Experiment: Mix of RCH2_defined_noCarbon and Fungal_growth_media_mCAFEs_v1_noCarbon; D-Glucose at 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23560 and BWI76_RS23565 are separated by 35 nucleotides BWI76_RS23565 and BWI76_RS23570 are separated by 73 nucleotides BWI76_RS23570 and BWI76_RS23575 are separated by 10 nucleotides BWI76_RS23575 and BWI76_RS23580 are separated by 12 nucleotides
BWI76_RS23560: BWI76_RS23560 - hypothetical protein, at 4,913,614 to 4,914,153
_RS23560
BWI76_RS23565: BWI76_RS23565 - molecular chaperone FimC, at 4,914,189 to 4,914,914
_RS23565
BWI76_RS23570: BWI76_RS23570 - fimbrial protein, at 4,914,988 to 4,917,624
_RS23570
BWI76_RS23575: BWI76_RS23575 - hypothetical protein, at 4,917,635 to 4,918,165
_RS23575
BWI76_RS23580: BWI76_RS23580 - hypothetical protein, at 4,918,178 to 4,918,678
_RS23580
Position (kb) 4914
4915
4916
4917
4918 Strain fitness (log2 ratio) -1
0
1 at 4914.083 kb on + strand, within BWI76_RS23560 at 4914.292 kb on + strand, within BWI76_RS23565 at 4914.421 kb on + strand, within BWI76_RS23565 at 4914.456 kb on - strand, within BWI76_RS23565 at 4914.712 kb on + strand, within BWI76_RS23565 at 4914.712 kb on + strand, within BWI76_RS23565 at 4914.777 kb on - strand, within BWI76_RS23565 at 4914.795 kb on - strand, within BWI76_RS23565 at 4914.815 kb on - strand, within BWI76_RS23565 at 4914.815 kb on - strand, within BWI76_RS23565 at 4914.825 kb on - strand, within BWI76_RS23565 at 4915.025 kb on - strand at 4915.112 kb on - strand at 4915.125 kb on + strand at 4915.396 kb on + strand, within BWI76_RS23570 at 4916.306 kb on + strand, within BWI76_RS23570 at 4916.316 kb on + strand, within BWI76_RS23570 at 4916.570 kb on + strand, within BWI76_RS23570 at 4916.632 kb on + strand, within BWI76_RS23570 at 4917.120 kb on - strand, within BWI76_RS23570 at 4917.155 kb on - strand, within BWI76_RS23570 at 4917.231 kb on - strand, within BWI76_RS23570 at 4917.280 kb on - strand, within BWI76_RS23570 at 4917.320 kb on - strand, within BWI76_RS23570 at 4917.325 kb on - strand, within BWI76_RS23570 at 4917.325 kb on - strand, within BWI76_RS23570 at 4917.329 kb on + strand, within BWI76_RS23570 at 4917.483 kb on - strand at 4917.508 kb on + strand at 4917.656 kb on + strand at 4917.682 kb on - strand at 4918.012 kb on + strand, within BWI76_RS23575 at 4918.053 kb on + strand, within BWI76_RS23575 at 4918.063 kb on + strand at 4918.088 kb on + strand, within BWI76_RS23575 at 4918.196 kb on - strand at 4918.204 kb on - strand at 4918.346 kb on - strand, within BWI76_RS23580 at 4918.346 kb on - strand, within BWI76_RS23580 at 4918.463 kb on - strand, within BWI76_RS23580 at 4918.492 kb on + strand, within BWI76_RS23580
Per-strain Table
Position Strand Gene LocusTag Fraction Mix of RCH2_defined_noCarbon and Fungal_growth_media_mCAFEs_v1_noCarbon; D-Glucose at 55.5 mM remove 4,914,083 + BWI76_RS23560 0.87 -0.6 4,914,292 + BWI76_RS23565 0.14 -0.9 4,914,421 + BWI76_RS23565 0.32 -0.3 4,914,456 - BWI76_RS23565 0.37 -0.9 4,914,712 + BWI76_RS23565 0.72 +0.9 4,914,712 + BWI76_RS23565 0.72 +0.7 4,914,777 - BWI76_RS23565 0.81 -0.1 4,914,795 - BWI76_RS23565 0.83 -0.2 4,914,815 - BWI76_RS23565 0.86 -0.5 4,914,815 - BWI76_RS23565 0.86 -0.1 4,914,825 - BWI76_RS23565 0.88 -0.1 4,915,025 - -0.1 4,915,112 - -0.3 4,915,125 + -0.2 4,915,396 + BWI76_RS23570 0.15 +0.1 4,916,306 + BWI76_RS23570 0.50 +0.3 4,916,316 + BWI76_RS23570 0.50 +0.4 4,916,570 + BWI76_RS23570 0.60 +1.0 4,916,632 + BWI76_RS23570 0.62 +0.0 4,917,120 - BWI76_RS23570 0.81 +0.3 4,917,155 - BWI76_RS23570 0.82 -0.2 4,917,231 - BWI76_RS23570 0.85 +0.3 4,917,280 - BWI76_RS23570 0.87 +0.1 4,917,320 - BWI76_RS23570 0.88 +1.3 4,917,325 - BWI76_RS23570 0.89 +0.7 4,917,325 - BWI76_RS23570 0.89 +0.2 4,917,329 + BWI76_RS23570 0.89 -0.2 4,917,483 - +0.1 4,917,508 + +0.1 4,917,656 + -1.3 4,917,682 - +0.1 4,918,012 + BWI76_RS23575 0.71 -0.1 4,918,053 + BWI76_RS23575 0.79 -0.3 4,918,063 + -0.3 4,918,088 + BWI76_RS23575 0.85 +0.0 4,918,196 - -0.7 4,918,204 - -1.5 4,918,346 - BWI76_RS23580 0.34 -0.8 4,918,346 - BWI76_RS23580 0.34 -0.2 4,918,463 - BWI76_RS23580 0.57 +0.7 4,918,492 + BWI76_RS23580 0.63 +1.2
Or see this region's nucleotide sequence