Experiment: MoLS4 with L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mtrA and DVU0261 are separated by 19 nucleotides DVU0261 and DVU0262 are separated by 3 nucleotides DVU0262 and tmcA are separated by 21 nucleotides tmcA and tmcB are separated by 25 nucleotides
DVU0260: mtrA - response regulator (TIGR), at 304,088 to 304,489
mtrA
DVU0261: DVU0261 - universal stress protein family (TIGR), at 304,509 to 305,435
DVU0261
DVU0262: DVU0262 - hypothetical protein (TIGR), at 305,439 to 305,993
DVU0262
DVU0263: tmcA - Transmembrane complex, tetraheme cytochrome c3 (Shelley Haveman), at 306,015 to 306,395
tmcA
DVU0264: tmcB - Transmembrane complex, ferredoxin, 2 [4Fe-4S] (Shelley Haveman), at 306,421 to 307,740
tmcB
Position (kb) 305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 304.550 kb on - strand at 304.563 kb on - strand at 304.613 kb on - strand, within DVU0261 at 304.799 kb on + strand, within DVU0261 at 304.821 kb on - strand, within DVU0261 at 304.821 kb on - strand, within DVU0261 at 304.832 kb on + strand, within DVU0261 at 304.856 kb on + strand, within DVU0261 at 304.875 kb on - strand, within DVU0261 at 304.886 kb on + strand, within DVU0261 at 304.901 kb on - strand, within DVU0261 at 304.913 kb on + strand, within DVU0261 at 304.941 kb on + strand, within DVU0261 at 304.952 kb on + strand, within DVU0261 at 304.996 kb on - strand, within DVU0261 at 305.027 kb on - strand, within DVU0261 at 305.031 kb on + strand, within DVU0261 at 305.034 kb on - strand, within DVU0261 at 305.107 kb on - strand, within DVU0261 at 305.107 kb on - strand, within DVU0261 at 305.127 kb on + strand, within DVU0261 at 305.149 kb on + strand, within DVU0261 at 305.179 kb on - strand, within DVU0261 at 305.198 kb on + strand, within DVU0261 at 305.253 kb on + strand, within DVU0261 at 305.284 kb on + strand, within DVU0261 at 305.298 kb on - strand, within DVU0261 at 305.372 kb on - strand at 305.398 kb on + strand at 305.508 kb on + strand, within DVU0262 at 305.562 kb on - strand, within DVU0262 at 305.618 kb on - strand, within DVU0262 at 305.694 kb on - strand, within DVU0262 at 305.700 kb on - strand, within DVU0262 at 305.742 kb on - strand, within DVU0262 at 305.750 kb on - strand, within DVU0262 at 305.751 kb on - strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.797 kb on + strand, within DVU0262 at 305.797 kb on + strand, within DVU0262 at 305.815 kb on - strand, within DVU0262 at 305.859 kb on - strand, within DVU0262 at 305.914 kb on + strand, within DVU0262 at 305.978 kb on + strand at 305.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine (N) remove 304,550 - +0.0 304,563 - -0.1 304,613 - DVU0261 0.11 +0.1 304,799 + DVU0261 0.31 -1.8 304,821 - DVU0261 0.34 -0.2 304,821 - DVU0261 0.34 -0.8 304,832 + DVU0261 0.35 -0.3 304,856 + DVU0261 0.37 +0.1 304,875 - DVU0261 0.39 -0.1 304,886 + DVU0261 0.41 +0.1 304,901 - DVU0261 0.42 +1.0 304,913 + DVU0261 0.44 +0.4 304,941 + DVU0261 0.47 +0.2 304,952 + DVU0261 0.48 +0.2 304,996 - DVU0261 0.53 -0.3 305,027 - DVU0261 0.56 +1.0 305,031 + DVU0261 0.56 -0.7 305,034 - DVU0261 0.57 -0.6 305,107 - DVU0261 0.65 -0.1 305,107 - DVU0261 0.65 -0.3 305,127 + DVU0261 0.67 +0.4 305,149 + DVU0261 0.69 +0.1 305,179 - DVU0261 0.72 +0.3 305,198 + DVU0261 0.74 +0.3 305,253 + DVU0261 0.80 -0.2 305,284 + DVU0261 0.84 -0.0 305,298 - DVU0261 0.85 -0.9 305,372 - -0.1 305,398 + -0.0 305,508 + DVU0262 0.12 +0.2 305,562 - DVU0262 0.22 +0.3 305,618 - DVU0262 0.32 -0.2 305,694 - DVU0262 0.46 +0.1 305,700 - DVU0262 0.47 -0.1 305,742 - DVU0262 0.55 +0.4 305,750 - DVU0262 0.56 +0.8 305,751 - DVU0262 0.56 -0.9 305,775 + DVU0262 0.61 +0.5 305,775 + DVU0262 0.61 -0.3 305,775 + DVU0262 0.61 +0.5 305,775 + DVU0262 0.61 -0.1 305,775 + DVU0262 0.61 -0.5 305,775 + DVU0262 0.61 -0.2 305,775 + DVU0262 0.61 +0.8 305,797 + DVU0262 0.65 -0.6 305,797 + DVU0262 0.65 -0.3 305,815 - DVU0262 0.68 -0.2 305,859 - DVU0262 0.76 -0.5 305,914 + DVU0262 0.86 -0.1 305,978 + -2.9 305,986 - +0.2
Or see this region's nucleotide sequence