Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1950

Experiment: MoLS4 with L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnifA-1 and DVU1950 are separated by 3 nucleotidesDVU1950 and DVU1951 overlap by 1 nucleotides DVU1949: nifA-1 - nif-specific regulatory protein (TIGR), at 2,021,083 to 2,022,672 nifA-1 DVU1950: DVU1950 - indolepyruvate ferredoxin oxidoreductase, beta subunit, putative (TIGR), at 2,022,676 to 2,023,272 DVU1950 DVU1951: DVU1951 - indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative (TIGR), at 2,023,272 to 2,025,122 DVU1951 Position (kb) 2022 2023 2024Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2021.689 kb on - strand, within nifA-1at 2021.843 kb on + strand, within nifA-1at 2021.937 kb on - strand, within nifA-1at 2021.938 kb on - strand, within nifA-1at 2021.995 kb on - strand, within nifA-1at 2022.588 kb on - strandat 2022.861 kb on + strand, within DVU1950at 2022.885 kb on + strand, within DVU1950at 2022.988 kb on - strand, within DVU1950at 2022.991 kb on + strand, within DVU1950at 2022.999 kb on - strand, within DVU1950at 2022.999 kb on - strand, within DVU1950at 2023.045 kb on - strand, within DVU1950at 2023.047 kb on + strand, within DVU1950at 2023.204 kb on - strand, within DVU1950at 2023.209 kb on - strand, within DVU1950at 2023.214 kb on + strandat 2023.231 kb on - strandat 2023.242 kb on + strandat 2023.267 kb on + strandat 2023.415 kb on + strandat 2023.417 kb on + strandat 2023.460 kb on + strand, within DVU1951at 2023.527 kb on - strand, within DVU1951at 2023.531 kb on + strand, within DVU1951at 2023.680 kb on - strand, within DVU1951at 2023.807 kb on + strand, within DVU1951at 2023.815 kb on - strand, within DVU1951at 2023.895 kb on - strand, within DVU1951at 2023.936 kb on - strand, within DVU1951at 2023.977 kb on - strand, within DVU1951

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine (N)
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2,021,689 - nifA-1 DVU1949 0.38 -4.0
2,021,843 + nifA-1 DVU1949 0.48 -4.9
2,021,937 - nifA-1 DVU1949 0.54 -2.0
2,021,938 - nifA-1 DVU1949 0.54 -0.9
2,021,995 - nifA-1 DVU1949 0.57 -1.6
2,022,588 - -2.0
2,022,861 + DVU1950 0.31 -3.8
2,022,885 + DVU1950 0.35 -0.0
2,022,988 - DVU1950 0.52 -1.4
2,022,991 + DVU1950 0.53 -4.0
2,022,999 - DVU1950 0.54 -2.3
2,022,999 - DVU1950 0.54 -2.2
2,023,045 - DVU1950 0.62 -1.3
2,023,047 + DVU1950 0.62 -2.4
2,023,204 - DVU1950 0.88 -1.9
2,023,209 - DVU1950 0.89 -2.1
2,023,214 + -4.7
2,023,231 - -1.5
2,023,242 + -2.2
2,023,267 + -2.7
2,023,415 + -3.3
2,023,417 + -0.4
2,023,460 + DVU1951 0.10 -2.9
2,023,527 - DVU1951 0.14 -2.2
2,023,531 + DVU1951 0.14 -3.6
2,023,680 - DVU1951 0.22 +0.1
2,023,807 + DVU1951 0.29 -3.1
2,023,815 - DVU1951 0.29 -2.6
2,023,895 - DVU1951 0.34 -2.7
2,023,936 - DVU1951 0.36 -4.5
2,023,977 - DVU1951 0.38 -3.5

Or see this region's nucleotide sequence