Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3289

Experiment: MoLS4 with L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3287 and DVU3289 are separated by 481 nucleotidesDVU3289 and DVU3290 are separated by 16 nucleotides DVU3287: DVU3287 - glycosyl transferase, group 2 family protein (TIGR), at 3,461,929 to 3,463,614 DVU3287 DVU3289: DVU3289 - hypothetical protein (TIGR), at 3,464,096 to 3,464,260 DVU3289 DVU3290: DVU3290 - conserved domain protein (TIGR), at 3,464,277 to 3,465,332 DVU3290 Position (kb) 3464 3465Strain fitness (log2 ratio) -2 -1 0 1at 3463.146 kb on - strand, within DVU3287at 3463.210 kb on + strand, within DVU3287at 3463.251 kb on - strand, within DVU3287at 3463.320 kb on - strand, within DVU3287at 3463.332 kb on + strand, within DVU3287at 3463.340 kb on - strand, within DVU3287at 3463.355 kb on - strand, within DVU3287at 3463.369 kb on + strand, within DVU3287at 3463.391 kb on + strand, within DVU3287at 3463.437 kb on - strand, within DVU3287at 3463.487 kb on - strandat 3463.508 kb on - strandat 3463.526 kb on + strandat 3463.539 kb on - strandat 3463.541 kb on - strandat 3463.551 kb on + strandat 3463.551 kb on + strandat 3463.616 kb on + strandat 3463.705 kb on + strandat 3463.751 kb on - strandat 3463.777 kb on + strandat 3463.785 kb on - strandat 3463.810 kb on - strandat 3463.826 kb on - strandat 3463.834 kb on - strandat 3463.834 kb on - strandat 3463.942 kb on + strandat 3463.965 kb on + strandat 3463.965 kb on + strandat 3464.158 kb on - strand, within DVU3289at 3464.178 kb on + strand, within DVU3289at 3464.205 kb on - strand, within DVU3289at 3464.214 kb on - strand, within DVU3289at 3464.275 kb on - strandat 3464.286 kb on + strandat 3464.294 kb on - strandat 3464.352 kb on - strandat 3464.436 kb on + strand, within DVU3290at 3464.443 kb on + strand, within DVU3290at 3464.444 kb on - strand, within DVU3290at 3464.444 kb on - strand, within DVU3290at 3464.444 kb on - strand, within DVU3290at 3464.451 kb on - strand, within DVU3290at 3464.451 kb on - strand, within DVU3290at 3464.490 kb on + strand, within DVU3290at 3464.497 kb on + strand, within DVU3290at 3464.498 kb on - strand, within DVU3290at 3464.498 kb on - strand, within DVU3290at 3464.500 kb on - strand, within DVU3290at 3464.525 kb on + strand, within DVU3290at 3464.537 kb on + strand, within DVU3290at 3464.537 kb on + strand, within DVU3290at 3464.641 kb on + strand, within DVU3290at 3464.685 kb on - strand, within DVU3290at 3464.907 kb on + strand, within DVU3290at 3464.990 kb on - strand, within DVU3290at 3464.992 kb on + strand, within DVU3290at 3465.009 kb on + strand, within DVU3290at 3465.035 kb on + strand, within DVU3290at 3465.035 kb on + strand, within DVU3290at 3465.035 kb on + strand, within DVU3290at 3465.035 kb on + strand, within DVU3290at 3465.043 kb on - strand, within DVU3290at 3465.043 kb on - strand, within DVU3290at 3465.109 kb on + strand, within DVU3290at 3465.117 kb on + strand, within DVU3290at 3465.135 kb on - strand, within DVU3290at 3465.236 kb on + strandat 3465.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine (N)
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3,463,146 - DVU3287 0.72 -0.5
3,463,210 + DVU3287 0.76 -0.0
3,463,251 - DVU3287 0.78 +0.2
3,463,320 - DVU3287 0.83 -0.4
3,463,332 + DVU3287 0.83 +0.0
3,463,340 - DVU3287 0.84 +0.9
3,463,355 - DVU3287 0.85 -0.1
3,463,369 + DVU3287 0.85 -1.7
3,463,391 + DVU3287 0.87 -1.0
3,463,437 - DVU3287 0.89 -0.7
3,463,487 - -0.4
3,463,508 - -0.1
3,463,526 + -0.1
3,463,539 - +0.3
3,463,541 - -0.8
3,463,551 + -0.7
3,463,551 + -0.4
3,463,616 + +0.1
3,463,705 + -0.2
3,463,751 - +0.5
3,463,777 + +0.2
3,463,785 - -0.1
3,463,810 - -0.2
3,463,826 - -0.0
3,463,834 - -0.3
3,463,834 - -2.7
3,463,942 + +0.3
3,463,965 + -0.3
3,463,965 + -0.9
3,464,158 - DVU3289 0.38 +0.9
3,464,178 + DVU3289 0.50 +0.9
3,464,205 - DVU3289 0.66 +0.8
3,464,214 - DVU3289 0.72 +0.0
3,464,275 - +0.9
3,464,286 + +0.6
3,464,294 - +1.2
3,464,352 - +1.2
3,464,436 + DVU3290 0.15 +0.8
3,464,443 + DVU3290 0.16 +1.5
3,464,444 - DVU3290 0.16 +1.0
3,464,444 - DVU3290 0.16 +0.9
3,464,444 - DVU3290 0.16 +0.9
3,464,451 - DVU3290 0.16 +0.6
3,464,451 - DVU3290 0.16 +1.0
3,464,490 + DVU3290 0.20 +1.2
3,464,497 + DVU3290 0.21 +0.6
3,464,498 - DVU3290 0.21 +0.9
3,464,498 - DVU3290 0.21 +1.7
3,464,500 - DVU3290 0.21 +0.2
3,464,525 + DVU3290 0.23 +0.9
3,464,537 + DVU3290 0.25 +1.4
3,464,537 + DVU3290 0.25 +1.4
3,464,641 + DVU3290 0.34 +0.6
3,464,685 - DVU3290 0.39 +0.9
3,464,907 + DVU3290 0.60 +0.1
3,464,990 - DVU3290 0.68 +0.8
3,464,992 + DVU3290 0.68 +1.6
3,465,009 + DVU3290 0.69 -0.6
3,465,035 + DVU3290 0.72 -0.6
3,465,035 + DVU3290 0.72 +0.6
3,465,035 + DVU3290 0.72 +0.6
3,465,035 + DVU3290 0.72 +0.7
3,465,043 - DVU3290 0.73 +1.3
3,465,043 - DVU3290 0.73 +0.7
3,465,109 + DVU3290 0.79 +0.8
3,465,117 + DVU3290 0.80 +0.7
3,465,135 - DVU3290 0.81 +0.9
3,465,236 + -0.0
3,465,244 - -0.3

Or see this region's nucleotide sequence