Experiment: Nitrate reduction, replicate C t3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5316 and Pf1N1B4_5317 overlap by 4 nucleotides Pf1N1B4_5317 and Pf1N1B4_5318 are separated by 662 nucleotides
Pf1N1B4_5316 - hypothetical protein, at 66,884 to 67,099
_5316
Pf1N1B4_5317 - hypothetical protein, at 67,096 to 67,596
_5317
Pf1N1B4_5318 - hypothetical protein, at 68,259 to 68,429
_5318
Position (kb) 67
68 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 66.098 kb on + strand at 66.099 kb on - strand at 66.109 kb on + strand at 66.109 kb on + strand at 66.109 kb on + strand at 66.110 kb on - strand at 66.110 kb on - strand at 66.132 kb on + strand at 66.132 kb on + strand at 66.132 kb on + strand at 66.132 kb on + strand at 66.133 kb on - strand at 66.133 kb on - strand at 66.133 kb on - strand at 66.133 kb on - strand at 66.222 kb on + strand at 66.222 kb on + strand at 66.222 kb on + strand at 66.484 kb on - strand at 66.484 kb on - strand at 66.502 kb on + strand at 66.502 kb on + strand at 66.502 kb on + strand at 66.502 kb on + strand at 66.502 kb on + strand at 66.584 kb on + strand at 66.584 kb on + strand at 66.585 kb on - strand at 66.648 kb on - strand at 66.740 kb on + strand at 66.740 kb on + strand at 66.740 kb on + strand at 66.741 kb on - strand at 66.741 kb on - strand at 66.741 kb on - strand at 66.795 kb on + strand at 66.795 kb on + strand at 66.795 kb on + strand at 66.795 kb on + strand at 66.795 kb on + strand at 66.795 kb on + strand at 66.795 kb on + strand at 66.795 kb on + strand at 66.795 kb on + strand at 66.796 kb on - strand at 66.796 kb on - strand at 66.796 kb on - strand at 66.796 kb on - strand at 66.796 kb on - strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.799 kb on + strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.800 kb on - strand at 66.849 kb on - strand at 66.929 kb on + strand, within Pf1N1B4_5316 at 66.929 kb on + strand, within Pf1N1B4_5316 at 66.983 kb on + strand, within Pf1N1B4_5316 at 67.043 kb on + strand, within Pf1N1B4_5316 at 67.043 kb on + strand, within Pf1N1B4_5316 at 67.044 kb on - strand, within Pf1N1B4_5316 at 67.129 kb on + strand at 67.189 kb on + strand, within Pf1N1B4_5317 at 67.189 kb on + strand, within Pf1N1B4_5317 at 67.190 kb on - strand, within Pf1N1B4_5317 at 67.190 kb on - strand, within Pf1N1B4_5317 at 67.206 kb on + strand, within Pf1N1B4_5317 at 67.206 kb on + strand, within Pf1N1B4_5317 at 67.435 kb on + strand, within Pf1N1B4_5317 at 67.435 kb on + strand, within Pf1N1B4_5317 at 67.435 kb on + strand, within Pf1N1B4_5317 at 67.435 kb on + strand, within Pf1N1B4_5317 at 67.435 kb on + strand, within Pf1N1B4_5317 at 67.436 kb on - strand, within Pf1N1B4_5317 at 67.436 kb on - strand, within Pf1N1B4_5317 at 67.436 kb on - strand, within Pf1N1B4_5317 at 67.436 kb on - strand, within Pf1N1B4_5317 at 67.545 kb on + strand, within Pf1N1B4_5317 at 67.545 kb on + strand at 67.644 kb on + strand at 67.644 kb on + strand at 67.644 kb on + strand at 67.645 kb on - strand at 67.645 kb on - strand at 67.645 kb on - strand at 67.717 kb on + strand at 67.718 kb on - strand at 67.893 kb on - strand at 67.893 kb on - strand at 67.918 kb on + strand at 67.918 kb on + strand at 67.918 kb on + strand at 67.918 kb on + strand at 67.919 kb on - strand at 67.919 kb on - strand at 67.919 kb on - strand at 68.083 kb on + strand at 68.083 kb on + strand at 68.083 kb on + strand at 68.084 kb on - strand at 68.084 kb on - strand at 68.089 kb on + strand at 68.089 kb on + strand at 68.090 kb on - strand at 68.090 kb on - strand at 68.090 kb on - strand at 68.090 kb on - strand at 68.104 kb on + strand at 68.105 kb on - strand at 68.105 kb on - strand at 68.105 kb on - strand at 68.105 kb on - strand at 68.105 kb on - strand at 68.136 kb on - strand at 68.136 kb on - strand at 68.136 kb on - strand at 68.136 kb on - strand at 68.136 kb on - strand at 68.150 kb on - strand at 68.170 kb on - strand at 68.240 kb on + strand at 68.241 kb on - strand at 68.259 kb on - strand at 68.398 kb on - strand, within Pf1N1B4_5318 at 68.533 kb on + strand at 68.534 kb on - strand at 68.534 kb on - strand at 68.542 kb on + strand at 68.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t3 remove 66,098 + -1.8 66,099 - +0.0 66,109 + +0.0 66,109 + +0.0 66,109 + +0.0 66,110 - +0.0 66,110 - +0.0 66,132 + +0.0 66,132 + +0.0 66,132 + -4.2 66,132 + +0.0 66,133 - -3.4 66,133 - +0.0 66,133 - +0.0 66,133 - -2.9 66,222 + +0.0 66,222 + +0.0 66,222 + -3.2 66,484 - -1.0 66,484 - +0.0 66,502 + +0.0 66,502 + -2.4 66,502 + -3.6 66,502 + -1.0 66,502 + +0.0 66,584 + -3.6 66,584 + +0.0 66,585 - +0.0 66,648 - +0.0 66,740 + -1.3 66,740 + +0.0 66,740 + -5.5 66,741 - +0.0 66,741 - +0.0 66,741 - -3.5 66,795 + -1.8 66,795 + -3.4 66,795 + -2.1 66,795 + +0.0 66,795 + +0.0 66,795 + +0.0 66,795 + +0.0 66,795 + +0.0 66,795 + +0.0 66,796 - +0.0 66,796 - +0.0 66,796 - +0.0 66,796 - -2.5 66,796 - +0.0 66,799 + -1.9 66,799 + +0.0 66,799 + +0.0 66,799 + +0.0 66,799 + -1.9 66,799 + -1.2 66,799 + -1.5 66,799 + +0.0 66,799 + +0.0 66,799 + +0.0 66,799 + +0.0 66,799 + -2.2 66,799 + +0.0 66,800 - -1.9 66,800 - +0.0 66,800 - +0.0 66,800 - +0.0 66,800 - +0.0 66,800 - -3.0 66,800 - -2.0 66,800 - +0.0 66,800 - +0.0 66,800 - +0.0 66,800 - +0.0 66,800 - +0.0 66,800 - +0.0 66,800 - -1.4 66,800 - +0.0 66,800 - -3.8 66,849 - +0.0 66,929 + Pf1N1B4_5316 0.21 +0.0 66,929 + Pf1N1B4_5316 0.21 -6.0 66,983 + Pf1N1B4_5316 0.46 +0.0 67,043 + Pf1N1B4_5316 0.74 +0.0 67,043 + Pf1N1B4_5316 0.74 +0.0 67,044 - Pf1N1B4_5316 0.74 +0.0 67,129 + +0.0 67,189 + Pf1N1B4_5317 0.19 -3.5 67,189 + Pf1N1B4_5317 0.19 +0.0 67,190 - Pf1N1B4_5317 0.19 -3.0 67,190 - Pf1N1B4_5317 0.19 +0.0 67,206 + Pf1N1B4_5317 0.22 +0.0 67,206 + Pf1N1B4_5317 0.22 +0.0 67,435 + Pf1N1B4_5317 0.68 +0.0 67,435 + Pf1N1B4_5317 0.68 -2.5 67,435 + Pf1N1B4_5317 0.68 +0.0 67,435 + Pf1N1B4_5317 0.68 -5.3 67,435 + Pf1N1B4_5317 0.68 -3.3 67,436 - Pf1N1B4_5317 0.68 +0.0 67,436 - Pf1N1B4_5317 0.68 -3.1 67,436 - Pf1N1B4_5317 0.68 -3.9 67,436 - Pf1N1B4_5317 0.68 +0.0 67,545 + Pf1N1B4_5317 0.90 -4.0 67,545 + +0.0 67,644 + +0.0 67,644 + +0.0 67,644 + +0.0 67,645 - +0.0 67,645 - -2.0 67,645 - +0.0 67,717 + +0.0 67,718 - -1.3 67,893 - +0.0 67,893 - -4.1 67,918 + +0.0 67,918 + -1.6 67,918 + +0.0 67,918 + +0.0 67,919 - -3.1 67,919 - +0.0 67,919 - -3.0 68,083 + +0.0 68,083 + +0.0 68,083 + +0.0 68,084 - +0.0 68,084 - +0.0 68,089 + +0.0 68,089 + +0.0 68,090 - +0.0 68,090 - -2.9 68,090 - -3.5 68,090 - +0.0 68,104 + -5.8 68,105 - +0.0 68,105 - -2.3 68,105 - +0.0 68,105 - +0.0 68,105 - -2.2 68,136 - -2.1 68,136 - +0.0 68,136 - -3.4 68,136 - -2.7 68,136 - -2.0 68,150 - +0.0 68,170 - -4.7 68,240 + +0.0 68,241 - +0.0 68,259 - +0.0 68,398 - Pf1N1B4_5318 0.81 -3.3 68,533 + +0.0 68,534 - +0.0 68,534 - -3.3 68,542 + +0.0 68,543 - +0.0
Or see this region's nucleotide sequence