Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_758

Experiment: Nitrate reduction, replicate C t3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_757 and Pf1N1B4_758 are separated by 316 nucleotidesPf1N1B4_758 and Pf1N1B4_759 are separated by 197 nucleotidesPf1N1B4_759 and Pf1N1B4_760 are separated by 97 nucleotides Pf1N1B4_757 - phage-related integrase, at 860,562 to 861,812 _757 Pf1N1B4_758 - Bacterioferritin, at 862,129 to 862,602 _758 Pf1N1B4_759 - Glutaredoxin-related protein, at 862,800 to 863,141 _759 Pf1N1B4_760 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 863,239 to 865,344 _760 Position (kb) 862 863Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 861.188 kb on + strand, within Pf1N1B4_757at 861.189 kb on - strand, within Pf1N1B4_757at 861.284 kb on + strand, within Pf1N1B4_757at 861.284 kb on + strand, within Pf1N1B4_757at 861.285 kb on - strand, within Pf1N1B4_757at 861.285 kb on - strand, within Pf1N1B4_757at 861.285 kb on - strand, within Pf1N1B4_757at 861.285 kb on - strand, within Pf1N1B4_757at 861.285 kb on - strand, within Pf1N1B4_757at 861.285 kb on - strand, within Pf1N1B4_757at 861.285 kb on - strand, within Pf1N1B4_757at 861.293 kb on + strand, within Pf1N1B4_757at 861.293 kb on + strand, within Pf1N1B4_757at 861.294 kb on - strand, within Pf1N1B4_757at 861.398 kb on + strand, within Pf1N1B4_757at 861.398 kb on + strand, within Pf1N1B4_757at 861.399 kb on - strand, within Pf1N1B4_757at 861.419 kb on - strand, within Pf1N1B4_757at 861.419 kb on - strand, within Pf1N1B4_757at 861.481 kb on + strand, within Pf1N1B4_757at 861.482 kb on - strand, within Pf1N1B4_757at 861.590 kb on + strand, within Pf1N1B4_757at 861.608 kb on + strand, within Pf1N1B4_757at 861.608 kb on + strand, within Pf1N1B4_757at 861.608 kb on + strand, within Pf1N1B4_757at 861.711 kb on + strandat 861.712 kb on - strandat 861.734 kb on - strandat 861.736 kb on + strandat 861.737 kb on - strandat 861.890 kb on - strandat 861.897 kb on + strandat 861.897 kb on + strandat 861.897 kb on + strandat 861.898 kb on - strandat 861.898 kb on - strandat 861.905 kb on - strandat 861.905 kb on - strandat 861.906 kb on + strandat 861.906 kb on + strandat 861.907 kb on - strandat 861.907 kb on - strandat 861.907 kb on - strandat 861.907 kb on - strandat 861.907 kb on - strandat 861.907 kb on - strandat 861.907 kb on - strandat 861.907 kb on - strandat 861.907 kb on - strandat 861.907 kb on - strandat 861.907 kb on - strandat 861.912 kb on + strandat 861.916 kb on - strandat 861.916 kb on - strandat 861.916 kb on - strandat 861.916 kb on - strandat 861.916 kb on - strandat 862.044 kb on - strandat 862.058 kb on + strandat 862.058 kb on + strandat 862.058 kb on + strandat 862.059 kb on - strandat 862.078 kb on - strandat 862.100 kb on + strandat 862.100 kb on + strandat 862.100 kb on + strandat 862.101 kb on - strandat 862.101 kb on - strandat 862.109 kb on - strandat 862.109 kb on - strandat 862.143 kb on + strandat 862.201 kb on + strand, within Pf1N1B4_758at 862.201 kb on + strand, within Pf1N1B4_758at 862.222 kb on + strand, within Pf1N1B4_758at 862.222 kb on + strand, within Pf1N1B4_758at 862.222 kb on + strand, within Pf1N1B4_758at 862.222 kb on + strand, within Pf1N1B4_758at 862.222 kb on + strand, within Pf1N1B4_758at 862.222 kb on + strand, within Pf1N1B4_758at 862.222 kb on + strand, within Pf1N1B4_758at 862.223 kb on - strand, within Pf1N1B4_758at 862.223 kb on - strand, within Pf1N1B4_758at 862.223 kb on - strandat 862.261 kb on + strand, within Pf1N1B4_758at 862.573 kb on + strandat 862.573 kb on + strandat 862.574 kb on - strandat 862.574 kb on - strandat 862.574 kb on - strandat 862.600 kb on + strandat 862.600 kb on + strandat 862.601 kb on - strandat 862.607 kb on + strandat 862.629 kb on + strandat 862.630 kb on - strandat 862.649 kb on + strandat 862.650 kb on - strandat 862.651 kb on + strandat 862.667 kb on + strandat 862.730 kb on + strandat 862.744 kb on + strandat 862.744 kb on + strandat 862.744 kb on + strandat 862.744 kb on + strandat 862.744 kb on + strandat 862.744 kb on + strandat 862.745 kb on - strandat 862.745 kb on - strandat 862.745 kb on - strandat 862.952 kb on - strand, within Pf1N1B4_759at 863.000 kb on - strand, within Pf1N1B4_759at 863.086 kb on + strand, within Pf1N1B4_759at 863.087 kb on - strand, within Pf1N1B4_759at 863.194 kb on + strandat 863.194 kb on + strandat 863.567 kb on + strand, within Pf1N1B4_760at 863.567 kb on + strand, within Pf1N1B4_760at 863.568 kb on - strandat 863.568 kb on - strand, within Pf1N1B4_760at 863.568 kb on - strand, within Pf1N1B4_760at 863.568 kb on - strand, within Pf1N1B4_760at 863.568 kb on - strand, within Pf1N1B4_760

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t3
remove
861,188 + Pf1N1B4_757 0.50 -3.3
861,189 - Pf1N1B4_757 0.50 -0.1
861,284 + Pf1N1B4_757 0.58 -2.2
861,284 + Pf1N1B4_757 0.58 -0.1
861,285 - Pf1N1B4_757 0.58 -0.9
861,285 - Pf1N1B4_757 0.58 -0.7
861,285 - Pf1N1B4_757 0.58 -0.1
861,285 - Pf1N1B4_757 0.58 -0.1
861,285 - Pf1N1B4_757 0.58 -3.1
861,285 - Pf1N1B4_757 0.58 -0.1
861,285 - Pf1N1B4_757 0.58 -0.1
861,293 + Pf1N1B4_757 0.58 -1.4
861,293 + Pf1N1B4_757 0.58 -0.1
861,294 - Pf1N1B4_757 0.59 -0.1
861,398 + Pf1N1B4_757 0.67 -3.8
861,398 + Pf1N1B4_757 0.67 -1.9
861,399 - Pf1N1B4_757 0.67 -0.1
861,419 - Pf1N1B4_757 0.69 -2.6
861,419 - Pf1N1B4_757 0.69 -0.1
861,481 + Pf1N1B4_757 0.73 -0.1
861,482 - Pf1N1B4_757 0.74 -0.1
861,590 + Pf1N1B4_757 0.82 -0.1
861,608 + Pf1N1B4_757 0.84 -3.2
861,608 + Pf1N1B4_757 0.84 -0.1
861,608 + Pf1N1B4_757 0.84 -0.1
861,711 + -2.7
861,712 - -3.4
861,734 - -1.9
861,736 + -0.1
861,737 - -0.1
861,890 - -0.1
861,897 + -0.1
861,897 + -0.1
861,897 + -2.7
861,898 - -0.1
861,898 - -0.1
861,905 - -0.1
861,905 - -0.1
861,906 + -2.7
861,906 + -0.1
861,907 - -2.2
861,907 - -0.1
861,907 - -0.1
861,907 - -2.2
861,907 - -0.1
861,907 - -0.1
861,907 - -0.1
861,907 - -0.1
861,907 - -3.2
861,907 - -0.1
861,907 - -0.1
861,912 + -3.1
861,916 - -2.5
861,916 - -0.1
861,916 - -4.1
861,916 - -0.1
861,916 - -2.1
862,044 - -0.1
862,058 + -0.1
862,058 + -0.1
862,058 + -2.1
862,059 - -2.1
862,078 - -0.1
862,100 + -1.2
862,100 + -0.1
862,100 + -0.1
862,101 - -0.1
862,101 - -0.1
862,109 - -0.1
862,109 - -0.1
862,143 + -0.1
862,201 + Pf1N1B4_758 0.15 -4.1
862,201 + Pf1N1B4_758 0.15 -0.1
862,222 + Pf1N1B4_758 0.20 -0.1
862,222 + Pf1N1B4_758 0.20 -2.7
862,222 + Pf1N1B4_758 0.20 -0.1
862,222 + Pf1N1B4_758 0.20 -0.1
862,222 + Pf1N1B4_758 0.20 -0.1
862,222 + Pf1N1B4_758 0.20 -4.5
862,222 + Pf1N1B4_758 0.20 -0.1
862,223 - Pf1N1B4_758 0.20 -3.4
862,223 - Pf1N1B4_758 0.20 -0.1
862,223 - -0.1
862,261 + Pf1N1B4_758 0.28 -0.1
862,573 + -0.1
862,573 + -0.1
862,574 - -1.0
862,574 - -2.5
862,574 - -0.1
862,600 + -1.5
862,600 + -0.1
862,601 - -0.1
862,607 + -4.9
862,629 + -0.1
862,630 - -0.1
862,649 + -0.1
862,650 - -0.1
862,651 + -0.1
862,667 + -0.1
862,730 + -5.0
862,744 + -3.9
862,744 + -0.1
862,744 + -0.1
862,744 + -2.9
862,744 + -5.9
862,744 + -0.1
862,745 - -4.7
862,745 - -4.9
862,745 - -4.2
862,952 - Pf1N1B4_759 0.44 -0.7
863,000 - Pf1N1B4_759 0.58 -1.7
863,086 + Pf1N1B4_759 0.84 -0.1
863,087 - Pf1N1B4_759 0.84 -0.1
863,194 + -0.1
863,194 + -1.7
863,567 + Pf1N1B4_760 0.16 -1.5
863,567 + Pf1N1B4_760 0.16 -0.1
863,568 - -1.5
863,568 - Pf1N1B4_760 0.16 -2.7
863,568 - Pf1N1B4_760 0.16 -2.9
863,568 - Pf1N1B4_760 0.16 -0.1
863,568 - Pf1N1B4_760 0.16 -2.6

Or see this region's nucleotide sequence