Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3093

Experiment: Nitrate reduction, replicate C t3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3092 and Pf1N1B4_3093 are separated by 45 nucleotidesPf1N1B4_3093 and Pf1N1B4_3094 are separated by 3 nucleotides Pf1N1B4_3092 - Outer membrane protein assembly factor YaeT precursor, at 3,475,286 to 3,477,676 _3092 Pf1N1B4_3093 - Outer membrane protein H precursor, at 3,477,722 to 3,478,225 _3093 Pf1N1B4_3094 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191), at 3,478,229 to 3,479,284 _3094 Position (kb) 3477 3478 3479Strain fitness (log2 ratio) -3 -2 -1 0 1at 3477.674 kb on + strandat 3477.674 kb on + strandat 3477.674 kb on + strandat 3477.692 kb on + strandat 3477.809 kb on + strand, within Pf1N1B4_3093at 3477.848 kb on + strand, within Pf1N1B4_3093at 3478.223 kb on + strandat 3478.223 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t3
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3,477,674 + -0.0
3,477,674 + -3.0
3,477,674 + -2.3
3,477,692 + -0.0
3,477,809 + Pf1N1B4_3093 0.17 -0.7
3,477,848 + Pf1N1B4_3093 0.25 -1.1
3,478,223 + -0.0
3,478,223 + -1.0

Or see this region's nucleotide sequence