Experiment: BG11 with Chlorite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaX and Synpcc7942_0913 are separated by 2 nucleotides Synpcc7942_0913 and Synpcc7942_0914 overlap by 1 nucleotides Synpcc7942_0914 and aroQ overlap by 4 nucleotides aroQ and Synpcc7942_0916 are separated by 10 nucleotides Synpcc7942_0916 and tRNA-Tyr are separated by 174 nucleotides tRNA-Tyr and tRNA-Thr are separated by 7 nucleotides
Synpcc7942_0912: dnaX - DNA polymerase III, tau subunit, at 919,325 to 921,283
dnaX
Synpcc7942_0913: Synpcc7942_0913 - N-acetyltransferase-like, at 921,286 to 921,780
_0913
Synpcc7942_0914: Synpcc7942_0914 - tRNA-(MS(2)IO(6)A)-hydroxylase-like, at 921,780 to 922,391
_0914
Synpcc7942_0915: aroQ - 3-dehydroquinate dehydratase, at 922,388 to 922,837
aroQ
Synpcc7942_0916: Synpcc7942_0916 - hypothetical protein, at 922,848 to 922,976
_0916
Synpcc7942_R0042: tRNA-Tyr - tRNA-Tyr, at 923,151 to 923,235
tRNA-Tyr
Synpcc7942_R0043: tRNA-Thr - tRNA-Thr, at 923,243 to 923,317
tRNA-Thr
Position (kb) 921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 921.230 kb on - strand at 921.285 kb on + strand at 921.328 kb on - strand at 921.329 kb on + strand at 921.337 kb on - strand, within Synpcc7942_0913 at 921.384 kb on - strand, within Synpcc7942_0913 at 921.391 kb on - strand, within Synpcc7942_0913 at 921.391 kb on - strand, within Synpcc7942_0913 at 921.460 kb on - strand, within Synpcc7942_0913 at 921.466 kb on - strand, within Synpcc7942_0913 at 921.468 kb on + strand, within Synpcc7942_0913 at 921.474 kb on + strand, within Synpcc7942_0913 at 921.489 kb on + strand, within Synpcc7942_0913 at 921.522 kb on - strand, within Synpcc7942_0913 at 921.544 kb on - strand, within Synpcc7942_0913 at 921.557 kb on - strand, within Synpcc7942_0913 at 921.583 kb on - strand, within Synpcc7942_0913 at 921.640 kb on - strand, within Synpcc7942_0913 at 921.670 kb on + strand, within Synpcc7942_0913 at 921.676 kb on + strand, within Synpcc7942_0913 at 921.691 kb on + strand, within Synpcc7942_0913 at 921.716 kb on - strand, within Synpcc7942_0913 at 921.735 kb on + strand at 921.747 kb on + strand at 921.755 kb on - strand at 921.784 kb on - strand at 921.784 kb on - strand at 921.786 kb on + strand at 921.786 kb on + strand at 921.786 kb on - strand at 921.794 kb on - strand at 921.794 kb on - strand at 921.795 kb on + strand at 921.819 kb on - strand at 921.821 kb on - strand at 921.861 kb on - strand, within Synpcc7942_0914 at 921.861 kb on - strand, within Synpcc7942_0914 at 921.920 kb on + strand, within Synpcc7942_0914 at 921.928 kb on - strand, within Synpcc7942_0914 at 921.930 kb on - strand, within Synpcc7942_0914 at 921.938 kb on - strand, within Synpcc7942_0914 at 921.988 kb on + strand, within Synpcc7942_0914 at 922.000 kb on + strand, within Synpcc7942_0914 at 922.003 kb on - strand, within Synpcc7942_0914 at 922.003 kb on - strand, within Synpcc7942_0914 at 922.054 kb on + strand, within Synpcc7942_0914 at 922.067 kb on + strand, within Synpcc7942_0914 at 922.072 kb on + strand, within Synpcc7942_0914 at 922.072 kb on + strand, within Synpcc7942_0914 at 922.072 kb on + strand, within Synpcc7942_0914 at 922.075 kb on - strand, within Synpcc7942_0914 at 922.077 kb on + strand, within Synpcc7942_0914 at 922.080 kb on - strand, within Synpcc7942_0914 at 922.082 kb on + strand, within Synpcc7942_0914 at 922.095 kb on + strand, within Synpcc7942_0914 at 922.099 kb on + strand, within Synpcc7942_0914 at 922.103 kb on - strand, within Synpcc7942_0914 at 922.132 kb on + strand, within Synpcc7942_0914 at 922.133 kb on - strand, within Synpcc7942_0914 at 922.133 kb on - strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.152 kb on - strand, within Synpcc7942_0914 at 922.152 kb on - strand, within Synpcc7942_0914 at 922.154 kb on + strand, within Synpcc7942_0914 at 922.162 kb on - strand, within Synpcc7942_0914 at 922.172 kb on + strand, within Synpcc7942_0914 at 922.172 kb on - strand, within Synpcc7942_0914 at 922.180 kb on - strand, within Synpcc7942_0914 at 922.180 kb on - strand, within Synpcc7942_0914 at 922.183 kb on + strand, within Synpcc7942_0914 at 922.186 kb on - strand, within Synpcc7942_0914 at 922.191 kb on - strand, within Synpcc7942_0914 at 922.205 kb on + strand, within Synpcc7942_0914 at 922.213 kb on - strand, within Synpcc7942_0914 at 922.243 kb on - strand, within Synpcc7942_0914 at 922.249 kb on - strand, within Synpcc7942_0914 at 922.271 kb on + strand, within Synpcc7942_0914 at 922.275 kb on - strand, within Synpcc7942_0914 at 922.325 kb on + strand, within Synpcc7942_0914 at 922.333 kb on - strand at 922.338 kb on - strand at 922.370 kb on - strand at 922.379 kb on - strand at 922.379 kb on - strand at 922.387 kb on + strand at 922.846 kb on + strand at 922.867 kb on + strand, within Synpcc7942_0916 at 922.880 kb on + strand, within Synpcc7942_0916 at 922.903 kb on + strand, within Synpcc7942_0916 at 922.989 kb on + strand at 923.051 kb on + strand at 923.059 kb on - strand at 923.059 kb on - strand at 923.061 kb on + strand at 923.062 kb on + strand at 923.072 kb on + strand at 923.348 kb on + strand at 923.348 kb on + strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.368 kb on + strand at 923.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chlorite 2.5 mM remove 921,230 - +0.5 921,285 + -0.0 921,328 - -1.2 921,329 + -0.3 921,337 - Synpcc7942_0913 0.10 +1.5 921,384 - Synpcc7942_0913 0.20 -1.7 921,391 - Synpcc7942_0913 0.21 -1.0 921,391 - Synpcc7942_0913 0.21 +0.1 921,460 - Synpcc7942_0913 0.35 +0.8 921,466 - Synpcc7942_0913 0.36 -0.0 921,468 + Synpcc7942_0913 0.37 +0.4 921,474 + Synpcc7942_0913 0.38 -0.8 921,489 + Synpcc7942_0913 0.41 -2.1 921,522 - Synpcc7942_0913 0.48 -1.6 921,544 - Synpcc7942_0913 0.52 +0.5 921,557 - Synpcc7942_0913 0.55 -0.0 921,583 - Synpcc7942_0913 0.60 -1.6 921,640 - Synpcc7942_0913 0.72 -0.0 921,670 + Synpcc7942_0913 0.78 -0.3 921,676 + Synpcc7942_0913 0.79 -0.0 921,691 + Synpcc7942_0913 0.82 +0.2 921,716 - Synpcc7942_0913 0.87 -0.6 921,735 + -0.0 921,747 + -0.4 921,755 - -1.8 921,784 - -1.6 921,784 - -2.5 921,786 + -0.2 921,786 + -1.7 921,786 - -1.7 921,794 - +1.2 921,794 - +0.5 921,795 + +0.4 921,819 - +2.6 921,821 - +0.2 921,861 - Synpcc7942_0914 0.13 +0.0 921,861 - Synpcc7942_0914 0.13 -0.3 921,920 + Synpcc7942_0914 0.23 -0.5 921,928 - Synpcc7942_0914 0.24 -1.0 921,930 - Synpcc7942_0914 0.25 -1.8 921,938 - Synpcc7942_0914 0.26 +0.4 921,988 + Synpcc7942_0914 0.34 +0.0 922,000 + Synpcc7942_0914 0.36 -2.3 922,003 - Synpcc7942_0914 0.36 +0.6 922,003 - Synpcc7942_0914 0.36 -0.3 922,054 + Synpcc7942_0914 0.45 +0.3 922,067 + Synpcc7942_0914 0.47 +0.2 922,072 + Synpcc7942_0914 0.48 +0.1 922,072 + Synpcc7942_0914 0.48 +0.2 922,072 + Synpcc7942_0914 0.48 +0.1 922,075 - Synpcc7942_0914 0.48 -0.4 922,077 + Synpcc7942_0914 0.49 -0.3 922,080 - Synpcc7942_0914 0.49 -0.3 922,082 + Synpcc7942_0914 0.49 -2.0 922,095 + Synpcc7942_0914 0.51 -1.0 922,099 + Synpcc7942_0914 0.52 -1.0 922,103 - Synpcc7942_0914 0.53 -1.3 922,132 + Synpcc7942_0914 0.58 -2.1 922,133 - Synpcc7942_0914 0.58 +0.3 922,133 - Synpcc7942_0914 0.58 +2.0 922,144 + Synpcc7942_0914 0.59 -3.4 922,144 + Synpcc7942_0914 0.59 -0.3 922,144 + Synpcc7942_0914 0.59 -0.6 922,144 + Synpcc7942_0914 0.59 -1.5 922,144 + Synpcc7942_0914 0.59 -0.8 922,152 - Synpcc7942_0914 0.61 +0.3 922,152 - Synpcc7942_0914 0.61 -0.8 922,154 + Synpcc7942_0914 0.61 +0.1 922,162 - Synpcc7942_0914 0.62 +1.7 922,172 + Synpcc7942_0914 0.64 +0.3 922,172 - Synpcc7942_0914 0.64 -0.2 922,180 - Synpcc7942_0914 0.65 -1.8 922,180 - Synpcc7942_0914 0.65 -1.8 922,183 + Synpcc7942_0914 0.66 -1.4 922,186 - Synpcc7942_0914 0.66 +0.4 922,191 - Synpcc7942_0914 0.67 -1.3 922,205 + Synpcc7942_0914 0.69 +1.0 922,213 - Synpcc7942_0914 0.71 -1.4 922,243 - Synpcc7942_0914 0.76 -0.9 922,249 - Synpcc7942_0914 0.77 -1.6 922,271 + Synpcc7942_0914 0.80 -0.4 922,275 - Synpcc7942_0914 0.81 +0.5 922,325 + Synpcc7942_0914 0.89 +1.0 922,333 - -0.6 922,338 - +1.0 922,370 - -0.2 922,379 - +1.5 922,379 - +1.4 922,387 + -1.8 922,846 + -0.6 922,867 + Synpcc7942_0916 0.15 -1.8 922,880 + Synpcc7942_0916 0.25 -1.8 922,903 + Synpcc7942_0916 0.43 -3.0 922,989 + -0.8 923,051 + +2.0 923,059 - +0.2 923,059 - -1.3 923,061 + -0.6 923,062 + +0.4 923,072 + -0.3 923,348 + -1.2 923,348 + +0.8 923,356 - -1.8 923,356 - +1.1 923,356 - +0.1 923,368 + -0.3 923,381 - -0.6
Or see this region's nucleotide sequence