Experiment: Mix of RCH2_defined_noCarbon and Fungal_growth_media_mCAFEs_v1_noCarbon; D-Glucose at 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06040 and BWI76_RS06045 are separated by 69 nucleotides BWI76_RS06045 and BWI76_RS06050 overlap by 1 nucleotides
BWI76_RS06040: BWI76_RS06040 - iron ABC transporter permease, at 1,267,910 to 1,269,988
_RS06040
BWI76_RS06045: BWI76_RS06045 - hypothetical protein, at 1,270,058 to 1,271,089
_RS06045
BWI76_RS06050: BWI76_RS06050 - MFS transporter family glucose-6-phosphate receptor UhpC, at 1,271,089 to 1,272,390
_RS06050
Position (kb) 1270
1271
1272 Strain fitness (log2 ratio) -1
0
1 at 1269.059 kb on - strand, within BWI76_RS06040 at 1269.195 kb on - strand, within BWI76_RS06040 at 1269.208 kb on + strand, within BWI76_RS06040 at 1269.235 kb on + strand, within BWI76_RS06040 at 1269.429 kb on + strand, within BWI76_RS06040 at 1269.533 kb on + strand, within BWI76_RS06040 at 1269.748 kb on + strand, within BWI76_RS06040 at 1269.760 kb on + strand, within BWI76_RS06040 at 1269.833 kb on + strand at 1269.841 kb on - strand at 1269.841 kb on - strand at 1269.968 kb on + strand at 1270.009 kb on - strand at 1270.102 kb on - strand at 1270.158 kb on - strand at 1270.158 kb on - strand at 1270.560 kb on + strand, within BWI76_RS06045 at 1270.568 kb on - strand, within BWI76_RS06045 at 1270.625 kb on - strand, within BWI76_RS06045 at 1270.721 kb on - strand, within BWI76_RS06045 at 1270.736 kb on - strand, within BWI76_RS06045 at 1270.892 kb on - strand, within BWI76_RS06045 at 1271.579 kb on + strand, within BWI76_RS06050 at 1271.579 kb on - strand, within BWI76_RS06050 at 1271.608 kb on - strand, within BWI76_RS06050 at 1271.804 kb on + strand, within BWI76_RS06050 at 1271.951 kb on - strand at 1271.990 kb on - strand, within BWI76_RS06050 at 1272.008 kb on + strand, within BWI76_RS06050
Per-strain Table
Position Strand Gene LocusTag Fraction Mix of RCH2_defined_noCarbon and Fungal_growth_media_mCAFEs_v1_noCarbon; D-Glucose at 55.5 mM remove 1,269,059 - BWI76_RS06040 0.55 -1.4 1,269,195 - BWI76_RS06040 0.62 +0.1 1,269,208 + BWI76_RS06040 0.62 -0.0 1,269,235 + BWI76_RS06040 0.64 +0.3 1,269,429 + BWI76_RS06040 0.73 -0.7 1,269,533 + BWI76_RS06040 0.78 -0.1 1,269,748 + BWI76_RS06040 0.88 +0.5 1,269,760 + BWI76_RS06040 0.89 +1.0 1,269,833 + -0.4 1,269,841 - -0.1 1,269,841 - -0.2 1,269,968 + +0.1 1,270,009 - -0.5 1,270,102 - -0.0 1,270,158 - -0.4 1,270,158 - +0.4 1,270,560 + BWI76_RS06045 0.49 +0.5 1,270,568 - BWI76_RS06045 0.49 +0.7 1,270,625 - BWI76_RS06045 0.55 +0.2 1,270,721 - BWI76_RS06045 0.64 +0.7 1,270,736 - BWI76_RS06045 0.66 +0.8 1,270,892 - BWI76_RS06045 0.81 +0.0 1,271,579 + BWI76_RS06050 0.38 -0.2 1,271,579 - BWI76_RS06050 0.38 +0.1 1,271,608 - BWI76_RS06050 0.40 -0.3 1,271,804 + BWI76_RS06050 0.55 +0.2 1,271,951 - -0.3 1,271,990 - BWI76_RS06050 0.69 -1.0 1,272,008 + BWI76_RS06050 0.71 -0.3
Or see this region's nucleotide sequence