Experiment: Nitrate reduction, replicate C t3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5282 and Pf1N1B4_5283 are separated by 47 nucleotides Pf1N1B4_5283 and Pf1N1B4_5284 are separated by 327 nucleotides Pf1N1B4_5284 and Pf1N1B4_5285 are separated by 936 nucleotides
Pf1N1B4_5282 - Phage protein, at 36,363 to 36,533
_5282
Pf1N1B4_5283 - hypothetical protein, at 36,581 to 36,943
_5283
Pf1N1B4_5284 - hypothetical protein, at 37,271 to 37,441
_5284
Pf1N1B4_5285 - hypothetical protein, at 38,378 to 38,617
_5285
Position (kb) 37
38 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 36.341 kb on + strand at 36.341 kb on + strand at 36.341 kb on + strand at 36.341 kb on + strand at 36.341 kb on + strand at 36.341 kb on + strand at 36.341 kb on + strand at 36.342 kb on - strand at 36.342 kb on - strand at 36.342 kb on - strand at 36.342 kb on - strand at 36.389 kb on - strand, within Pf1N1B4_5282 at 36.417 kb on + strand, within Pf1N1B4_5282 at 36.417 kb on + strand at 36.417 kb on + strand, within Pf1N1B4_5282 at 36.417 kb on + strand, within Pf1N1B4_5282 at 36.446 kb on + strand, within Pf1N1B4_5282 at 36.446 kb on + strand, within Pf1N1B4_5282 at 36.446 kb on + strand, within Pf1N1B4_5282 at 36.447 kb on - strand, within Pf1N1B4_5282 at 36.447 kb on - strand, within Pf1N1B4_5282 at 36.531 kb on + strand at 36.633 kb on - strand at 36.635 kb on + strand, within Pf1N1B4_5283 at 36.635 kb on + strand, within Pf1N1B4_5283 at 36.635 kb on + strand, within Pf1N1B4_5283 at 36.635 kb on + strand, within Pf1N1B4_5283 at 36.890 kb on - strand, within Pf1N1B4_5283 at 36.941 kb on + strand at 36.941 kb on + strand at 36.942 kb on - strand at 36.942 kb on - strand at 36.960 kb on + strand at 36.961 kb on - strand at 37.001 kb on + strand at 37.001 kb on + strand at 37.001 kb on + strand at 37.052 kb on - strand at 37.079 kb on + strand at 37.080 kb on - strand at 37.080 kb on - strand at 37.170 kb on + strand at 37.171 kb on - strand at 37.198 kb on + strand at 37.199 kb on - strand at 37.201 kb on + strand at 37.201 kb on + strand at 37.201 kb on + strand at 37.202 kb on - strand at 37.202 kb on - strand at 37.202 kb on - strand at 37.202 kb on - strand at 37.248 kb on - strand at 37.295 kb on + strand, within Pf1N1B4_5284 at 37.316 kb on + strand, within Pf1N1B4_5284 at 37.356 kb on + strand, within Pf1N1B4_5284 at 37.356 kb on + strand, within Pf1N1B4_5284 at 37.357 kb on - strand, within Pf1N1B4_5284 at 37.368 kb on + strand, within Pf1N1B4_5284 at 37.369 kb on - strand at 37.369 kb on - strand, within Pf1N1B4_5284 at 37.476 kb on - strand at 37.484 kb on - strand at 37.519 kb on - strand at 37.535 kb on + strand at 37.536 kb on - strand at 37.552 kb on + strand at 37.599 kb on + strand at 37.599 kb on + strand at 37.599 kb on + strand at 37.600 kb on - strand at 37.600 kb on - strand at 37.686 kb on + strand at 37.687 kb on - strand at 37.714 kb on - strand at 37.765 kb on + strand at 37.766 kb on - strand at 37.766 kb on - strand at 37.796 kb on + strand at 37.796 kb on + strand at 37.797 kb on - strand at 37.817 kb on + strand at 37.817 kb on + strand at 37.818 kb on - strand at 37.821 kb on + strand at 37.822 kb on - strand at 37.822 kb on - strand at 37.837 kb on + strand at 37.837 kb on + strand at 37.837 kb on + strand at 37.837 kb on + strand at 37.838 kb on - strand at 37.878 kb on + strand at 37.878 kb on + strand at 37.878 kb on + strand at 37.878 kb on + strand at 37.878 kb on + strand at 37.879 kb on - strand at 37.883 kb on + strand at 37.895 kb on + strand at 37.896 kb on - strand at 37.901 kb on + strand at 37.901 kb on + strand at 37.902 kb on - strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.903 kb on + strand at 37.904 kb on - strand at 37.904 kb on - strand at 37.904 kb on - strand at 37.904 kb on - strand at 37.904 kb on - strand at 37.904 kb on - strand at 37.938 kb on + strand at 37.938 kb on + strand at 37.938 kb on + strand at 37.938 kb on + strand at 37.984 kb on + strand at 37.984 kb on + strand at 38.056 kb on + strand at 38.163 kb on + strand at 38.163 kb on + strand at 38.163 kb on + strand at 38.163 kb on + strand at 38.164 kb on - strand at 38.164 kb on - strand at 38.167 kb on + strand at 38.167 kb on + strand at 38.168 kb on - strand at 38.168 kb on - strand at 38.208 kb on + strand at 38.221 kb on + strand at 38.221 kb on + strand at 38.221 kb on + strand at 38.221 kb on + strand at 38.221 kb on + strand at 38.221 kb on + strand at 38.221 kb on + strand at 38.221 kb on + strand at 38.222 kb on - strand at 38.222 kb on - strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.223 kb on + strand at 38.224 kb on - strand at 38.224 kb on - strand at 38.224 kb on - strand at 38.227 kb on + strand at 38.227 kb on + strand at 38.227 kb on + strand at 38.227 kb on + strand at 38.227 kb on + strand at 38.227 kb on + strand at 38.227 kb on + strand at 38.227 kb on + strand at 38.228 kb on - strand at 38.239 kb on + strand at 38.279 kb on + strand at 38.279 kb on + strand at 38.279 kb on + strand at 38.279 kb on + strand at 38.279 kb on + strand at 38.279 kb on + strand at 38.279 kb on + strand at 38.280 kb on - strand at 38.290 kb on + strand at 38.290 kb on + strand at 38.290 kb on + strand at 38.291 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t3 remove 36,341 + -2.2 36,341 + +0.0 36,341 + +0.0 36,341 + +0.0 36,341 + -3.0 36,341 + +0.0 36,341 + +0.0 36,342 - -1.4 36,342 - -2.1 36,342 - -2.1 36,342 - +0.0 36,389 - Pf1N1B4_5282 0.15 +0.0 36,417 + Pf1N1B4_5282 0.32 +0.0 36,417 + +0.0 36,417 + Pf1N1B4_5282 0.32 +0.0 36,417 + Pf1N1B4_5282 0.32 +0.0 36,446 + Pf1N1B4_5282 0.49 -3.0 36,446 + Pf1N1B4_5282 0.49 -1.7 36,446 + Pf1N1B4_5282 0.49 +0.0 36,447 - Pf1N1B4_5282 0.49 +0.0 36,447 - Pf1N1B4_5282 0.49 -2.4 36,531 + +0.0 36,633 - -1.9 36,635 + Pf1N1B4_5283 0.15 -3.0 36,635 + Pf1N1B4_5283 0.15 +0.0 36,635 + Pf1N1B4_5283 0.15 +0.0 36,635 + Pf1N1B4_5283 0.15 +0.0 36,890 - Pf1N1B4_5283 0.85 -2.8 36,941 + +0.0 36,941 + -2.2 36,942 - -2.9 36,942 - +0.0 36,960 + -2.2 36,961 - +0.0 37,001 + -2.0 37,001 + +0.0 37,001 + +0.0 37,052 - +0.0 37,079 + -2.0 37,080 - +0.0 37,080 - -1.6 37,170 + +0.0 37,171 - -4.0 37,198 + +0.0 37,199 - -2.0 37,201 + +0.0 37,201 + +0.0 37,201 + -3.0 37,202 - +0.0 37,202 - +0.0 37,202 - +0.0 37,202 - -3.3 37,248 - +0.0 37,295 + Pf1N1B4_5284 0.14 +0.7 37,316 + Pf1N1B4_5284 0.26 -1.5 37,356 + Pf1N1B4_5284 0.50 +0.0 37,356 + Pf1N1B4_5284 0.50 +0.0 37,357 - Pf1N1B4_5284 0.50 +0.0 37,368 + Pf1N1B4_5284 0.57 +0.0 37,369 - -2.8 37,369 - Pf1N1B4_5284 0.57 +0.0 37,476 - -2.2 37,484 - -3.0 37,519 - -2.3 37,535 + -1.1 37,536 - +0.0 37,552 + +0.0 37,599 + +0.0 37,599 + +0.0 37,599 + +0.0 37,600 - +0.0 37,600 - -3.1 37,686 + -1.0 37,687 - +0.0 37,714 - +0.0 37,765 + -2.9 37,766 - -2.1 37,766 - -3.1 37,796 + +0.0 37,796 + +0.0 37,797 - +0.0 37,817 + -2.9 37,817 + +0.0 37,818 - +0.0 37,821 + +0.0 37,822 - -3.0 37,822 - +0.0 37,837 + +0.0 37,837 + +0.0 37,837 + +0.0 37,837 + +0.0 37,838 - -2.9 37,878 + +0.0 37,878 + -1.1 37,878 + -1.6 37,878 + +0.0 37,878 + +0.0 37,879 - +0.0 37,883 + -3.0 37,895 + -2.9 37,896 - +0.0 37,901 + +0.0 37,901 + +0.0 37,902 - +0.0 37,903 + +0.0 37,903 + -4.3 37,903 + +0.0 37,903 + +0.0 37,903 + +0.0 37,903 + +0.0 37,903 + -2.1 37,903 + -4.9 37,903 + -2.1 37,903 + -2.1 37,903 + -1.6 37,903 + +0.0 37,903 + -2.9 37,903 + +0.0 37,903 + +0.3 37,903 + +0.0 37,904 - +0.0 37,904 - -3.6 37,904 - +0.0 37,904 - -4.5 37,904 - -2.0 37,904 - +0.0 37,938 + -4.3 37,938 + +0.0 37,938 + +0.0 37,938 + -1.0 37,984 + -3.2 37,984 + +0.0 38,056 + +0.0 38,163 + +0.0 38,163 + -4.7 38,163 + -2.7 38,163 + -2.8 38,164 - -3.7 38,164 - +0.0 38,167 + +0.0 38,167 + -3.4 38,168 - +0.0 38,168 - +0.0 38,208 + +0.0 38,221 + +0.0 38,221 + +0.0 38,221 + +0.0 38,221 + -1.9 38,221 + +0.0 38,221 + +0.0 38,221 + -3.3 38,221 + +0.0 38,222 - +0.0 38,222 - -4.6 38,223 + +0.0 38,223 + -4.5 38,223 + +0.0 38,223 + -4.1 38,223 + +0.0 38,223 + +0.0 38,223 + -2.0 38,223 + +0.0 38,223 + +0.0 38,223 + +0.0 38,223 + +0.0 38,223 + +0.0 38,223 + -2.1 38,223 + +0.0 38,224 - -2.6 38,224 - +0.0 38,224 - -2.9 38,227 + +0.0 38,227 + +0.0 38,227 + +0.0 38,227 + -2.5 38,227 + +0.0 38,227 + +0.0 38,227 + +0.0 38,227 + +0.0 38,228 - -1.8 38,239 + +0.0 38,279 + +0.0 38,279 + -2.5 38,279 + +0.0 38,279 + -3.6 38,279 + -2.8 38,279 + -3.1 38,279 + -2.2 38,280 - -1.8 38,290 + -1.9 38,290 + -1.0 38,290 + +0.0 38,291 - +0.0
Or see this region's nucleotide sequence