA1_c04530 at 445.809 kb on + strand, within PGA1_c04530 at 445.888 kb on - strand, within PGA1_c04530 at 445.890 kb on + strand, within PGA1_c04530 at 445.890 kb on + strand, within PGA1_c04530 at 445.940 kb on + strand, within PGA1_c04530 at 445.947 kb on + strand, within PGA1_c04530 at 445.947 kb on + strand, within PGA1_c04530 at 445.947 kb on + strand, within PGA1_c04530 at 445.947 kb on + strand, within PGA1_c04530 at 445.955 kb on - strand, within PGA1_c04530 at 445.963 kb on + strand, within PGA1_c04530 at 446.072 kb on - strand, within PGA1_c04530 at 446.077 kb on + strand, within PGA1_c04530 at 446.128 kb on + strand, within PGA1_c04530 at 446.140 kb on - strand, within PGA1_c04530 at 446.203 kb on + strand at 446.203 kb on + strand at 446.203 kb on + strand at 446.203 kb on + strand at 446.203 kb on + strand at 446.203 kb on + strand at 446.203 kb on + strand at 446.211 kb on - strand at 446.211 kb on - strand at 446.211 kb on - strand at 446.211 kb on - strand at 446.221 kb on + strand at 446.303 kb on + strand at 446.311 kb on - strand at 446.332 kb on + strand at 446.341 kb on + strand at 446.367 kb on + strand at 446.411 kb on - strand at 446.424 kb on - strand at 446.434 kb on - strand at 446.514 kb on - strand at 446.514 kb on - strand at 446.550 kb on + strand, within PGA1_c04540 at 446.563 kb on + strand, within PGA1_c04540 at 446.563 kb on + strand, within PGA1_c04540 at 446.571 kb on - strand, within PGA1_c04540 at 446.571 kb on - strand, within PGA1_c04540 at 446.581 kb on - strand, within PGA1_c04540 at 446.604 kb on + strand, within PGA1_c04540 at 446.613 kb on + strand, within PGA1_c04540 at 446.657 kb on - strand, within PGA1_c04540 at 446.672 kb on + strand, within PGA1_c04540 at 446.744 kb on + strand, within PGA1_c04540 at 446.794 kb on - strand, within PGA1_c04540 at 446.958 kb on + strand, within PGA1_c04540 at 446.961 kb on - strand, within PGA1_c04540 at 446.961 kb on - strand, within PGA1_c04540 at 447.038 kb on + strand, within PGA1_c04540 at 447.038 kb on + strand, within PGA1_c04540 at 447.043 kb on + strand, within PGA1_c04540 at 447.061 kb on - strand, within PGA1_c04540 at 447.169 kb on + strand, within PGA1_c04540 at 447.171 kb on + strand, within PGA1_c04540 at 447.171 kb on + strand, within PGA1_c04540 at 447.222 kb on + strand, within PGA1_c04540 at 447.222 kb on - strand, within PGA1_c04540 at 447.222 kb on - strand, within PGA1_c04540 at 447.235 kb on + strand, within PGA1_c04540 at 447.269 kb on + strand, within PGA1_c04540 at 447.326 kb on + strand, within PGA1_c04540 at 447.346 kb on + strand, within PGA1_c04540 at 447.394 kb on + strand, within PGA1_c04540 at 447.394 kb on + strand, within PGA1_c04540 at 447.402 kb on - strand, within PGA1_c04540 at 447.402 kb on - strand, within PGA1_c04540 at 447.430 kb on + strand, within PGA1_c04540 at 447.502 kb on - strand, within PGA1_c04540 at 447.502 kb on - strand, within PGA1_c04540 at 447.531 kb on + strand, within PGA1_c04540 at 447.593 kb on + strand at 447.600 kb on + strand at 447.605 kb on + strand at 447.675 kb on + strand at 447.675 kb on + strand at 447.683 kb on + strand at 447.683 kb on - strand at 447.683 kb on - strand at 447.712 kb on - strand at 447.746 kb on + strand at 447.746 kb on + strand at 447.754 kb on - strand at 447.754 kb on - strand at 447.756 kb on + strand at 447.756 kb on + strand at 447.756 kb on + strand at 447.764 kb on - strand at 447.764 kb on - strand at 447.764 kb on - strand at 447.802 kb on + strand, within PGA1_c04550 at 447.810 kb on + strand, within PGA1_c04550 at 447.815 kb on - strand, within PGA1_c04550 at 447.815 kb on - strand, within PGA1_c04550 at 447.817 kb on + strand, within PGA1_c04550 at 447.843 kb on + strand, within PGA1_c04550 at 447.869 kb on - strand, within PGA1_c04550 at 447.871 kb on + strand, within PGA1_c04550 at 447.877 kb on + strand, within PGA1_c04550 at 447.879 kb on - strand, within PGA1_c04550 at 447.880 kb on - strand, within PGA1_c04550 at 447.914 kb on - strand, within PGA1_c04550 at 447.970 kb on - strand, within PGA1_c04550 at 447.994 kb on + strand, within PGA1_c04550 at 447.994 kb on + strand, within PGA1_c04550 at 448.002 kb on - strand, within PGA1_c04550 at 448.025 kb on + strand, within PGA1_c04550 at 448.054 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.092 kb on - strand, within PGA1_c04550 at 448.092 kb on - strand, within PGA1_c04550 at 448.092 kb on - strand, within PGA1_c04550 at 448.092 kb on - strand, within PGA1_c04550 at 448.092 kb on - strand, within PGA1_c04550 at 448.183 kb on + strand, within PGA1_c04550 at 448.219 kb on + strand, within PGA1_c04550 at 448.224 kb on + strand, within PGA1_c04550 at 448.248 kb on + strand, within PGA1_c04550 at 448.256 kb on + strand, within PGA1_c04550 at 448.271 kb on - strand, within PGA1_c04550 at 448.294 kb on - strand, within PGA1_c04550 at 448.297 kb on + strand, within PGA1_c04550 at 448.302 kb on - strand, within PGA1_c04550 at 448.382 kb on + strand, within PGA1_c04550 at 448.412 kb on + strand, within PGA1_c04550 at 448.448 kb on - strand, within PGA1_c04550 at 448.521 kb on + strand, within PGA1_c04550 at 448.531 kb on + strand, within PGA1_c04550 at 448.535 kb on - strand, within PGA1_c04550 at 448.541 kb on + strand, within PGA1_c04550 at 448.546 kb on + strand, within PGA1_c04550 at 448.573 kb on + strand, within PGA1_c04550 at 448.607 kb on + strand, within PGA1_c04550 at 448.632 kb on + strand, within PGA1_c04550 at 448.632 kb on + strand, within PGA1_c04550 at 448.640 kb on - strand, within PGA1_c04550
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 445,537 + PGA1_c04530 0.12 -0.7 445,542 + PGA1_c04530 0.13 +2.3 445,545 - PGA1_c04530 0.13 -0.1 445,550 - PGA1_c04530 0.14 -0.2 445,550 - PGA1_c04530 0.14 -0.6 445,550 - PGA1_c04530 0.14 -0.2 445,618 + PGA1_c04530 0.22 +1.2 445,662 + PGA1_c04530 0.27 +0.5 445,665 - PGA1_c04530 0.27 +0.2 445,670 - PGA1_c04530 0.28 -0.8 445,804 - PGA1_c04530 0.44 +0.9 445,809 + PGA1_c04530 0.44 +1.1 445,888 - PGA1_c04530 0.53 +0.8 445,890 + PGA1_c04530 0.54 -1.5 445,890 + PGA1_c04530 0.54 -0.4 445,940 + PGA1_c04530 0.60 -1.1 445,947 + PGA1_c04530 0.60 +0.2 445,947 + PGA1_c04530 0.60 -0.4 445,947 + PGA1_c04530 0.60 -0.8 445,947 + PGA1_c04530 0.60 -1.1 445,955 - PGA1_c04530 0.61 -0.3 445,963 + PGA1_c04530 0.62 -0.7 446,072 - PGA1_c04530 0.75 -0.1 446,077 + PGA1_c04530 0.76 -1.0 446,128 + PGA1_c04530 0.82 +1.2 446,140 - PGA1_c04530 0.83 -0.7 446,203 + +0.2 446,203 + +0.4 446,203 + -2.4 446,203 + +0.3 446,203 + -0.9 446,203 + +0.9 446,203 + +0.8 446,211 - -0.2 446,211 - +0.4 446,211 - -0.2 446,211 - +0.3 446,221 + +2.0 446,303 + +1.2 446,311 - -2.2 446,332 + -0.8 446,341 + +0.4 446,367 + +1.9 446,411 - -0.4 446,424 - +1.8 446,434 - +0.8 446,514 - -1.7 446,514 - +1.0 446,550 + PGA1_c04540 0.10 -1.8 446,563 + PGA1_c04540 0.11 +0.4 446,563 + PGA1_c04540 0.11 +0.1 446,571 - PGA1_c04540 0.12 +1.0 446,571 - PGA1_c04540 0.12 -1.2 446,581 - PGA1_c04540 0.13 +0.6 446,604 + PGA1_c04540 0.15 +0.8 446,613 + PGA1_c04540 0.15 +0.1 446,657 - PGA1_c04540 0.19 -0.9 446,672 + PGA1_c04540 0.20 -0.8 446,744 + PGA1_c04540 0.26 +0.0 446,794 - PGA1_c04540 0.30 -0.2 446,958 + PGA1_c04540 0.43 +1.2 446,961 - PGA1_c04540 0.44 -0.4 446,961 - PGA1_c04540 0.44 +0.7 447,038 + PGA1_c04540 0.50 +0.7 447,038 + PGA1_c04540 0.50 +0.1 447,043 + PGA1_c04540 0.50 -0.5 447,061 - PGA1_c04540 0.52 +0.3 447,169 + PGA1_c04540 0.61 +1.7 447,171 + PGA1_c04540 0.61 +1.2 447,171 + PGA1_c04540 0.61 -0.9 447,222 + PGA1_c04540 0.65 -0.1 447,222 - PGA1_c04540 0.65 -0.2 447,222 - PGA1_c04540 0.65 +0.4 447,235 + PGA1_c04540 0.66 -0.7 447,269 + PGA1_c04540 0.69 +0.4 447,326 + PGA1_c04540 0.73 +0.3 447,346 + PGA1_c04540 0.75 -2.3 447,394 + PGA1_c04540 0.79 -1.4 447,394 + PGA1_c04540 0.79 -0.5 447,402 - PGA1_c04540 0.79 -1.0 447,402 - PGA1_c04540 0.79 -0.2 447,430 + PGA1_c04540 0.82 -1.1 447,502 - PGA1_c04540 0.88 +0.0 447,502 - PGA1_c04540 0.88 -0.6 447,531 + PGA1_c04540 0.90 -2.3 447,593 + +2.5 447,600 + +0.2 447,605 + -2.0 447,675 + -0.4 447,675 + +1.8 447,683 + -0.1 447,683 - -0.9 447,683 - +1.3 447,712 - +1.0 447,746 + -0.5 447,746 + -0.6 447,754 - +1.2 447,754 - -3.2 447,756 + -0.4 447,756 + +0.6 447,756 + +0.4 447,764 - +0.4 447,764 - -0.0 447,764 - -1.0 447,802 + PGA1_c04550 0.11 -0.4 447,810 + PGA1_c04550 0.11 -2.2 447,815 - PGA1_c04550 0.12 -1.2 447,815 - PGA1_c04550 0.12 +0.8 447,817 + PGA1_c04550 0.12 +0.6 447,843 + PGA1_c04550 0.14 -1.6 447,869 - PGA1_c04550 0.17 -0.8 447,871 + PGA1_c04550 0.17 -0.2 447,877 + PGA1_c04550 0.18 -0.5 447,879 - PGA1_c04550 0.18 -0.6 447,880 - PGA1_c04550 0.18 -0.0 447,914 - PGA1_c04550 0.21 +0.6 447,970 - PGA1_c04550 0.26 +0.8 447,994 + PGA1_c04550 0.28 -0.6 447,994 + PGA1_c04550 0.28 -0.0 448,002 - PGA1_c04550 0.29 -0.1 448,025 + PGA1_c04550 0.31 +0.8 448,054 + PGA1_c04550 0.34 +0.6 448,084 + PGA1_c04550 0.37 -0.1 448,084 + PGA1_c04550 0.37 +0.2 448,084 + PGA1_c04550 0.37 -2.1 448,084 + PGA1_c04550 0.37 -0.7 448,084 + PGA1_c04550 0.37 +1.0 448,084 + PGA1_c04550 0.37 -0.2 448,084 + PGA1_c04550 0.37 +0.5 448,084 + PGA1_c04550 0.37 -0.4 448,084 + PGA1_c04550 0.37 +0.6 448,084 + PGA1_c04550 0.37 -0.2 448,084 + PGA1_c04550 0.37 +0.2 448,084 + PGA1_c04550 0.37 -0.4 448,084 + PGA1_c04550 0.37 -0.5 448,084 + PGA1_c04550 0.37 +0.4 448,092 - PGA1_c04550 0.37 +0.3 448,092 - PGA1_c04550 0.37 -0.8 448,092 - PGA1_c04550 0.37 -0.4 448,092 - PGA1_c04550 0.37 +0.9 448,092 - PGA1_c04550 0.37 +0.2 448,183 + PGA1_c04550 0.46 -1.7 448,219 + PGA1_c04550 0.49 +0.6 448,224 + PGA1_c04550 0.49 -1.2 448,248 + PGA1_c04550 0.52 +0.3 448,256 + PGA1_c04550 0.52 -0.8 448,271 - PGA1_c04550 0.54 +0.1 448,294 - PGA1_c04550 0.56 +0.2 448,297 + PGA1_c04550 0.56 -0.5 448,302 - PGA1_c04550 0.57 +1.5 448,382 + PGA1_c04550 0.64 -1.2 448,412 + PGA1_c04550 0.67 -1.0 448,448 - PGA1_c04550 0.70 -0.7 448,521 + PGA1_c04550 0.77 +1.1 448,531 + PGA1_c04550 0.77 +0.8 448,535 - PGA1_c04550 0.78 +0.2 448,541 + PGA1_c04550 0.78 +0.3 448,546 + PGA1_c04550 0.79 +0.1 448,573 + PGA1_c04550 0.81 +1.4 448,607 + PGA1_c04550 0.84 -0.5 448,632 + PGA1_c04550 0.87 +0.6 448,632 + PGA1_c04550 0.87 -0.3 448,640 - PGA1_c04550 0.87 +0.7
Or see this region's nucleotide sequence