Experiment: Nitrate reduction, replicate C t3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5370 and Pf1N1B4_5371 are separated by 55 nucleotides Pf1N1B4_5371 and Pf1N1B4_5372 are separated by 390 nucleotides Pf1N1B4_5372 and Pf1N1B4_5373 are separated by 114 nucleotides
Pf1N1B4_5370 - hypothetical protein, at 102,926 to 103,240
_5370
Pf1N1B4_5371 - hypothetical protein, at 103,296 to 103,496
_5371
Pf1N1B4_5372 - hypothetical protein, at 103,887 to 104,117
_5372
Pf1N1B4_5373 - hypothetical protein, at 104,232 to 104,420
_5373
Position (kb) 102
103
104 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 102.016 kb on + strand at 102.017 kb on - strand at 102.099 kb on - strand at 102.099 kb on - strand at 102.099 kb on - strand at 102.137 kb on + strand at 102.137 kb on + strand at 102.137 kb on + strand at 102.137 kb on + strand at 102.137 kb on + strand at 102.137 kb on + strand at 102.137 kb on + strand at 102.137 kb on + strand at 102.137 kb on + strand at 102.137 kb on + strand at 102.137 kb on + strand at 102.138 kb on - strand at 102.138 kb on - strand at 102.138 kb on - strand at 102.138 kb on - strand at 102.138 kb on - strand at 102.138 kb on - strand at 102.138 kb on - strand at 102.138 kb on - strand at 102.382 kb on + strand at 102.382 kb on + strand at 102.425 kb on + strand at 102.446 kb on + strand at 102.451 kb on + strand at 102.451 kb on + strand at 102.456 kb on - strand at 102.456 kb on - strand at 102.477 kb on + strand at 102.477 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.498 kb on - strand at 102.498 kb on - strand at 102.498 kb on - strand at 102.498 kb on - strand at 102.560 kb on + strand at 102.561 kb on - strand at 102.627 kb on + strand at 102.843 kb on - strand at 102.843 kb on - strand at 102.853 kb on + strand at 102.859 kb on - strand at 103.126 kb on + strand, within Pf1N1B4_5370 at 103.126 kb on + strand, within Pf1N1B4_5370 at 103.173 kb on + strand, within Pf1N1B4_5370 at 103.238 kb on + strand at 103.244 kb on - strand at 103.244 kb on - strand at 103.244 kb on - strand at 103.261 kb on + strand at 103.261 kb on + strand at 103.262 kb on - strand at 103.262 kb on - strand at 103.284 kb on - strand at 103.291 kb on - strand at 103.291 kb on - strand at 103.344 kb on + strand at 103.345 kb on - strand, within Pf1N1B4_5371 at 103.366 kb on - strand, within Pf1N1B4_5371 at 103.366 kb on - strand at 103.408 kb on + strand, within Pf1N1B4_5371 at 103.542 kb on + strand at 103.542 kb on + strand at 103.543 kb on - strand at 103.543 kb on - strand at 103.543 kb on - strand at 103.543 kb on - strand at 103.593 kb on + strand at 103.593 kb on + strand at 103.594 kb on - strand at 103.594 kb on - strand at 103.717 kb on + strand at 103.720 kb on + strand at 103.720 kb on + strand at 103.721 kb on - strand at 103.752 kb on + strand at 103.767 kb on - strand at 103.807 kb on + strand at 103.899 kb on + strand at 103.899 kb on + strand at 103.899 kb on + strand at 103.899 kb on + strand at 103.899 kb on + strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 104.094 kb on + strand, within Pf1N1B4_5372 at 104.095 kb on - strand at 104.095 kb on - strand at 104.116 kb on - strand at 104.116 kb on - strand at 104.120 kb on - strand at 104.224 kb on + strand at 104.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t3 remove 102,016 + +0.0 102,017 - +0.0 102,099 - +0.0 102,099 - -3.9 102,099 - +0.0 102,137 + -4.2 102,137 + -2.4 102,137 + +0.0 102,137 + -3.6 102,137 + +0.0 102,137 + +0.0 102,137 + +0.0 102,137 + +0.0 102,137 + -2.2 102,137 + -2.3 102,137 + +0.0 102,138 - +0.0 102,138 - +0.0 102,138 - +0.0 102,138 - +0.0 102,138 - +0.0 102,138 - +0.0 102,138 - -4.4 102,138 - +0.0 102,382 + +0.0 102,382 + +0.0 102,425 + +0.0 102,446 + +0.0 102,451 + +0.0 102,451 + +0.0 102,456 - -3.0 102,456 - -1.0 102,477 + +0.0 102,477 + +0.0 102,497 + +0.0 102,497 + +0.0 102,497 + -1.3 102,497 + +0.0 102,497 + +0.0 102,497 + -2.1 102,497 + -2.3 102,497 + +0.0 102,498 - -1.6 102,498 - +0.0 102,498 - +0.0 102,498 - +0.0 102,560 + -3.2 102,561 - +0.0 102,627 + +0.0 102,843 - -2.5 102,843 - -1.5 102,853 + +0.0 102,859 - +0.0 103,126 + Pf1N1B4_5370 0.63 +0.0 103,126 + Pf1N1B4_5370 0.63 +0.0 103,173 + Pf1N1B4_5370 0.78 -3.4 103,238 + -2.5 103,244 - +0.0 103,244 - +0.0 103,244 - -2.3 103,261 + -1.9 103,261 + -2.8 103,262 - +0.0 103,262 - +0.0 103,284 - +0.0 103,291 - +0.0 103,291 - -1.0 103,344 + +0.0 103,345 - Pf1N1B4_5371 0.24 +0.0 103,366 - Pf1N1B4_5371 0.35 -3.4 103,366 - -2.3 103,408 + Pf1N1B4_5371 0.56 +0.0 103,542 + +0.0 103,542 + +0.0 103,543 - +0.0 103,543 - -2.0 103,543 - +0.0 103,543 - -3.2 103,593 + +0.0 103,593 + +0.0 103,594 - -2.0 103,594 - -0.5 103,717 + +0.0 103,720 + +0.0 103,720 + +0.0 103,721 - -4.1 103,752 + +0.0 103,767 - +0.0 103,807 + +0.0 103,899 + -4.2 103,899 + +0.0 103,899 + -2.9 103,899 + -2.4 103,899 + +0.0 103,900 - +0.0 103,900 - +0.0 103,900 - -0.6 103,900 - +0.0 103,900 - -2.2 103,900 - +0.0 103,900 - +0.0 103,900 - -1.8 103,900 - +0.0 103,900 - +0.0 103,900 - +0.0 103,900 - -1.8 103,900 - -2.7 103,900 - +1.6 103,900 - -2.0 103,900 - +0.0 104,094 + Pf1N1B4_5372 0.90 -3.5 104,095 - +0.0 104,095 - +0.0 104,116 - +0.0 104,116 - +0.0 104,120 - +0.0 104,224 + +0.0 104,225 - -4.0
Or see this region's nucleotide sequence