Experiment: Nitrate reduction, replicate C t3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5479 and Pf1N1B4_5480 are separated by 0 nucleotides Pf1N1B4_5480 and Pf1N1B4_5481 are separated by 964 nucleotides
Pf1N1B4_5479 - hypothetical protein, at 230,400 to 230,759
_5479
Pf1N1B4_5480 - hypothetical protein, at 230,760 to 231,002
_5480
Pf1N1B4_5481 - hypothetical protein, at 231,967 to 232,113
_5481
Position (kb) 230
231
232 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 229.944 kb on - strand at 229.948 kb on - strand at 229.968 kb on - strand at 230.049 kb on - strand at 230.056 kb on - strand at 230.151 kb on + strand at 230.151 kb on + strand at 230.152 kb on - strand at 230.255 kb on + strand at 230.273 kb on + strand at 230.274 kb on - strand at 230.348 kb on + strand at 230.348 kb on + strand at 230.348 kb on + strand at 230.349 kb on - strand at 230.549 kb on + strand, within Pf1N1B4_5479 at 230.550 kb on - strand, within Pf1N1B4_5479 at 230.550 kb on - strand, within Pf1N1B4_5479 at 230.550 kb on - strand, within Pf1N1B4_5479 at 230.553 kb on + strand, within Pf1N1B4_5479 at 230.554 kb on - strand, within Pf1N1B4_5479 at 230.554 kb on - strand at 230.554 kb on - strand, within Pf1N1B4_5479 at 230.577 kb on + strand, within Pf1N1B4_5479 at 230.577 kb on + strand, within Pf1N1B4_5479 at 230.577 kb on + strand, within Pf1N1B4_5479 at 230.577 kb on + strand, within Pf1N1B4_5479 at 230.577 kb on + strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.643 kb on + strand, within Pf1N1B4_5479 at 230.697 kb on - strand, within Pf1N1B4_5479 at 230.697 kb on - strand, within Pf1N1B4_5479 at 230.697 kb on - strand, within Pf1N1B4_5479 at 230.697 kb on - strand, within Pf1N1B4_5479 at 230.759 kb on + strand at 230.759 kb on + strand at 230.760 kb on - strand at 230.857 kb on + strand, within Pf1N1B4_5480 at 230.857 kb on + strand, within Pf1N1B4_5480 at 230.857 kb on + strand, within Pf1N1B4_5480 at 230.857 kb on + strand, within Pf1N1B4_5480 at 230.857 kb on + strand, within Pf1N1B4_5480 at 230.858 kb on - strand, within Pf1N1B4_5480 at 230.858 kb on - strand, within Pf1N1B4_5480 at 230.858 kb on - strand, within Pf1N1B4_5480 at 231.000 kb on + strand at 231.039 kb on + strand at 231.229 kb on + strand at 231.230 kb on - strand at 231.230 kb on - strand at 231.230 kb on - strand at 231.230 kb on - strand at 231.230 kb on - strand at 231.230 kb on - strand at 231.246 kb on + strand at 231.247 kb on - strand at 231.247 kb on - strand at 231.247 kb on - strand at 231.282 kb on - strand at 231.305 kb on - strand at 231.305 kb on - strand at 231.331 kb on + strand at 231.331 kb on + strand at 231.331 kb on + strand at 231.331 kb on + strand at 231.331 kb on + strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.351 kb on + strand at 231.351 kb on + strand at 231.351 kb on + strand at 231.352 kb on - strand at 231.352 kb on - strand at 231.352 kb on - strand at 231.412 kb on - strand at 231.518 kb on + strand at 231.519 kb on - strand at 231.519 kb on - strand at 231.543 kb on + strand at 231.544 kb on - strand at 231.568 kb on - strand at 231.663 kb on + strand at 231.769 kb on + strand at 231.790 kb on + strand at 231.791 kb on - strand at 231.857 kb on + strand at 231.857 kb on + strand at 231.857 kb on + strand at 231.857 kb on + strand at 231.857 kb on + strand at 231.857 kb on + strand at 231.858 kb on - strand at 231.858 kb on - strand at 231.858 kb on - strand at 231.858 kb on - strand at 231.858 kb on - strand at 231.858 kb on - strand at 231.858 kb on - strand at 231.859 kb on + strand at 231.859 kb on + strand at 231.860 kb on - strand at 231.860 kb on - strand at 231.860 kb on - strand at 231.934 kb on + strand at 231.934 kb on + strand at 231.934 kb on + strand at 231.934 kb on + strand at 231.934 kb on + strand at 231.934 kb on + strand at 231.934 kb on + strand at 231.935 kb on - strand at 231.935 kb on - strand at 231.935 kb on - strand at 231.935 kb on - strand at 231.935 kb on - strand at 231.936 kb on + strand at 231.936 kb on + strand at 231.936 kb on + strand at 231.936 kb on + strand at 231.936 kb on + strand at 231.937 kb on - strand at 231.968 kb on + strand at 231.968 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t3 remove 229,944 - -1.7 229,948 - +0.0 229,968 - +0.0 230,049 - +0.0 230,056 - +0.0 230,151 + +0.0 230,151 + +0.0 230,152 - -3.2 230,255 + +0.0 230,273 + +0.0 230,274 - -1.9 230,348 + -3.0 230,348 + -2.5 230,348 + +1.0 230,349 - +0.0 230,549 + Pf1N1B4_5479 0.41 -2.2 230,550 - Pf1N1B4_5479 0.42 -3.2 230,550 - Pf1N1B4_5479 0.42 +0.0 230,550 - Pf1N1B4_5479 0.42 +0.0 230,553 + Pf1N1B4_5479 0.42 -1.0 230,554 - Pf1N1B4_5479 0.43 +0.0 230,554 - +0.0 230,554 - Pf1N1B4_5479 0.43 +0.0 230,577 + Pf1N1B4_5479 0.49 +0.0 230,577 + Pf1N1B4_5479 0.49 -1.8 230,577 + Pf1N1B4_5479 0.49 +0.0 230,577 + Pf1N1B4_5479 0.49 -2.5 230,577 + Pf1N1B4_5479 0.49 +0.0 230,578 - Pf1N1B4_5479 0.49 -3.7 230,578 - Pf1N1B4_5479 0.49 +0.0 230,578 - Pf1N1B4_5479 0.49 +0.0 230,578 - Pf1N1B4_5479 0.49 +0.0 230,578 - Pf1N1B4_5479 0.49 +0.0 230,578 - Pf1N1B4_5479 0.49 +0.0 230,578 - Pf1N1B4_5479 0.49 -2.5 230,643 + Pf1N1B4_5479 0.68 -2.4 230,697 - Pf1N1B4_5479 0.82 +0.0 230,697 - Pf1N1B4_5479 0.82 -1.9 230,697 - Pf1N1B4_5479 0.82 -3.0 230,697 - Pf1N1B4_5479 0.82 +0.0 230,759 + +0.0 230,759 + -2.7 230,760 - +0.0 230,857 + Pf1N1B4_5480 0.40 -3.7 230,857 + Pf1N1B4_5480 0.40 +0.0 230,857 + Pf1N1B4_5480 0.40 -3.3 230,857 + Pf1N1B4_5480 0.40 +0.0 230,857 + Pf1N1B4_5480 0.40 +0.0 230,858 - Pf1N1B4_5480 0.40 +0.0 230,858 - Pf1N1B4_5480 0.40 +0.0 230,858 - Pf1N1B4_5480 0.40 -3.5 231,000 + -2.5 231,039 + +0.0 231,229 + +0.0 231,230 - +0.0 231,230 - -2.3 231,230 - -2.7 231,230 - -2.3 231,230 - +0.0 231,230 - -1.9 231,246 + -1.8 231,247 - +0.0 231,247 - +0.0 231,247 - -2.6 231,282 - +0.0 231,305 - +0.0 231,305 - -3.9 231,331 + -2.2 231,331 + +0.0 231,331 + +0.0 231,331 + +0.0 231,331 + -2.9 231,332 - -1.0 231,332 - +0.0 231,332 - +0.0 231,332 - +0.0 231,332 - -2.7 231,332 - -3.0 231,332 - +0.0 231,332 - +0.0 231,332 - +0.0 231,332 - +0.0 231,332 - +0.0 231,332 - +0.0 231,351 + +0.0 231,351 + -3.4 231,351 + -2.0 231,352 - +0.0 231,352 - +0.0 231,352 - +0.0 231,412 - +0.0 231,518 + +0.0 231,519 - +0.0 231,519 - +0.0 231,543 + +0.0 231,544 - +0.0 231,568 - -3.1 231,663 + -4.3 231,769 + +0.0 231,790 + +0.0 231,791 - +0.0 231,857 + +0.0 231,857 + +0.0 231,857 + +0.0 231,857 + +0.0 231,857 + -2.1 231,857 + +0.0 231,858 - +0.0 231,858 - -2.7 231,858 - +0.0 231,858 - -4.4 231,858 - +0.0 231,858 - +0.0 231,858 - +0.0 231,859 + +0.0 231,859 + -2.6 231,860 - -4.1 231,860 - +0.0 231,860 - +0.0 231,934 + -1.7 231,934 + -2.6 231,934 + +0.0 231,934 + +0.0 231,934 + -2.3 231,934 + +0.0 231,934 + +0.0 231,935 - +0.0 231,935 - +0.0 231,935 - +0.0 231,935 - +0.0 231,935 - +0.0 231,936 + +0.0 231,936 + +0.0 231,936 + +0.0 231,936 + +0.0 231,936 + +0.0 231,937 - -2.8 231,968 + +0.0 231,968 + -2.4
Or see this region's nucleotide sequence