Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2555

Experiment: Nitrate reduction, replicate C t3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t3
2,896,851	+				-3.5
2,896,852	-				-2.5
2,896,852	-				-0.0
2,896,955	+				-0.0
2,896,955	+				-0.0
2,897,046	+		Pf1N1B4_2554	0.13	-3.0
2,897,046	+		Pf1N1B4_2554	0.13	-0.0
2,897,046	+		Pf1N1B4_2554	0.13	-3.1
2,897,047	-		Pf1N1B4_2554	0.13	-0.0
2,897,047	-		Pf1N1B4_2554	0.13	-0.0
2,897,047	-				-0.0
2,897,057	+		Pf1N1B4_2554	0.16	-3.4
2,897,058	-		Pf1N1B4_2554	0.17	-0.0
2,897,058	-				-3.3
2,897,058	-		Pf1N1B4_2554	0.17	-0.0
2,897,154	+		Pf1N1B4_2554	0.45	-2.3
2,897,154	+		Pf1N1B4_2554	0.45	-2.9
2,897,155	-		Pf1N1B4_2554	0.45	-0.0
2,897,173	-		Pf1N1B4_2554	0.50	-0.0
2,897,222	-		Pf1N1B4_2554	0.65	-0.0
2,897,234	-		Pf1N1B4_2554	0.68	-3.7
2,897,269	+		Pf1N1B4_2554	0.79	-2.8
2,897,285	+		Pf1N1B4_2554	0.83	-1.3
2,897,285	+		Pf1N1B4_2554	0.83	-2.7
2,897,285	+		Pf1N1B4_2554	0.83	-0.0
2,897,285	+		Pf1N1B4_2554	0.83	-2.8
2,897,285	+		Pf1N1B4_2554	0.83	-2.5
2,897,285	+		Pf1N1B4_2554	0.83	-0.0
2,897,285	+		Pf1N1B4_2554	0.83	-0.0
2,897,286	-		Pf1N1B4_2554	0.84	-0.0
2,897,286	-		Pf1N1B4_2554	0.84	-0.0
2,897,286	-		Pf1N1B4_2554	0.84	-0.0
2,897,286	-		Pf1N1B4_2554	0.84	-0.0
2,897,317	-				-0.0
2,897,317	-				-0.0
2,897,334	+				-0.0
2,897,377	-				-2.6
2,897,387	+				-1.8
2,897,436	+				-0.0
2,897,437	-				-0.0
2,897,437	-				-0.0
2,897,437	-				-0.0
2,897,437	-				-3.8
2,897,533	+		Pf1N1B4_2555	0.14	-3.0
2,897,533	+				-0.0
2,897,534	-		Pf1N1B4_2555	0.14	-0.0
2,897,534	-		Pf1N1B4_2555	0.14	-2.4
2,897,568	+		Pf1N1B4_2555	0.18	-0.0
2,897,568	+		Pf1N1B4_2555	0.18	-0.0
2,897,568	+		Pf1N1B4_2555	0.18	-2.9
2,897,568	+		Pf1N1B4_2555	0.18	-0.0
2,897,568	+		Pf1N1B4_2555	0.18	-2.4
2,897,569	-		Pf1N1B4_2555	0.18	-0.0
2,897,569	-		Pf1N1B4_2555	0.18	-0.0
2,897,569	-		Pf1N1B4_2555	0.18	-0.0
2,897,569	-		Pf1N1B4_2555	0.18	-2.1
2,897,569	-		Pf1N1B4_2555	0.18	-2.2
2,897,739	+		Pf1N1B4_2555	0.39	-0.0
2,897,739	+		Pf1N1B4_2555	0.39	-2.2
2,897,739	+		Pf1N1B4_2555	0.39	-0.0
2,897,739	+		Pf1N1B4_2555	0.39	-0.0
2,897,740	-		Pf1N1B4_2555	0.40	-0.0
2,897,740	-		Pf1N1B4_2555	0.40	-0.0
2,897,755	-				-1.7
2,897,757	+		Pf1N1B4_2555	0.42	-0.0
2,897,757	+		Pf1N1B4_2555	0.42	-2.2
2,897,757	+		Pf1N1B4_2555	0.42	-1.8
2,897,757	+		Pf1N1B4_2555	0.42	-2.2
2,897,757	+		Pf1N1B4_2555	0.42	-0.0
2,897,757	+		Pf1N1B4_2555	0.42	-0.0
2,897,758	-		Pf1N1B4_2555	0.42	-0.0
2,897,758	-		Pf1N1B4_2555	0.42	-0.0
2,897,758	-		Pf1N1B4_2555	0.42	-0.0
2,897,758	-		Pf1N1B4_2555	0.42	-0.0
2,897,758	-		Pf1N1B4_2555	0.42	-0.0
2,897,758	-		Pf1N1B4_2555	0.42	-0.0
2,897,758	-		Pf1N1B4_2555	0.42	-3.3
2,897,758	-		Pf1N1B4_2555	0.42	-0.0
2,897,758	-		Pf1N1B4_2555	0.42	-3.6
2,897,758	-		Pf1N1B4_2555	0.42	-3.1
2,897,758	-		Pf1N1B4_2555	0.42	-3.6
2,898,292	+				-0.0
2,898,292	+				-2.6
2,898,293	-				-2.6
2,898,293	-				-0.0
2,898,401	+		Pf1N1B4_2556	0.13	-0.0
2,898,401	+		Pf1N1B4_2556	0.13	-0.0
2,898,401	+		Pf1N1B4_2556	0.13	-0.0
2,898,401	+		Pf1N1B4_2556	0.13	-0.0
2,898,401	+		Pf1N1B4_2556	0.13	-0.0
2,898,401	+		Pf1N1B4_2556	0.13	-0.4
2,898,401	+		Pf1N1B4_2556	0.13	-0.0
2,898,402	-		Pf1N1B4_2556	0.13	-3.5
2,898,402	-		Pf1N1B4_2556	0.13	-0.0
2,898,402	-		Pf1N1B4_2556	0.13	-0.0
2,898,402	-		Pf1N1B4_2556	0.13	-2.3
2,898,525	+		Pf1N1B4_2556	0.26	-1.0
2,898,583	+		Pf1N1B4_2556	0.32	-0.0
2,898,584	-		Pf1N1B4_2556	0.32	-0.0
2,898,586	+		Pf1N1B4_2556	0.32	-0.0
2,898,586	+		Pf1N1B4_2556	0.32	-2.5
2,898,586	+				-4.8
2,898,586	+		Pf1N1B4_2556	0.32	-0.0
2,898,586	+		Pf1N1B4_2556	0.32	-0.0
2,898,586	+		Pf1N1B4_2556	0.32	-0.0
2,898,587	-		Pf1N1B4_2556	0.32	-2.3
2,898,587	-		Pf1N1B4_2556	0.32	-2.4
2,898,762	+		Pf1N1B4_2556	0.50	-0.0
2,898,935	+		Pf1N1B4_2556	0.68	-0.0
2,898,935	+		Pf1N1B4_2556	0.68	-0.0
2,898,935	+		Pf1N1B4_2556	0.68	-1.0
2,898,936	-		Pf1N1B4_2556	0.68	-2.6
2,898,936	-		Pf1N1B4_2556	0.68	-0.0
2,899,030	+		Pf1N1B4_2556	0.77	-3.2
2,899,030	+		Pf1N1B4_2556	0.77	-3.0
2,899,070	+		Pf1N1B4_2556	0.81	-3.8
2,899,070	+		Pf1N1B4_2556	0.81	-0.0
2,899,070	+		Pf1N1B4_2556	0.81	-0.0
2,899,070	+		Pf1N1B4_2556	0.81	-3.1
2,899,070	+		Pf1N1B4_2556	0.81	-0.0
2,899,070	+		Pf1N1B4_2556	0.81	-0.0
2,899,071	-				-2.7
2,899,071	-		Pf1N1B4_2556	0.81	-0.7
2,899,071	-		Pf1N1B4_2556	0.81	-0.0
2,899,071	-		Pf1N1B4_2556	0.81	-0.0