Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2911

Experiment: Nitrate reduction, replicate C t3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t3
3,267,169	-		Pf1N1B4_2910	0.49	-0.0
3,267,256	+		Pf1N1B4_2910	0.56	-1.5
3,267,285	+		Pf1N1B4_2910	0.59	-0.0
3,267,285	+		Pf1N1B4_2910	0.59	-0.0
3,267,285	+		Pf1N1B4_2910	0.59	-4.6
3,267,285	+		Pf1N1B4_2910	0.59	-0.0
3,267,285	+				-3.3
3,267,286	-		Pf1N1B4_2910	0.59	-0.0
3,267,286	-				-1.8
3,267,291	+		Pf1N1B4_2910	0.59	-0.0
3,267,291	+		Pf1N1B4_2910	0.59	-0.0
3,267,291	+		Pf1N1B4_2910	0.59	-0.0
3,267,291	+		Pf1N1B4_2910	0.59	-0.0
3,267,292	-		Pf1N1B4_2910	0.59	-1.9
3,267,292	-		Pf1N1B4_2910	0.59	-0.0
3,267,292	-		Pf1N1B4_2910	0.59	-3.0
3,267,312	+		Pf1N1B4_2910	0.61	-0.0
3,267,312	+				-1.9
3,267,313	-		Pf1N1B4_2910	0.61	-2.7
3,267,313	-		Pf1N1B4_2910	0.61	-0.0
3,267,325	-		Pf1N1B4_2910	0.62	-0.0
3,267,325	-		Pf1N1B4_2910	0.62	-2.6
3,267,582	+				-0.0
3,267,582	+		Pf1N1B4_2910	0.83	-1.9
3,267,582	+				-0.0
3,267,582	+		Pf1N1B4_2910	0.83	-1.8
3,267,582	+		Pf1N1B4_2910	0.83	-2.4
3,267,583	-		Pf1N1B4_2910	0.83	-4.7
3,267,583	-		Pf1N1B4_2910	0.83	-3.3
3,267,583	-		Pf1N1B4_2910	0.83	-2.1
3,267,583	-		Pf1N1B4_2910	0.83	-0.0
3,267,673	+				-0.0
3,267,673	+				-2.1
3,267,673	+				-0.0
3,267,674	-				-0.0
3,267,708	+				-1.9
3,267,708	+				-0.0
3,267,708	+				-0.0
3,267,708	+				-0.0
3,267,708	+				-0.0
3,267,708	+				-0.0
3,267,708	+				-0.0
3,267,708	+				-0.0
3,267,709	-				-1.8
3,267,709	-				-0.0
3,267,709	-				-0.0
3,267,709	-				-3.2
3,267,709	-				-3.0
3,267,714	+				-0.0
3,267,714	+				-4.4
3,267,714	+				-0.0
3,267,714	+				-0.0
3,267,714	+				-0.0
3,267,715	-				-3.3
3,267,715	-				-0.0
3,267,818	+				-0.0
3,267,818	+				-3.1
3,267,818	+				-0.0
3,267,818	+				-0.0
3,267,818	+				-0.0
3,267,818	+				-0.0
3,267,818	+				-3.7
3,267,818	+				-0.0
3,267,818	+				-0.0
3,267,819	-				-0.0
3,267,819	-				-3.4
3,267,819	-				-0.0
3,267,819	-				-0.0
3,267,819	-				-0.0
3,267,819	-				-2.4
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-1.0
3,267,820	+				-0.0
3,267,820	+				-2.7
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-1.4
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-3.2
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-1.4
3,267,820	+				-0.0
3,267,820	+				-1.8
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-1.7
3,267,820	+				-3.6
3,267,820	+				-1.8
3,267,820	+				-0.0
3,267,820	+				-4.3
3,267,820	+				-0.0
3,267,820	+				-2.9
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-5.7
3,267,820	+				-1.5
3,267,820	+				-0.0
3,267,820	+				-2.4
3,267,820	+				-2.7
3,267,820	+				-0.0
3,267,820	+				-2.3
3,267,820	+				-0.0
3,267,820	+				-2.4
3,267,820	+				-3.5
3,267,820	+				-3.2
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,820	+				-0.0
3,267,821	-				-2.4
3,267,821	-				-1.0
3,267,821	-				-3.2
3,267,821	-				-0.0
3,267,821	-				-2.5
3,267,821	-				-0.0
3,267,821	-				-0.0
3,267,821	-				-0.0
3,267,821	-				-3.0
3,267,821	-				-4.0
3,267,821	-				-0.0
3,267,821	-				-2.6
3,267,821	-				-0.0
3,267,821	-				-1.4
3,267,821	-				-0.0
3,267,821	-				-0.0
3,267,821	-				-0.0
3,267,821	-				-3.8
3,267,821	-				-0.0
3,267,821	-				-1.9
3,267,821	-				-2.4
3,267,821	-				-1.5
3,267,821	-				-0.0
3,267,821	-				-2.6
3,267,821	-				-1.5
3,267,821	-				-0.0
3,267,821	-				-0.0
3,267,821	-				-0.0
3,267,821	-				-3.8
3,267,821	-				-0.0
3,267,821	-				-0.0
3,267,821	-				-3.1
3,267,821	-				-3.2
3,267,821	-				-0.0
3,267,821	-				-0.0
3,267,824	+				-0.0
3,267,824	+				-2.0
3,267,824	+				-0.0
3,267,824	+				-0.0
3,267,824	+				-0.0
3,267,824	+				-0.0
3,267,824	+				-0.0
3,267,824	+				-1.6
3,267,824	+				-0.0
3,267,824	+				-0.0
3,267,824	+				-0.0
3,267,825	-				-3.5
3,267,825	-				-2.4
3,267,825	-				-0.0
3,267,862	+				-1.4
3,267,862	+				-0.0
3,267,862	+				-0.0
3,267,863	-				-0.0
3,267,863	-				-0.0
3,267,863	-				-0.0
3,267,867	+				-3.2
3,267,867	+				-0.0
3,267,867	+				-3.0
3,267,868	-				-0.0
3,267,938	-		Pf1N1B4_2911	0.14	-0.0
3,267,938	-		Pf1N1B4_2911	0.14	-1.8
3,268,030	+		Pf1N1B4_2911	0.23	-0.0
3,268,030	+		Pf1N1B4_2911	0.23	-3.2
3,268,031	-		Pf1N1B4_2911	0.23	-1.7
3,268,031	-		Pf1N1B4_2911	0.23	-0.0
3,268,031	-		Pf1N1B4_2911	0.23	-3.5
3,268,031	-		Pf1N1B4_2911	0.23	-0.0
3,268,094	+		Pf1N1B4_2911	0.29	-3.4
3,268,094	+				-2.5
3,268,113	+		Pf1N1B4_2911	0.31	-0.0
3,268,113	+		Pf1N1B4_2911	0.31	-0.0
3,268,114	-		Pf1N1B4_2911	0.31	-1.9
3,268,114	-		Pf1N1B4_2911	0.31	-2.6
3,268,114	-		Pf1N1B4_2911	0.31	-2.6
3,268,154	+		Pf1N1B4_2911	0.35	-1.9
3,268,243	+		Pf1N1B4_2911	0.44	-0.0
3,268,281	+		Pf1N1B4_2911	0.47	-1.3
3,268,281	+		Pf1N1B4_2911	0.47	-0.0
3,268,282	-		Pf1N1B4_2911	0.47	-1.6
3,268,304	-		Pf1N1B4_2911	0.50	-3.7
3,268,318	+		Pf1N1B4_2911	0.51	-3.8
3,268,318	+				-3.0
3,268,318	+		Pf1N1B4_2911	0.51	-0.0
3,268,319	-		Pf1N1B4_2911	0.51	-2.2
3,268,319	-		Pf1N1B4_2911	0.51	-2.9
3,268,319	-		Pf1N1B4_2911	0.51	-0.0
3,268,319	-		Pf1N1B4_2911	0.51	-0.0
3,268,346	+		Pf1N1B4_2911	0.54	-1.0
3,268,346	+		Pf1N1B4_2911	0.54	-1.0
3,268,347	-		Pf1N1B4_2911	0.54	-3.4
3,268,352	-		Pf1N1B4_2911	0.54	-0.0
3,268,352	-		Pf1N1B4_2911	0.54	-0.0
3,268,352	-				-2.5
3,268,352	-		Pf1N1B4_2911	0.54	-0.0
3,268,352	-		Pf1N1B4_2911	0.54	-1.1
3,268,472	+		Pf1N1B4_2911	0.66	-4.1
3,268,472	+		Pf1N1B4_2911	0.66	-0.0
3,268,472	+		Pf1N1B4_2911	0.66	-0.0
3,268,489	+		Pf1N1B4_2911	0.68	-0.0
3,268,489	+		Pf1N1B4_2911	0.68	-0.0
3,268,490	-		Pf1N1B4_2911	0.68	-0.0
3,268,609	-		Pf1N1B4_2911	0.80	-1.1
3,268,648	+		Pf1N1B4_2911	0.84	-0.0
3,268,648	+		Pf1N1B4_2911	0.84	-1.7
3,268,648	+		Pf1N1B4_2911	0.84	-0.0
3,268,648	+		Pf1N1B4_2911	0.84	-0.0
3,268,648	+		Pf1N1B4_2911	0.84	-0.0
3,268,648	+		Pf1N1B4_2911	0.84	-0.0
3,268,648	+		Pf1N1B4_2911	0.84	-2.4
3,268,648	+		Pf1N1B4_2911	0.84	-0.0
3,268,648	+				-2.9
3,268,648	+		Pf1N1B4_2911	0.84	-0.0
3,268,648	+		Pf1N1B4_2911	0.84	-0.0
3,268,649	-		Pf1N1B4_2911	0.84	-3.2
3,268,649	-		Pf1N1B4_2911	0.84	-0.0
3,268,649	-		Pf1N1B4_2911	0.84	-0.0
3,268,649	-		Pf1N1B4_2911	0.84	-0.0
3,268,649	-		Pf1N1B4_2911	0.84	-0.0
3,268,649	-		Pf1N1B4_2911	0.84	-0.0
3,268,649	-				-0.0
3,268,714	+				-1.6
3,268,714	+				-2.4
3,268,715	-				-0.0
3,268,715	-				-3.2
3,268,715	-				-2.7
3,268,715	-				-0.0
3,268,849	+				-0.0
3,268,968	+				-0.0
3,268,969	-				-1.8
3,269,080	+				-0.0
3,269,094	+				-3.6
3,269,094	+				-0.0
3,269,094	+				-3.1
3,269,094	+				-3.9
3,269,095	-				-3.4
3,269,114	+				-0.0
3,269,114	+				-0.0
3,269,114	+				-0.0
3,269,115	-				-0.0
3,269,115	-				-1.3
3,269,115	-				-2.7
3,269,115	-				-0.0
3,269,115	-				-2.4
3,269,115	-				-2.2
3,269,115	-				-0.0
3,269,115	-				-0.0
3,269,115	-				-0.0
3,269,115	-				-0.0
3,269,115	-				-0.0
3,269,115	-				-4.9
3,269,115	-				-3.4
3,269,158	-				-0.0
3,269,158	-				-0.0
3,269,215	-				-0.0
3,269,595	+		Pf1N1B4_2912	0.44	-0.0
3,269,596	-		Pf1N1B4_2912	0.44	-2.1
3,269,596	-		Pf1N1B4_2912	0.44	-0.0
3,269,596	-		Pf1N1B4_2912	0.44	-1.1
3,269,596	-				-2.1
3,269,596	-		Pf1N1B4_2912	0.44	-0.0