Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2861

Experiment: Nitrate reduction, replicate C t3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t3
3,208,670	+		Pf1N1B4_2859	0.79	+0.0
3,208,670	+		Pf1N1B4_2859	0.79	-1.0
3,208,671	-		Pf1N1B4_2859	0.79	+0.0
3,208,671	-		Pf1N1B4_2859	0.79	-1.6
3,208,671	-		Pf1N1B4_2859	0.79	+0.0
3,208,679	+		Pf1N1B4_2859	0.79	+0.0
3,208,680	-		Pf1N1B4_2859	0.79	-3.2
3,208,680	-		Pf1N1B4_2859	0.79	+0.0
3,208,803	+		Pf1N1B4_2859	0.83	+0.0
3,209,000	+				-1.4
3,209,000	+				+0.0
3,209,000	+				-0.9
3,209,001	-				+0.0
3,209,001	-				-1.0
3,209,072	+				-1.6
3,209,072	+				+0.0
3,209,072	+				+0.0
3,209,072	+				+0.0
3,209,072	+				+0.0
3,209,102	+				+0.0
3,209,103	-				-1.8
3,209,144	+				+0.0
3,209,145	-				-2.2
3,209,145	-				+0.0
3,209,145	-				-2.6
3,209,165	+				+0.0
3,209,165	+				-2.3
3,209,165	+				+0.0
3,209,165	+				+0.0
3,209,165	+				+0.0
3,209,165	+				-2.8
3,209,165	+				+0.0
3,209,165	+				-0.6
3,209,166	-				+0.0
3,209,166	-				+0.0
3,209,166	-				+0.0
3,209,166	-				+0.0
3,209,166	-				+0.0
3,209,246	+				+0.0
3,209,349	+		Pf1N1B4_2860	0.40	-3.2
3,209,349	+		Pf1N1B4_2860	0.40	-5.0
3,209,349	+		Pf1N1B4_2860	0.40	+0.0
3,209,349	+		Pf1N1B4_2860	0.40	+0.0
3,209,349	+		Pf1N1B4_2860	0.40	-4.2
3,209,349	+		Pf1N1B4_2860	0.40	+0.0
3,209,349	+		Pf1N1B4_2860	0.40	+0.0
3,209,349	+		Pf1N1B4_2860	0.40	-2.4
3,209,349	+		Pf1N1B4_2860	0.40	+0.0
3,209,349	+		Pf1N1B4_2860	0.40	-1.9
3,209,349	+		Pf1N1B4_2860	0.40	+0.0
3,209,349	+		Pf1N1B4_2860	0.40	+0.0
3,209,350	-		Pf1N1B4_2860	0.40	+0.0
3,209,350	-		Pf1N1B4_2860	0.40	+0.0
3,209,350	-		Pf1N1B4_2860	0.40	+0.0
3,209,350	-		Pf1N1B4_2860	0.40	-4.7
3,209,350	-		Pf1N1B4_2860	0.40	+0.0
3,209,350	-		Pf1N1B4_2860	0.40	+0.0
3,209,412	+		Pf1N1B4_2860	0.75	+0.0
3,209,412	+		Pf1N1B4_2860	0.75	+0.0
3,209,412	+		Pf1N1B4_2860	0.75	+0.0
3,209,412	+		Pf1N1B4_2860	0.75	-3.5
3,209,412	+		Pf1N1B4_2860	0.75	+0.0
3,209,412	+		Pf1N1B4_2860	0.75	+0.0
3,209,412	+		Pf1N1B4_2860	0.75	-5.1
3,209,412	+		Pf1N1B4_2860	0.75	-4.6
3,209,412	+		Pf1N1B4_2860	0.75	+0.0
3,209,412	+		Pf1N1B4_2860	0.75	-3.3
3,209,412	+		Pf1N1B4_2860	0.75	-2.7
3,209,412	+		Pf1N1B4_2860	0.75	+0.0
3,209,412	+		Pf1N1B4_2860	0.75	+0.0
3,209,412	+		Pf1N1B4_2860	0.75	+0.0
3,209,412	+				-2.9
3,209,423	+		Pf1N1B4_2860	0.81	-2.1
3,209,423	+		Pf1N1B4_2860	0.81	-1.6
3,209,445	+				-1.4
3,209,445	+				+0.0
3,209,445	+				-2.6
3,209,445	+				-3.1
3,209,445	+				+0.0
3,209,445	+				+0.0
3,209,445	+				+0.0
3,209,445	+				+0.0
3,209,445	+				-1.6
3,209,445	+				+0.0
3,209,445	+				-2.8
3,209,445	+				-2.1
3,209,445	+				-4.6
3,209,445	+				-1.6
3,209,445	+				+0.0
3,209,445	+				+0.0
3,209,446	-				+0.0
3,209,446	-				-1.6
3,209,451	+				-2.0
3,209,451	+				-3.9
3,209,451	+				-2.3
3,209,451	+				+0.0
3,209,451	+				-3.5
3,209,451	+				+0.0
3,209,451	+				+0.0
3,209,451	+				-3.3
3,209,451	+				-2.7
3,209,451	+				-4.2
3,209,451	+				-3.1
3,209,451	+				+0.0
3,209,451	+				-1.9
3,209,451	+				-0.3
3,209,451	+				-2.0
3,209,451	+				-1.3
3,209,451	+				-2.0
3,209,451	+				-1.0
3,209,451	+				-4.1
3,209,451	+				-2.7
3,209,451	+				+0.0
3,209,451	+				-2.1
3,209,451	+				+0.0
3,209,451	+				+0.0
3,209,451	+				-2.0
3,209,451	+				-4.0
3,209,451	+				+0.0
3,209,451	+				+0.0
3,209,451	+				+0.0
3,209,451	+				-3.8
3,209,451	+				+0.0
3,209,451	+				+0.0
3,209,451	+				+0.0
3,209,451	+				+0.0
3,209,451	+				+0.0
3,209,451	+				-3.2
3,209,451	+				+0.0
3,209,451	+				+0.0
3,209,451	+				+0.0
3,209,451	+				-2.7
3,209,452	-				-3.5
3,209,452	-				-3.6
3,209,452	-				+0.0
3,209,452	-				+0.0
3,209,452	-				+0.0
3,209,452	-				+0.0
3,209,452	-				+0.0
3,209,452	-				+0.0
3,209,452	-				-2.1
3,209,452	-				-4.1
3,209,452	-				+0.0
3,209,452	-				+0.0
3,209,472	+				+0.0
3,209,680	+		Pf1N1B4_2861	0.16	+0.5
3,209,813	+		Pf1N1B4_2861	0.31	+0.0
3,209,813	+		Pf1N1B4_2861	0.31	-0.4
3,209,907	-		Pf1N1B4_2861	0.42	-5.4
3,210,002	+		Pf1N1B4_2861	0.52	+0.0
3,210,002	+		Pf1N1B4_2861	0.52	+0.0
3,210,002	+		Pf1N1B4_2861	0.52	+0.0
3,210,077	+		Pf1N1B4_2861	0.61	+0.0
3,210,077	+		Pf1N1B4_2861	0.61	-0.5
3,210,077	+		Pf1N1B4_2861	0.61	+0.0
3,210,077	+		Pf1N1B4_2861	0.61	+0.0
3,210,077	+				+0.0
3,210,167	+		Pf1N1B4_2861	0.71	-0.5
3,210,167	+		Pf1N1B4_2861	0.71	+0.0
3,210,168	-		Pf1N1B4_2861	0.71	+0.0
3,210,168	-		Pf1N1B4_2861	0.71	-2.3
3,210,367	+				+0.0
3,210,368	-				+0.0
3,210,368	-				+0.0
3,210,368	-				+0.0
3,210,385	-				+0.0
3,210,404	+				+0.4
3,210,429	+				+0.0
3,210,429	+				+0.0
3,210,430	-				-5.5
3,210,441	+				-0.7
3,210,441	+				+0.0
3,210,441	+				-0.8
3,210,441	+				+0.0
3,210,441	+				+0.0
3,210,441	+				-3.1
3,210,441	+				-1.2
3,210,441	+				+0.0
3,210,441	+				-1.0
3,210,441	+				+0.0
3,210,441	+				-1.6
3,210,441	+				-1.4
3,210,442	-				+0.0
3,210,442	-				-4.6
3,210,442	-				+0.0
3,210,442	-				+0.0
3,210,513	+				+0.0
3,210,638	+				+0.0
3,210,639	-				+0.0
3,210,639	-				-0.1
3,210,639	-				+0.0
3,210,639	-				+0.0
3,210,639	-				+0.0
3,211,102	-				+0.0
3,211,102	-				-3.6
3,211,102	-				+0.0
3,211,275	+				+0.0
3,211,275	+				+0.0
3,211,284	+				+0.0
3,211,285	-				+0.0
3,211,301	+				+0.0
3,211,301	+				-1.4
3,211,302	-				+0.0
3,211,302	-				-2.4
3,211,328	+				+0.0
3,211,328	+				-1.7
3,211,328	+				+0.0
3,211,328	+				+0.0
3,211,329	-				-3.8
3,211,329	-				+0.0
3,211,329	-				+0.0
3,211,329	-				+0.0
3,211,329	-				+0.0
3,211,329	-				-1.0
3,211,329	-				-2.6
3,211,329	-				+0.0
3,211,329	-				+0.0
3,211,329	-				-2.7
3,211,329	-				-3.2
3,211,330	+				+0.0
3,211,330	+				+0.0
3,211,330	+				-2.4
3,211,331	-				+0.0
3,211,331	-				+0.0
3,211,331	-				-3.7
3,211,331	-				+0.0
3,211,348	+				+0.0
3,211,348	+				-2.5
3,211,348	+				+0.0
3,211,349	-				-2.3
3,211,376	+				+0.0
3,211,377	-				+0.0
3,211,400	+				+0.0
3,211,401	-				-1.0
3,211,401	-				-2.1
3,211,401	-				+0.0
3,211,401	-				+0.0
3,211,401	-				+0.0
3,211,401	-				+0.0
3,211,401	-				-3.5
3,211,424	+				-3.5
3,211,425	-				-2.6
3,211,425	-				+0.0
3,211,425	-				-1.3