Experiment: BG11 with Chlorite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ppsA and Synpcc7942_0782 are separated by 239 nucleotides Synpcc7942_0782 and hisG are separated by 32 nucleotides hisG and Synpcc7942_0784 are separated by 285 nucleotides
Synpcc7942_0781: ppsA - phosphoenolpyruvate synthase, at 774,004 to 776,520
ppsA
Synpcc7942_0782: Synpcc7942_0782 - ATPase, at 776,760 to 778,556
_0782
Synpcc7942_0783: hisG - ATP phosphoribosyltransferase catalytic subunit, at 778,589 to 779,245
hisG
Synpcc7942_0784: Synpcc7942_0784 - hypothetical protein, at 779,531 to 779,848
_0784
Position (kb) 776
777
778
779 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 775.762 kb on + strand, within ppsA at 775.762 kb on + strand, within ppsA at 775.762 kb on + strand, within ppsA at 775.762 kb on + strand, within ppsA at 775.770 kb on - strand, within ppsA at 775.791 kb on - strand, within ppsA at 775.797 kb on + strand, within ppsA at 775.853 kb on + strand, within ppsA at 775.868 kb on + strand, within ppsA at 775.869 kb on + strand, within ppsA at 775.877 kb on - strand, within ppsA at 775.886 kb on + strand, within ppsA at 775.893 kb on - strand, within ppsA at 775.916 kb on + strand, within ppsA at 775.916 kb on + strand, within ppsA at 775.929 kb on + strand, within ppsA at 775.934 kb on + strand, within ppsA at 775.988 kb on + strand, within ppsA at 776.025 kb on - strand, within ppsA at 776.030 kb on - strand, within ppsA at 776.109 kb on - strand, within ppsA at 776.118 kb on + strand, within ppsA at 776.148 kb on + strand, within ppsA at 776.148 kb on + strand, within ppsA at 776.156 kb on - strand, within ppsA at 776.156 kb on - strand, within ppsA at 776.156 kb on - strand, within ppsA at 776.156 kb on - strand, within ppsA at 776.156 kb on - strand, within ppsA at 776.243 kb on - strand, within ppsA at 776.249 kb on - strand, within ppsA at 776.256 kb on - strand, within ppsA at 776.260 kb on + strand, within ppsA at 776.260 kb on + strand, within ppsA at 776.268 kb on - strand, within ppsA at 776.275 kb on + strand at 776.301 kb on - strand at 776.357 kb on + strand at 776.366 kb on + strand at 776.367 kb on - strand at 776.371 kb on + strand at 776.379 kb on + strand at 776.390 kb on + strand at 776.398 kb on - strand at 776.422 kb on - strand at 776.440 kb on - strand at 776.446 kb on - strand at 776.448 kb on + strand at 776.456 kb on - strand at 776.506 kb on - strand at 776.517 kb on + strand at 776.525 kb on - strand at 776.528 kb on - strand at 776.530 kb on - strand at 776.543 kb on + strand at 776.551 kb on - strand at 776.654 kb on - strand at 776.691 kb on - strand at 776.720 kb on + strand at 776.728 kb on - strand at 776.731 kb on + strand at 776.743 kb on + strand at 776.744 kb on - strand at 776.775 kb on - strand at 777.088 kb on - strand, within Synpcc7942_0782 at 777.109 kb on + strand, within Synpcc7942_0782 at 777.127 kb on + strand, within Synpcc7942_0782 at 777.156 kb on + strand, within Synpcc7942_0782 at 777.168 kb on + strand, within Synpcc7942_0782 at 777.171 kb on + strand, within Synpcc7942_0782 at 777.200 kb on + strand, within Synpcc7942_0782 at 777.202 kb on - strand, within Synpcc7942_0782 at 777.248 kb on + strand, within Synpcc7942_0782 at 777.253 kb on + strand, within Synpcc7942_0782 at 777.351 kb on - strand, within Synpcc7942_0782 at 777.389 kb on + strand, within Synpcc7942_0782 at 777.528 kb on - strand, within Synpcc7942_0782 at 777.889 kb on - strand, within Synpcc7942_0782 at 777.953 kb on - strand, within Synpcc7942_0782 at 778.009 kb on - strand, within Synpcc7942_0782 at 778.012 kb on + strand, within Synpcc7942_0782 at 778.039 kb on + strand, within Synpcc7942_0782 at 778.047 kb on - strand, within Synpcc7942_0782 at 778.047 kb on - strand, within Synpcc7942_0782 at 778.113 kb on - strand, within Synpcc7942_0782 at 778.133 kb on - strand, within Synpcc7942_0782 at 778.191 kb on + strand, within Synpcc7942_0782 at 778.198 kb on + strand, within Synpcc7942_0782 at 778.206 kb on - strand, within Synpcc7942_0782 at 778.272 kb on - strand, within Synpcc7942_0782 at 778.277 kb on - strand at 778.277 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.326 kb on + strand, within Synpcc7942_0782 at 778.329 kb on - strand, within Synpcc7942_0782 at 778.332 kb on + strand, within Synpcc7942_0782 at 778.345 kb on - strand, within Synpcc7942_0782 at 778.345 kb on - strand, within Synpcc7942_0782 at 778.364 kb on + strand, within Synpcc7942_0782 at 778.372 kb on - strand, within Synpcc7942_0782 at 778.378 kb on + strand at 778.386 kb on - strand at 778.391 kb on - strand at 778.391 kb on - strand at 778.429 kb on + strand at 778.437 kb on - strand at 778.449 kb on - strand at 778.480 kb on + strand at 778.501 kb on + strand at 778.501 kb on + strand at 778.509 kb on - strand at 778.545 kb on - strand at 778.547 kb on - strand at 778.573 kb on - strand at 778.575 kb on + strand at 778.575 kb on + strand at 778.580 kb on + strand at 778.583 kb on - strand at 778.583 kb on - strand at 778.610 kb on - strand at 778.612 kb on + strand at 778.622 kb on - strand at 779.280 kb on - strand at 779.284 kb on + strand at 779.297 kb on - strand at 779.307 kb on - strand at 779.312 kb on - strand at 779.314 kb on + strand at 779.322 kb on - strand at 779.322 kb on - strand at 779.322 kb on - strand at 779.324 kb on + strand at 779.326 kb on + strand at 779.348 kb on - strand at 779.353 kb on - strand at 779.357 kb on + strand at 779.369 kb on + strand at 779.398 kb on - strand at 779.447 kb on + strand at 779.455 kb on - strand at 779.491 kb on + strand at 779.497 kb on - strand at 779.499 kb on - strand at 779.515 kb on - strand at 779.531 kb on + strand at 779.539 kb on - strand at 779.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chlorite 2.5 mM remove 775,762 + ppsA Synpcc7942_0781 0.70 -0.6 775,762 + ppsA Synpcc7942_0781 0.70 -2.1 775,762 + ppsA Synpcc7942_0781 0.70 +1.5 775,762 + ppsA Synpcc7942_0781 0.70 -1.5 775,770 - ppsA Synpcc7942_0781 0.70 +0.3 775,791 - ppsA Synpcc7942_0781 0.71 -1.3 775,797 + ppsA Synpcc7942_0781 0.71 -0.3 775,853 + ppsA Synpcc7942_0781 0.73 -0.3 775,868 + ppsA Synpcc7942_0781 0.74 +0.5 775,869 + ppsA Synpcc7942_0781 0.74 -0.0 775,877 - ppsA Synpcc7942_0781 0.74 -0.2 775,886 + ppsA Synpcc7942_0781 0.75 -1.6 775,893 - ppsA Synpcc7942_0781 0.75 +0.9 775,916 + ppsA Synpcc7942_0781 0.76 -0.8 775,916 + ppsA Synpcc7942_0781 0.76 -0.2 775,929 + ppsA Synpcc7942_0781 0.76 +0.2 775,934 + ppsA Synpcc7942_0781 0.77 -2.4 775,988 + ppsA Synpcc7942_0781 0.79 -2.3 776,025 - ppsA Synpcc7942_0781 0.80 -2.4 776,030 - ppsA Synpcc7942_0781 0.80 -1.6 776,109 - ppsA Synpcc7942_0781 0.84 -0.7 776,118 + ppsA Synpcc7942_0781 0.84 -0.2 776,148 + ppsA Synpcc7942_0781 0.85 +0.7 776,148 + ppsA Synpcc7942_0781 0.85 -0.1 776,156 - ppsA Synpcc7942_0781 0.85 -1.0 776,156 - ppsA Synpcc7942_0781 0.85 -0.3 776,156 - ppsA Synpcc7942_0781 0.85 -0.1 776,156 - ppsA Synpcc7942_0781 0.85 +0.9 776,156 - ppsA Synpcc7942_0781 0.85 -0.6 776,243 - ppsA Synpcc7942_0781 0.89 -0.3 776,249 - ppsA Synpcc7942_0781 0.89 +0.7 776,256 - ppsA Synpcc7942_0781 0.89 -0.8 776,260 + ppsA Synpcc7942_0781 0.90 +1.5 776,260 + ppsA Synpcc7942_0781 0.90 +0.3 776,268 - ppsA Synpcc7942_0781 0.90 -0.5 776,275 + +0.6 776,301 - +0.4 776,357 + -1.3 776,366 + -0.5 776,367 - +0.7 776,371 + +0.7 776,379 + -1.1 776,390 + +0.5 776,398 - -0.9 776,422 - -0.6 776,440 - -1.4 776,446 - +0.9 776,448 + -0.3 776,456 - +0.1 776,506 - -1.8 776,517 + +0.2 776,525 - -2.3 776,528 - -0.2 776,530 - +0.1 776,543 + -1.0 776,551 - -1.2 776,654 - +1.3 776,691 - -1.2 776,720 + -0.7 776,728 - +0.7 776,731 + -0.8 776,743 + +0.1 776,744 - -1.1 776,775 - +0.9 777,088 - Synpcc7942_0782 0.18 -0.7 777,109 + Synpcc7942_0782 0.19 +0.4 777,127 + Synpcc7942_0782 0.20 -4.3 777,156 + Synpcc7942_0782 0.22 -1.5 777,168 + Synpcc7942_0782 0.23 +0.9 777,171 + Synpcc7942_0782 0.23 -1.6 777,200 + Synpcc7942_0782 0.24 -1.3 777,202 - Synpcc7942_0782 0.25 -0.7 777,248 + Synpcc7942_0782 0.27 -1.2 777,253 + Synpcc7942_0782 0.27 -2.0 777,351 - Synpcc7942_0782 0.33 -0.3 777,389 + Synpcc7942_0782 0.35 -4.2 777,528 - Synpcc7942_0782 0.43 -1.4 777,889 - Synpcc7942_0782 0.63 -0.2 777,953 - Synpcc7942_0782 0.66 -0.2 778,009 - Synpcc7942_0782 0.70 -0.3 778,012 + Synpcc7942_0782 0.70 +0.2 778,039 + Synpcc7942_0782 0.71 -1.4 778,047 - Synpcc7942_0782 0.72 -0.4 778,047 - Synpcc7942_0782 0.72 -0.7 778,113 - Synpcc7942_0782 0.75 -1.0 778,133 - Synpcc7942_0782 0.76 -1.1 778,191 + Synpcc7942_0782 0.80 -1.5 778,198 + Synpcc7942_0782 0.80 -5.3 778,206 - Synpcc7942_0782 0.80 -1.3 778,272 - Synpcc7942_0782 0.84 -0.6 778,277 - -0.3 778,277 - Synpcc7942_0782 0.84 +0.6 778,324 - Synpcc7942_0782 0.87 -0.6 778,324 - Synpcc7942_0782 0.87 -2.0 778,324 - Synpcc7942_0782 0.87 -2.0 778,324 - Synpcc7942_0782 0.87 -0.1 778,326 + Synpcc7942_0782 0.87 -1.4 778,329 - Synpcc7942_0782 0.87 -0.9 778,332 + Synpcc7942_0782 0.87 -0.4 778,345 - Synpcc7942_0782 0.88 -0.3 778,345 - Synpcc7942_0782 0.88 -2.9 778,364 + Synpcc7942_0782 0.89 -0.5 778,372 - Synpcc7942_0782 0.90 +0.4 778,378 + +1.5 778,386 - -1.7 778,391 - -0.6 778,391 - -2.7 778,429 + +0.4 778,437 - +1.4 778,449 - +2.6 778,480 + +0.2 778,501 + -0.6 778,501 + -0.2 778,509 - -1.4 778,545 - +1.4 778,547 - -0.0 778,573 - -0.2 778,575 + -0.5 778,575 + -1.7 778,580 + +1.1 778,583 - -1.7 778,583 - -0.0 778,610 - +0.5 778,612 + -0.0 778,622 - -1.3 779,280 - -0.1 779,284 + -1.5 779,297 - -1.4 779,307 - +0.3 779,312 - -2.2 779,314 + -0.6 779,322 - +1.0 779,322 - -1.4 779,322 - -0.3 779,324 + +0.2 779,326 + -0.5 779,348 - +1.0 779,353 - +0.2 779,357 + -3.8 779,369 + -0.5 779,398 - -1.2 779,447 + -1.7 779,455 - -0.1 779,491 + +0.5 779,497 - -0.8 779,499 - -2.3 779,515 - +0.7 779,531 + -0.2 779,539 - -1.0 779,555 + +0.8
Or see this region's nucleotide sequence