Experiment: BG11 with Chlorite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0952 and Synpcc7942_0953 are separated by 123 nucleotides Synpcc7942_0953 and Synpcc7942_0954 are separated by 57 nucleotides Synpcc7942_0954 and Synpcc7942_0955 overlap by 29 nucleotides Synpcc7942_0955 and Synpcc7942_0956 are separated by 135 nucleotides
Synpcc7942_0952: Synpcc7942_0952 - hypothetical protein, at 960,829 to 961,620
_0952
Synpcc7942_0953: Synpcc7942_0953 - hypothetical protein, at 961,744 to 962,208
_0953
Synpcc7942_0954: Synpcc7942_0954 - glycine cleavage T-protein-like, at 962,266 to 963,300
_0954
Synpcc7942_0955: Synpcc7942_0955 - hypothetical protein, at 963,272 to 963,790
_0955
Synpcc7942_0956: Synpcc7942_0956 - hypothetical protein, at 963,926 to 965,068
_0956
Position (kb) 962
963
964 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 961.333 kb on + strand, within Synpcc7942_0952 at 961.349 kb on - strand, within Synpcc7942_0952 at 961.367 kb on + strand, within Synpcc7942_0952 at 961.375 kb on - strand, within Synpcc7942_0952 at 961.415 kb on - strand, within Synpcc7942_0952 at 961.447 kb on + strand, within Synpcc7942_0952 at 961.452 kb on + strand, within Synpcc7942_0952 at 961.474 kb on - strand, within Synpcc7942_0952 at 961.484 kb on - strand, within Synpcc7942_0952 at 961.488 kb on + strand at 961.511 kb on - strand, within Synpcc7942_0952 at 961.537 kb on - strand, within Synpcc7942_0952 at 961.564 kb on + strand at 961.564 kb on + strand at 961.564 kb on + strand at 961.566 kb on - strand at 961.567 kb on - strand at 961.572 kb on - strand at 961.572 kb on - strand at 961.574 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.601 kb on + strand at 961.715 kb on - strand at 961.789 kb on + strand at 961.801 kb on - strand at 961.816 kb on - strand, within Synpcc7942_0953 at 961.843 kb on - strand, within Synpcc7942_0953 at 961.887 kb on - strand, within Synpcc7942_0953 at 961.951 kb on - strand, within Synpcc7942_0953 at 961.976 kb on + strand, within Synpcc7942_0953 at 961.986 kb on + strand, within Synpcc7942_0953 at 962.000 kb on - strand, within Synpcc7942_0953 at 962.001 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.090 kb on - strand, within Synpcc7942_0953 at 962.092 kb on - strand, within Synpcc7942_0953 at 962.146 kb on - strand, within Synpcc7942_0953 at 962.175 kb on - strand at 962.189 kb on - strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.205 kb on - strand at 962.212 kb on - strand at 962.212 kb on - strand at 962.216 kb on + strand at 962.236 kb on + strand at 962.242 kb on + strand at 962.242 kb on - strand at 962.242 kb on - strand at 962.249 kb on - strand at 962.285 kb on - strand at 962.316 kb on - strand at 962.319 kb on - strand at 962.353 kb on + strand at 962.353 kb on + strand at 962.361 kb on - strand at 962.386 kb on - strand, within Synpcc7942_0954 at 962.386 kb on - strand, within Synpcc7942_0954 at 962.434 kb on + strand, within Synpcc7942_0954 at 962.434 kb on + strand, within Synpcc7942_0954 at 962.442 kb on - strand, within Synpcc7942_0954 at 962.442 kb on - strand, within Synpcc7942_0954 at 962.468 kb on - strand, within Synpcc7942_0954 at 962.500 kb on - strand, within Synpcc7942_0954 at 962.503 kb on + strand, within Synpcc7942_0954 at 962.510 kb on + strand, within Synpcc7942_0954 at 962.510 kb on + strand, within Synpcc7942_0954 at 962.524 kb on + strand, within Synpcc7942_0954 at 962.531 kb on - strand, within Synpcc7942_0954 at 962.539 kb on - strand, within Synpcc7942_0954 at 962.548 kb on - strand, within Synpcc7942_0954 at 962.548 kb on - strand, within Synpcc7942_0954 at 962.572 kb on + strand, within Synpcc7942_0954 at 962.590 kb on + strand, within Synpcc7942_0954 at 962.598 kb on - strand, within Synpcc7942_0954 at 962.599 kb on - strand, within Synpcc7942_0954 at 962.624 kb on + strand, within Synpcc7942_0954 at 962.631 kb on - strand, within Synpcc7942_0954 at 962.656 kb on + strand, within Synpcc7942_0954 at 962.670 kb on - strand, within Synpcc7942_0954 at 962.689 kb on - strand, within Synpcc7942_0954 at 962.699 kb on - strand, within Synpcc7942_0954 at 962.741 kb on + strand, within Synpcc7942_0954 at 962.741 kb on + strand, within Synpcc7942_0954 at 962.749 kb on - strand, within Synpcc7942_0954 at 962.749 kb on - strand, within Synpcc7942_0954 at 962.749 kb on - strand, within Synpcc7942_0954 at 962.755 kb on - strand, within Synpcc7942_0954 at 962.759 kb on + strand, within Synpcc7942_0954 at 962.766 kb on + strand, within Synpcc7942_0954 at 962.792 kb on + strand, within Synpcc7942_0954 at 962.793 kb on - strand, within Synpcc7942_0954 at 962.798 kb on - strand, within Synpcc7942_0954 at 962.799 kb on + strand, within Synpcc7942_0954 at 962.799 kb on + strand, within Synpcc7942_0954 at 962.807 kb on - strand, within Synpcc7942_0954 at 962.814 kb on - strand, within Synpcc7942_0954 at 962.825 kb on + strand, within Synpcc7942_0954 at 962.864 kb on + strand, within Synpcc7942_0954 at 962.928 kb on + strand, within Synpcc7942_0954 at 962.928 kb on + strand, within Synpcc7942_0954 at 962.928 kb on - strand, within Synpcc7942_0954 at 962.928 kb on - strand, within Synpcc7942_0954 at 962.964 kb on + strand, within Synpcc7942_0954 at 962.969 kb on + strand, within Synpcc7942_0954 at 963.006 kb on - strand, within Synpcc7942_0954 at 963.028 kb on - strand, within Synpcc7942_0954 at 963.031 kb on + strand, within Synpcc7942_0954 at 963.041 kb on - strand, within Synpcc7942_0954 at 963.041 kb on - strand, within Synpcc7942_0954 at 963.049 kb on - strand, within Synpcc7942_0954 at 963.049 kb on - strand, within Synpcc7942_0954 at 963.094 kb on + strand, within Synpcc7942_0954 at 963.097 kb on - strand, within Synpcc7942_0954 at 963.112 kb on + strand, within Synpcc7942_0954 at 963.147 kb on - strand, within Synpcc7942_0954 at 963.154 kb on - strand, within Synpcc7942_0954 at 963.157 kb on - strand, within Synpcc7942_0954 at 963.159 kb on + strand, within Synpcc7942_0954 at 963.192 kb on + strand, within Synpcc7942_0954 at 963.200 kb on + strand at 963.208 kb on - strand at 963.220 kb on - strand at 963.249 kb on + strand at 963.249 kb on + strand at 963.250 kb on - strand at 963.257 kb on - strand at 963.262 kb on - strand at 963.314 kb on - strand at 963.331 kb on - strand, within Synpcc7942_0955 at 963.379 kb on + strand, within Synpcc7942_0955 at 963.397 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand at 963.449 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand, within Synpcc7942_0955 at 963.454 kb on - strand, within Synpcc7942_0955 at 963.480 kb on - strand, within Synpcc7942_0955 at 963.494 kb on + strand, within Synpcc7942_0955 at 963.497 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.502 kb on - strand, within Synpcc7942_0955 at 963.506 kb on - strand, within Synpcc7942_0955 at 963.507 kb on - strand, within Synpcc7942_0955 at 963.507 kb on - strand, within Synpcc7942_0955 at 963.508 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.523 kb on + strand at 963.523 kb on + strand, within Synpcc7942_0955 at 963.554 kb on + strand, within Synpcc7942_0955 at 963.598 kb on + strand, within Synpcc7942_0955 at 963.599 kb on + strand, within Synpcc7942_0955 at 963.599 kb on + strand, within Synpcc7942_0955 at 963.606 kb on - strand, within Synpcc7942_0955 at 963.640 kb on + strand, within Synpcc7942_0955 at 963.647 kb on + strand, within Synpcc7942_0955 at 963.648 kb on - strand, within Synpcc7942_0955 at 963.674 kb on - strand, within Synpcc7942_0955 at 963.676 kb on + strand, within Synpcc7942_0955 at 963.769 kb on - strand at 963.801 kb on - strand at 963.801 kb on - strand at 963.823 kb on + strand at 963.824 kb on - strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.864 kb on + strand at 963.865 kb on + strand at 963.866 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.878 kb on + strand at 963.878 kb on + strand at 963.886 kb on - strand at 963.886 kb on - strand at 963.886 kb on - strand at 963.887 kb on - strand at 963.897 kb on - strand at 964.014 kb on + strand at 964.023 kb on - strand at 964.043 kb on - strand, within Synpcc7942_0956 at 964.043 kb on - strand, within Synpcc7942_0956 at 964.068 kb on - strand, within Synpcc7942_0956 at 964.068 kb on - strand, within Synpcc7942_0956 at 964.138 kb on - strand, within Synpcc7942_0956 at 964.150 kb on - strand, within Synpcc7942_0956 at 964.158 kb on - strand, within Synpcc7942_0956 at 964.172 kb on + strand, within Synpcc7942_0956 at 964.256 kb on + strand, within Synpcc7942_0956 at 964.280 kb on + strand, within Synpcc7942_0956
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chlorite 2.5 mM remove 961,333 + Synpcc7942_0952 0.64 +0.7 961,349 - Synpcc7942_0952 0.66 +1.8 961,367 + Synpcc7942_0952 0.68 -0.5 961,375 - Synpcc7942_0952 0.69 +1.3 961,415 - Synpcc7942_0952 0.74 +0.0 961,447 + Synpcc7942_0952 0.78 +0.7 961,452 + Synpcc7942_0952 0.79 -0.3 961,474 - Synpcc7942_0952 0.81 +0.7 961,484 - Synpcc7942_0952 0.83 -1.0 961,488 + +1.4 961,511 - Synpcc7942_0952 0.86 -1.9 961,537 - Synpcc7942_0952 0.89 -3.0 961,564 + -1.3 961,564 + +0.1 961,564 + -0.0 961,566 - -1.0 961,567 - -1.4 961,572 - +0.3 961,572 - +0.2 961,574 - +0.1 961,594 - -0.6 961,594 - -1.1 961,594 - -1.0 961,601 + +0.8 961,715 - -1.2 961,789 + -3.4 961,801 - +3.6 961,816 - Synpcc7942_0953 0.15 -0.4 961,843 - Synpcc7942_0953 0.21 +0.3 961,887 - Synpcc7942_0953 0.31 +1.6 961,951 - Synpcc7942_0953 0.45 +1.6 961,976 + Synpcc7942_0953 0.50 -0.8 961,986 + Synpcc7942_0953 0.52 +0.8 962,000 - Synpcc7942_0953 0.55 -0.8 962,001 + Synpcc7942_0953 0.55 +1.4 962,048 + Synpcc7942_0953 0.65 -1.5 962,048 + Synpcc7942_0953 0.65 -1.4 962,048 + Synpcc7942_0953 0.65 +0.5 962,056 - Synpcc7942_0953 0.67 +0.4 962,056 - Synpcc7942_0953 0.67 -0.8 962,056 - Synpcc7942_0953 0.67 +1.1 962,056 - Synpcc7942_0953 0.67 -0.5 962,056 - Synpcc7942_0953 0.67 +1.1 962,056 - Synpcc7942_0953 0.67 -2.6 962,090 - Synpcc7942_0953 0.74 -1.5 962,092 - Synpcc7942_0953 0.75 +0.5 962,146 - Synpcc7942_0953 0.86 -1.2 962,175 - -0.6 962,189 - -0.1 962,204 + -0.3 962,204 + +1.5 962,204 + -1.6 962,204 + -0.1 962,205 - +0.7 962,212 - +0.3 962,212 - +2.2 962,216 + -2.3 962,236 + -0.0 962,242 + -0.0 962,242 - -0.3 962,242 - -1.7 962,249 - -0.0 962,285 - -0.0 962,316 - -1.7 962,319 - +1.2 962,353 + -2.4 962,353 + +0.7 962,361 - +0.2 962,386 - Synpcc7942_0954 0.12 +0.8 962,386 - Synpcc7942_0954 0.12 +0.3 962,434 + Synpcc7942_0954 0.16 -0.1 962,434 + Synpcc7942_0954 0.16 +1.1 962,442 - Synpcc7942_0954 0.17 +0.8 962,442 - Synpcc7942_0954 0.17 +0.2 962,468 - Synpcc7942_0954 0.20 -0.8 962,500 - Synpcc7942_0954 0.23 -0.7 962,503 + Synpcc7942_0954 0.23 -1.7 962,510 + Synpcc7942_0954 0.24 +0.1 962,510 + Synpcc7942_0954 0.24 -0.3 962,524 + Synpcc7942_0954 0.25 -0.3 962,531 - Synpcc7942_0954 0.26 -2.4 962,539 - Synpcc7942_0954 0.26 -1.0 962,548 - Synpcc7942_0954 0.27 -0.2 962,548 - Synpcc7942_0954 0.27 +0.2 962,572 + Synpcc7942_0954 0.30 +0.3 962,590 + Synpcc7942_0954 0.31 +0.0 962,598 - Synpcc7942_0954 0.32 -1.4 962,599 - Synpcc7942_0954 0.32 +0.6 962,624 + Synpcc7942_0954 0.35 -0.8 962,631 - Synpcc7942_0954 0.35 -2.3 962,656 + Synpcc7942_0954 0.38 +0.4 962,670 - Synpcc7942_0954 0.39 -0.7 962,689 - Synpcc7942_0954 0.41 -2.0 962,699 - Synpcc7942_0954 0.42 +1.1 962,741 + Synpcc7942_0954 0.46 -0.0 962,741 + Synpcc7942_0954 0.46 -0.4 962,749 - Synpcc7942_0954 0.47 +0.1 962,749 - Synpcc7942_0954 0.47 +1.5 962,749 - Synpcc7942_0954 0.47 -0.2 962,755 - Synpcc7942_0954 0.47 -0.4 962,759 + Synpcc7942_0954 0.48 -1.1 962,766 + Synpcc7942_0954 0.48 -0.0 962,792 + Synpcc7942_0954 0.51 +2.5 962,793 - Synpcc7942_0954 0.51 -0.8 962,798 - Synpcc7942_0954 0.51 +0.7 962,799 + Synpcc7942_0954 0.51 -1.9 962,799 + Synpcc7942_0954 0.51 -1.4 962,807 - Synpcc7942_0954 0.52 -1.2 962,814 - Synpcc7942_0954 0.53 +0.3 962,825 + Synpcc7942_0954 0.54 -0.1 962,864 + Synpcc7942_0954 0.58 -0.8 962,928 + Synpcc7942_0954 0.64 +0.7 962,928 + Synpcc7942_0954 0.64 +0.1 962,928 - Synpcc7942_0954 0.64 +0.6 962,928 - Synpcc7942_0954 0.64 +0.6 962,964 + Synpcc7942_0954 0.67 +0.8 962,969 + Synpcc7942_0954 0.68 +0.7 963,006 - Synpcc7942_0954 0.71 +0.1 963,028 - Synpcc7942_0954 0.74 -0.8 963,031 + Synpcc7942_0954 0.74 -1.8 963,041 - Synpcc7942_0954 0.75 +1.5 963,041 - Synpcc7942_0954 0.75 -0.0 963,049 - Synpcc7942_0954 0.76 +0.4 963,049 - Synpcc7942_0954 0.76 +1.8 963,094 + Synpcc7942_0954 0.80 +0.2 963,097 - Synpcc7942_0954 0.80 +0.4 963,112 + Synpcc7942_0954 0.82 +0.4 963,147 - Synpcc7942_0954 0.85 -0.4 963,154 - Synpcc7942_0954 0.86 -0.7 963,157 - Synpcc7942_0954 0.86 -0.4 963,159 + Synpcc7942_0954 0.86 +0.8 963,192 + Synpcc7942_0954 0.89 -1.7 963,200 + +1.4 963,208 - -0.8 963,220 - +1.4 963,249 + +2.4 963,249 + -0.8 963,250 - +0.6 963,257 - +0.5 963,262 - +1.5 963,314 - -1.5 963,331 - Synpcc7942_0955 0.11 -0.4 963,379 + Synpcc7942_0955 0.21 -1.1 963,397 - Synpcc7942_0955 0.24 -0.2 963,449 - Synpcc7942_0955 0.34 -1.2 963,449 - +0.7 963,449 - Synpcc7942_0955 0.34 -2.6 963,449 - Synpcc7942_0955 0.34 -2.5 963,454 - Synpcc7942_0955 0.35 +2.6 963,480 - Synpcc7942_0955 0.40 -2.8 963,494 + Synpcc7942_0955 0.43 +0.6 963,497 + Synpcc7942_0955 0.43 -1.1 963,499 + Synpcc7942_0955 0.44 -3.6 963,499 + Synpcc7942_0955 0.44 -2.0 963,499 + Synpcc7942_0955 0.44 +1.6 963,502 - Synpcc7942_0955 0.44 -0.6 963,506 - Synpcc7942_0955 0.45 -0.5 963,507 - Synpcc7942_0955 0.45 +0.3 963,507 - Synpcc7942_0955 0.45 -0.6 963,508 + Synpcc7942_0955 0.45 -1.0 963,513 + Synpcc7942_0955 0.46 -0.9 963,513 + Synpcc7942_0955 0.46 -0.4 963,513 + Synpcc7942_0955 0.46 -0.2 963,521 - Synpcc7942_0955 0.48 +1.4 963,521 - Synpcc7942_0955 0.48 -1.5 963,521 - Synpcc7942_0955 0.48 -0.4 963,521 - Synpcc7942_0955 0.48 +0.6 963,521 - Synpcc7942_0955 0.48 -2.3 963,521 - Synpcc7942_0955 0.48 -1.8 963,521 - Synpcc7942_0955 0.48 +0.4 963,521 - Synpcc7942_0955 0.48 -0.4 963,521 - Synpcc7942_0955 0.48 +0.4 963,523 + -0.6 963,523 + Synpcc7942_0955 0.48 -0.3 963,554 + Synpcc7942_0955 0.54 -1.6 963,598 + Synpcc7942_0955 0.63 -1.3 963,599 + Synpcc7942_0955 0.63 -1.2 963,599 + Synpcc7942_0955 0.63 -2.0 963,606 - Synpcc7942_0955 0.64 +0.8 963,640 + Synpcc7942_0955 0.71 -1.0 963,647 + Synpcc7942_0955 0.72 -1.6 963,648 - Synpcc7942_0955 0.72 +0.7 963,674 - Synpcc7942_0955 0.77 -0.9 963,676 + Synpcc7942_0955 0.78 -0.5 963,769 - -4.5 963,801 - -0.5 963,801 - -0.6 963,823 + -0.9 963,824 - -1.0 963,863 + -0.7 963,863 + +0.3 963,863 + +0.8 963,863 + +0.1 963,863 + -1.6 963,864 + -3.6 963,865 + -0.3 963,866 - +0.1 963,871 - -0.2 963,871 - -1.0 963,871 - -2.3 963,871 - -0.5 963,871 - -1.4 963,871 - -0.5 963,871 - -2.4 963,878 + +2.6 963,878 + -0.6 963,886 - +0.1 963,886 - -1.0 963,886 - -0.4 963,887 - -0.5 963,897 - -1.4 964,014 + -2.2 964,023 - -1.5 964,043 - Synpcc7942_0956 0.10 -1.4 964,043 - Synpcc7942_0956 0.10 -4.9 964,068 - Synpcc7942_0956 0.12 -1.0 964,068 - Synpcc7942_0956 0.12 -1.4 964,138 - Synpcc7942_0956 0.19 -3.0 964,150 - Synpcc7942_0956 0.20 -1.0 964,158 - Synpcc7942_0956 0.20 -1.0 964,172 + Synpcc7942_0956 0.22 +0.2 964,256 + Synpcc7942_0956 0.29 -1.5 964,280 + Synpcc7942_0956 0.31 -4.4
Or see this region's nucleotide sequence