Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2546

Experiment: Nitrate reduction, replicate C t3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t3
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-4.9
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-4.6
2,888,058	+		Pf1N1B4_2545	0.48	-6.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-4.8
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-5.7
2,888,058	+		Pf1N1B4_2545	0.48	-1.0
2,888,059	-		Pf1N1B4_2545	0.48	-0.0
2,888,059	-		Pf1N1B4_2545	0.48	-5.7
2,888,059	-		Pf1N1B4_2545	0.48	-0.0
2,888,059	-		Pf1N1B4_2545	0.48	-0.0
2,888,059	-		Pf1N1B4_2545	0.48	-0.0
2,888,059	-		Pf1N1B4_2545	0.48	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-5.1
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-4.4
2,888,102	+		Pf1N1B4_2545	0.51	-4.9
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-6.7
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-5.3
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-4.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,139	+		Pf1N1B4_2545	0.53	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-4.2
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-4.9
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-5.2
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-1.6
2,888,172	+		Pf1N1B4_2545	0.55	-6.0
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-5.5
2,888,172	+		Pf1N1B4_2545	0.55	-6.5
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-3.5
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-3.7
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-3.9
2,888,173	-		Pf1N1B4_2545	0.55	-5.5
2,888,173	-		Pf1N1B4_2545	0.55	-5.6
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-5.0
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-4.3
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-6.4
2,888,178	+		Pf1N1B4_2545	0.56	-4.1
2,888,178	+		Pf1N1B4_2545	0.56	-4.9
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-3.7
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-2.5
2,888,179	-		Pf1N1B4_2545	0.56	-4.9
2,888,179	-		Pf1N1B4_2545	0.56	-7.1
2,888,179	-		Pf1N1B4_2545	0.56	-4.1
2,888,179	-		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-5.9
2,888,179	-		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-4.2
2,888,179	-		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-4.5
2,888,179	-		Pf1N1B4_2545	0.56	-4.9
2,888,227	+		Pf1N1B4_2545	0.59	-4.4
2,888,227	+		Pf1N1B4_2545	0.59	-6.8
2,888,228	-		Pf1N1B4_2545	0.59	-4.9
2,888,494	+		Pf1N1B4_2545	0.77	-0.0
2,888,494	+		Pf1N1B4_2545	0.77	-0.0
2,888,494	+		Pf1N1B4_2545	0.77	-0.0
2,888,494	+		Pf1N1B4_2545	0.77	-4.5
2,888,495	-		Pf1N1B4_2545	0.77	-0.0
2,888,619	+		Pf1N1B4_2545	0.85	-0.0
2,888,637	+		Pf1N1B4_2545	0.87	-3.3
2,888,637	+		Pf1N1B4_2545	0.87	-0.0
2,888,845	+				-0.0
2,888,845	+				-0.0
2,888,846	-				-3.2
2,888,955	-				-0.0
2,888,955	-				-0.0
2,888,991	-				-3.7
2,889,005	-				-0.0
2,889,149	+				-0.0
2,889,150	-				-0.0
2,889,150	-				-0.0
2,889,150	-				-0.0
2,889,151	+				-0.0
2,889,164	+				-0.0
2,889,165	-				-2.7
2,889,202	-		Pf1N1B4_2546	0.10	-0.0
2,889,202	-		Pf1N1B4_2546	0.10	-0.0
2,889,202	-		Pf1N1B4_2546	0.10	-3.1
2,889,202	-		Pf1N1B4_2546	0.10	-1.5
2,889,241	+		Pf1N1B4_2546	0.12	-0.0
2,889,241	+		Pf1N1B4_2546	0.12	-0.0
2,889,242	-		Pf1N1B4_2546	0.13	-2.2
2,889,252	+		Pf1N1B4_2546	0.13	-0.0
2,889,253	-		Pf1N1B4_2546	0.13	-0.0
2,889,253	-		Pf1N1B4_2546	0.13	-0.0
2,889,253	-		Pf1N1B4_2546	0.13	-0.0
2,889,253	-		Pf1N1B4_2546	0.13	-0.0
2,889,253	-		Pf1N1B4_2546	0.13	-0.0
2,889,277	+		Pf1N1B4_2546	0.14	-0.0
2,889,278	-		Pf1N1B4_2546	0.14	-0.0
2,889,391	+		Pf1N1B4_2546	0.20	-2.3
2,889,392	-		Pf1N1B4_2546	0.20	-0.0
2,889,448	+		Pf1N1B4_2546	0.23	-0.0
2,889,448	+		Pf1N1B4_2546	0.23	-2.1
2,889,448	+		Pf1N1B4_2546	0.23	-0.0
2,889,449	-		Pf1N1B4_2546	0.23	-0.0
2,889,454	-		Pf1N1B4_2546	0.24	-0.0
2,889,547	+		Pf1N1B4_2546	0.29	-0.0
2,889,547	+		Pf1N1B4_2546	0.29	-2.5
2,889,547	+		Pf1N1B4_2546	0.29	-0.0
2,889,547	+		Pf1N1B4_2546	0.29	-0.0
2,889,548	-		Pf1N1B4_2546	0.29	-0.0
2,889,625	+		Pf1N1B4_2546	0.33	-0.0
2,889,625	+		Pf1N1B4_2546	0.33	-3.7
2,889,625	+		Pf1N1B4_2546	0.33	-2.9
2,889,625	+		Pf1N1B4_2546	0.33	-0.0
2,889,625	+		Pf1N1B4_2546	0.33	-0.0
2,889,625	+		Pf1N1B4_2546	0.33	-0.0
2,889,625	+		Pf1N1B4_2546	0.33	-0.0
2,889,625	+				-1.3
2,889,626	-		Pf1N1B4_2546	0.33	-0.0
2,889,626	-				-0.0
2,889,626	-		Pf1N1B4_2546	0.33	-0.0
2,889,626	-		Pf1N1B4_2546	0.33	-0.0
2,889,626	-		Pf1N1B4_2546	0.33	-1.3
2,889,626	-		Pf1N1B4_2546	0.33	-0.0
2,889,626	-		Pf1N1B4_2546	0.33	-0.0
2,889,626	-		Pf1N1B4_2546	0.33	-2.0
2,889,629	+		Pf1N1B4_2546	0.33	-0.0
2,889,629	+		Pf1N1B4_2546	0.33	-0.0
2,889,630	-		Pf1N1B4_2546	0.33	-0.0
2,889,630	-		Pf1N1B4_2546	0.33	-0.0
2,889,630	-		Pf1N1B4_2546	0.33	-0.0
2,889,640	+		Pf1N1B4_2546	0.33	-0.0
2,889,653	+		Pf1N1B4_2546	0.34	-0.0
2,889,654	-		Pf1N1B4_2546	0.34	-0.0
2,889,679	+		Pf1N1B4_2546	0.35	-0.0
2,889,680	-		Pf1N1B4_2546	0.35	-3.9
2,889,901	-		Pf1N1B4_2546	0.47	-0.0
2,889,901	-		Pf1N1B4_2546	0.47	-0.0
2,889,962	-		Pf1N1B4_2546	0.50	-2.6
2,889,962	-		Pf1N1B4_2546	0.50	-0.0
2,890,018	+		Pf1N1B4_2546	0.53	-0.0
2,890,018	+		Pf1N1B4_2546	0.53	-0.0
2,890,018	+		Pf1N1B4_2546	0.53	-0.0
2,890,018	+		Pf1N1B4_2546	0.53	-1.5
2,890,018	+		Pf1N1B4_2546	0.53	-0.0
2,890,018	+		Pf1N1B4_2546	0.53	-1.6
2,890,019	-		Pf1N1B4_2546	0.53	-2.4
2,890,019	-		Pf1N1B4_2546	0.53	-0.0
2,890,019	-		Pf1N1B4_2546	0.53	-3.5
2,890,061	-		Pf1N1B4_2546	0.55	-0.0
2,890,061	-		Pf1N1B4_2546	0.55	-0.0
2,890,076	+		Pf1N1B4_2546	0.56	-1.1
2,890,077	-		Pf1N1B4_2546	0.56	-0.0
2,890,091	+		Pf1N1B4_2546	0.57	-1.5
2,890,232	+		Pf1N1B4_2546	0.64	-0.0
2,890,232	+		Pf1N1B4_2546	0.64	-0.0
2,890,232	+		Pf1N1B4_2546	0.64	-0.0
2,890,232	+		Pf1N1B4_2546	0.64	-0.0
2,890,233	-		Pf1N1B4_2546	0.64	-0.0
2,890,266	+		Pf1N1B4_2546	0.66	-2.3
2,890,266	+		Pf1N1B4_2546	0.66	-2.3
2,890,267	-		Pf1N1B4_2546	0.66	-2.6
2,890,267	-		Pf1N1B4_2546	0.66	-2.9
2,890,267	-		Pf1N1B4_2546	0.66	-0.0
2,890,267	-		Pf1N1B4_2546	0.66	-2.5
2,890,327	+		Pf1N1B4_2546	0.69	-0.0
2,890,327	+		Pf1N1B4_2546	0.69	-0.0
2,890,327	+		Pf1N1B4_2546	0.69	-2.7
2,890,327	+		Pf1N1B4_2546	0.69	-0.0
2,890,327	+		Pf1N1B4_2546	0.69	-0.0
2,890,327	+		Pf1N1B4_2546	0.69	-0.0
2,890,447	+		Pf1N1B4_2546	0.76	-0.0
2,890,447	+		Pf1N1B4_2546	0.76	-2.0
2,890,447	+		Pf1N1B4_2546	0.76	-0.0
2,890,447	+		Pf1N1B4_2546	0.76	-0.0
2,890,447	+		Pf1N1B4_2546	0.76	-0.0
2,890,447	+		Pf1N1B4_2546	0.76	-2.9
2,890,447	+		Pf1N1B4_2546	0.76	-0.0
2,890,447	+		Pf1N1B4_2546	0.76	-0.0
2,890,447	+		Pf1N1B4_2546	0.76	-2.3
2,890,448	-		Pf1N1B4_2546	0.76	-0.0
2,890,448	-		Pf1N1B4_2546	0.76	-2.9
2,890,448	-		Pf1N1B4_2546	0.76	-0.4
2,890,448	-		Pf1N1B4_2546	0.76	-2.7
2,890,448	-		Pf1N1B4_2546	0.76	-0.0
2,890,448	-		Pf1N1B4_2546	0.76	-0.0
2,890,450	+		Pf1N1B4_2546	0.76	-0.0
2,890,450	+		Pf1N1B4_2546	0.76	-0.0
2,890,450	+		Pf1N1B4_2546	0.76	-2.9
2,890,450	+		Pf1N1B4_2546	0.76	-0.9
2,890,451	-		Pf1N1B4_2546	0.76	-0.0
2,890,451	-		Pf1N1B4_2546	0.76	-0.0
2,890,451	-		Pf1N1B4_2546	0.76	-3.1
2,890,493	-		Pf1N1B4_2546	0.78	-0.0
2,890,612	-				-0.7
2,890,714	+		Pf1N1B4_2546	0.90	-0.0
2,890,715	-		Pf1N1B4_2546	0.90	-0.0
2,890,925	-				-0.0
2,890,928	+				-0.0
2,890,928	+				-0.0
2,890,928	+				-0.0
2,890,929	-				-0.0
2,890,929	-				-0.0
2,890,939	+				-0.0
2,890,940	-				-0.0
2,890,954	+				-0.0
2,890,955	-				-0.0
2,891,026	+				-0.0
2,891,046	+				-0.0
2,891,046	+				-0.0
2,891,046	+				-3.0
2,891,046	+				-0.0
2,891,046	+				-0.0
2,891,046	+				-0.0
2,891,046	+				-0.0
2,891,046	+				-0.0
2,891,047	-				-0.0
2,891,047	-				-0.0
2,891,047	-				-4.6
2,891,047	-				-0.0
2,891,047	-				-5.5
2,891,051	+				-0.0
2,891,051	+				-2.4
2,891,051	+				-0.0
2,891,051	+				-3.2
2,891,052	-				-0.0
2,891,052	-				-0.0
2,891,052	-				-4.5
2,891,052	-				-0.0
2,891,052	-				-3.7
2,891,066	+				-3.8
2,891,066	+				-0.0
2,891,066	+				-3.6
2,891,066	+				-4.8
2,891,067	-				-0.0
2,891,067	-				-2.5
2,891,067	-				-0.0
2,891,067	-				-3.2
2,891,067	-				-0.0
2,891,067	-				-5.3
2,891,265	+				-0.0
2,891,287	-				-4.0
2,891,342	-				-0.0
2,891,342	-				-0.0
2,891,342	-				-3.1
2,891,352	+				-3.3
2,891,352	+				-5.4
2,891,353	-				-0.0
2,891,353	-				-0.0
2,891,356	+				-0.0
2,891,356	+				-4.3
2,891,356	+				-0.0
2,891,356	+				-4.0
2,891,356	+				-0.0
2,891,357	-				-0.0
2,891,372	-				-5.0
2,891,372	-				-0.0
2,891,500	-		Pf1N1B4_2547	0.30	-0.0
2,891,625	+		Pf1N1B4_2547	0.51	-0.0
2,891,625	+		Pf1N1B4_2547	0.51	-3.9
2,891,625	+		Pf1N1B4_2547	0.51	-0.0
2,891,626	-		Pf1N1B4_2547	0.52	-0.0
2,891,626	-		Pf1N1B4_2547	0.52	-0.0
2,891,632	-		Pf1N1B4_2547	0.53	-0.0
2,891,847	+		Pf1N1B4_2547	0.89	-0.0
2,891,847	+		Pf1N1B4_2547	0.89	-0.0
2,891,847	+		Pf1N1B4_2547	0.89	-3.6
2,891,847	+		Pf1N1B4_2547	0.89	-0.0