Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2382

Experiment: Nitrate reduction, replicate C t3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t3
2,697,479	+		Pf1N1B4_2380	0.79	-0.0
2,697,480	-				-3.2
2,697,480	-		Pf1N1B4_2380	0.80	-1.3
2,697,480	-		Pf1N1B4_2380	0.80	-1.7
2,697,480	-		Pf1N1B4_2380	0.80	-0.7
2,697,480	-		Pf1N1B4_2380	0.80	-1.2
2,697,480	-		Pf1N1B4_2380	0.80	-1.1
2,697,480	-		Pf1N1B4_2380	0.80	-1.1
2,697,480	-		Pf1N1B4_2380	0.80	-0.0
2,697,480	-		Pf1N1B4_2380	0.80	-1.0
2,697,480	-		Pf1N1B4_2380	0.80	-1.3
2,697,480	-		Pf1N1B4_2380	0.80	-1.2
2,697,480	-		Pf1N1B4_2380	0.80	-1.3
2,697,499	-		Pf1N1B4_2380	0.83	-0.0
2,697,499	-		Pf1N1B4_2380	0.83	-1.6
2,697,545	-				-0.0
2,697,545	-				-1.2
2,697,545	-				-0.7
2,697,598	+				-0.0
2,697,599	-				-1.5
2,697,599	-				-0.4
2,697,599	-				-1.0
2,697,599	-				-1.5
2,697,599	-				-1.3
2,697,599	-				-1.3
2,697,599	-				-0.0
2,697,599	-				-0.3
2,697,617	+				-0.0
2,697,617	+				-0.0
2,697,617	+				-2.3
2,697,617	+				-2.0
2,697,618	-				-0.0
2,697,618	-				-1.0
2,697,618	-				-1.1
2,697,618	-				+0.0
2,697,618	-				-0.0
2,697,618	-				-1.3
2,697,683	+				-1.3
2,697,683	+				-3.1
2,697,683	+				-1.4
2,697,683	+				-0.0
2,697,684	-				-1.1
2,697,684	-				-1.1
2,697,684	-				-1.4
2,697,684	-				-0.0
2,697,684	-				-1.3
2,697,684	-				-0.8
2,697,684	-				-0.8
2,697,684	-				-0.3
2,697,684	-				-0.0
2,697,684	-				-0.5
2,697,684	-				-0.7
2,697,684	-				-1.1
2,697,684	-				-0.0
2,697,684	-				-1.0
2,697,684	-				-0.0
2,697,684	-				-0.7
2,697,684	-				-0.0
2,697,684	-				-0.0
2,697,697	+		Pf1N1B4_2381	0.12	-0.0
2,697,697	+		Pf1N1B4_2381	0.12	-0.0
2,697,698	-		Pf1N1B4_2381	0.12	-1.0
2,697,698	-		Pf1N1B4_2381	0.12	-0.0
2,697,698	-		Pf1N1B4_2381	0.12	-1.0
2,697,698	-		Pf1N1B4_2381	0.12	-1.8
2,697,698	-		Pf1N1B4_2381	0.12	-1.6
2,697,698	-		Pf1N1B4_2381	0.12	-0.7
2,697,698	-		Pf1N1B4_2381	0.12	-0.1
2,697,698	-		Pf1N1B4_2381	0.12	-1.1
2,697,698	-		Pf1N1B4_2381	0.12	-1.1
2,697,698	-		Pf1N1B4_2381	0.12	-1.0
2,697,698	-		Pf1N1B4_2381	0.12	-0.0
2,697,698	-		Pf1N1B4_2381	0.12	-1.8
2,697,698	-		Pf1N1B4_2381	0.12	-0.9
2,697,763	+		Pf1N1B4_2381	0.23	-0.0
2,697,763	+		Pf1N1B4_2381	0.23	-2.4
2,697,763	+		Pf1N1B4_2381	0.23	-0.0
2,697,763	+		Pf1N1B4_2381	0.23	-3.4
2,697,763	+		Pf1N1B4_2381	0.23	-0.0
2,697,763	+		Pf1N1B4_2381	0.23	-4.3
2,697,763	+		Pf1N1B4_2381	0.23	-0.0
2,697,763	+		Pf1N1B4_2381	0.23	-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-1.0
2,697,764	-		Pf1N1B4_2381	0.23	-1.3
2,697,764	-		Pf1N1B4_2381	0.23	-1.0
2,697,764	-		Pf1N1B4_2381	0.23	-0.7
2,697,764	-		Pf1N1B4_2381	0.23	-1.1
2,697,764	-		Pf1N1B4_2381	0.23	-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-0.1
2,697,764	-		Pf1N1B4_2381	0.23	-1.2
2,697,764	-		Pf1N1B4_2381	0.23	-1.2
2,697,764	-		Pf1N1B4_2381	0.23	-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-0.4
2,697,764	-		Pf1N1B4_2381	0.23	-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-1.0
2,697,764	-		Pf1N1B4_2381	0.23	-0.8
2,697,764	-		Pf1N1B4_2381	0.23	-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-1.4
2,697,764	-		Pf1N1B4_2381	0.23	-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-1.3
2,697,764	-		Pf1N1B4_2381	0.23	-1.1
2,697,764	-		Pf1N1B4_2381	0.23	-0.9
2,697,764	-				-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-0.9
2,697,764	-		Pf1N1B4_2381	0.23	-1.1
2,697,764	-		Pf1N1B4_2381	0.23	-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-0.5
2,697,764	-		Pf1N1B4_2381	0.23	-0.9
2,697,764	-		Pf1N1B4_2381	0.23	-0.0
2,697,764	-		Pf1N1B4_2381	0.23	-0.7
2,697,764	-		Pf1N1B4_2381	0.23	-0.6
2,697,764	-		Pf1N1B4_2381	0.23	-0.5
2,697,764	-		Pf1N1B4_2381	0.23	-1.2
2,697,764	-		Pf1N1B4_2381	0.23	-1.1
2,697,764	-		Pf1N1B4_2381	0.23	-0.9
2,697,764	-		Pf1N1B4_2381	0.23	-1.2
2,697,764	-		Pf1N1B4_2381	0.23	-1.4
2,697,774	+		Pf1N1B4_2381	0.25	-0.0
2,698,004	+		Pf1N1B4_2381	0.64	-0.0
2,698,005	-		Pf1N1B4_2381	0.64	-1.2
2,698,094	-		Pf1N1B4_2381	0.79	-3.3
2,698,187	-				-1.5
2,698,187	-				-0.0
2,698,187	-				-1.2
2,698,187	-				-0.6
2,698,187	-				-0.4
2,698,187	-				-0.0
2,698,187	-				-0.0
2,698,187	-				-1.3
2,698,187	-				-1.2
2,698,187	-				-0.7
2,698,187	-				-2.3
2,698,187	-				-1.1
2,698,187	-				-2.8
2,698,187	-				-0.0
2,698,187	-				-1.3
2,698,187	-				-1.9
2,698,187	-				-0.0
2,698,187	-				-1.0
2,698,187	-				-1.4
2,698,187	-				-1.4
2,698,187	-				-1.2
2,698,187	-				-1.3
2,698,187	-				-0.0
2,698,187	-				-0.0
2,698,187	-				-1.2
2,698,187	-				-0.5
2,698,187	-				-0.0
2,698,191	+				-1.9
2,698,191	+				-0.0
2,698,192	-				-0.0
2,698,192	-				-0.0
2,698,192	-				-0.0
2,698,192	-				-0.0
2,698,192	-				-0.0
2,698,192	-				-0.0
2,698,192	-				-0.9
2,698,192	-				-0.0
2,698,192	-				-1.7
2,698,192	-				-1.5
2,698,192	-				-0.8
2,698,192	-				-0.9
2,698,192	-				-0.4
2,698,192	-				-0.0
2,698,192	-				-1.4
2,698,192	-				-0.7
2,698,192	-				-1.4
2,698,192	-				-0.0
2,698,192	-				-0.0
2,698,192	-				-1.1
2,698,192	-				-0.0
2,698,350	+				-0.0
2,698,351	-				-0.7
2,698,352	+				-1.7
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-3.4
2,698,352	+				-3.5
2,698,352	+				-0.6
2,698,352	+				-2.6
2,698,352	+				-2.1
2,698,352	+				-3.9
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-0.4
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-1.7
2,698,352	+				-0.0
2,698,352	+				-0.0
2,698,352	+				-4.2
2,698,353	-				-0.0
2,698,353	-				-2.3
2,698,353	-				-0.0
2,698,353	-				-0.0
2,698,353	-				-0.0
2,698,353	-				-0.0
2,698,353	-				-0.0
2,698,353	-				-0.0
2,698,353	-				-0.0
2,698,463	+				-5.1
2,698,463	+				-3.2
2,698,867	+		Pf1N1B4_2382	0.21	-0.0
2,698,867	+		Pf1N1B4_2382	0.21	-0.0
2,698,890	-		Pf1N1B4_2382	0.23	-0.0
2,699,066	+		Pf1N1B4_2382	0.32	-3.3
2,699,066	+		Pf1N1B4_2382	0.32	-0.0
2,699,067	-		Pf1N1B4_2382	0.32	-0.0
2,699,332	+		Pf1N1B4_2382	0.46	-0.0
2,699,332	+		Pf1N1B4_2382	0.46	-0.0
2,699,332	+		Pf1N1B4_2382	0.46	-1.3
2,699,332	+		Pf1N1B4_2382	0.46	-0.0
2,699,332	+		Pf1N1B4_2382	0.46	-2.8
2,699,332	+		Pf1N1B4_2382	0.46	-1.9
2,699,333	-		Pf1N1B4_2382	0.46	-0.1
2,699,333	-		Pf1N1B4_2382	0.46	-1.6
2,699,333	-		Pf1N1B4_2382	0.46	-0.0
2,699,333	-		Pf1N1B4_2382	0.46	-0.0
2,699,333	-		Pf1N1B4_2382	0.46	-1.5
2,699,333	-		Pf1N1B4_2382	0.46	-0.0
2,699,333	-		Pf1N1B4_2382	0.46	-0.0
2,699,333	-		Pf1N1B4_2382	0.46	-0.0
2,699,333	-		Pf1N1B4_2382	0.46	-0.0
2,699,333	-		Pf1N1B4_2382	0.46	-0.0
2,699,333	-		Pf1N1B4_2382	0.46	-0.0
2,699,333	-		Pf1N1B4_2382	0.46	-0.0
2,699,333	-		Pf1N1B4_2382	0.46	-0.0
2,699,333	-		Pf1N1B4_2382	0.46	-0.0
2,699,333	-				-0.5
2,699,333	-		Pf1N1B4_2382	0.46	-1.0
2,699,527	+		Pf1N1B4_2382	0.57	-0.0
2,699,527	+		Pf1N1B4_2382	0.57	-0.0
2,699,527	+		Pf1N1B4_2382	0.57	-0.0
2,699,528	-		Pf1N1B4_2382	0.57	-1.4
2,699,528	-		Pf1N1B4_2382	0.57	+0.4
2,699,646	+		Pf1N1B4_2382	0.63	-1.4
2,699,646	+		Pf1N1B4_2382	0.63	-2.4
2,699,646	+		Pf1N1B4_2382	0.63	-0.0
2,699,647	-		Pf1N1B4_2382	0.63	-1.8
2,699,647	-		Pf1N1B4_2382	0.63	-2.5
2,699,647	-		Pf1N1B4_2382	0.63	-0.0
2,700,025	+		Pf1N1B4_2382	0.84	-0.9
2,700,025	+		Pf1N1B4_2382	0.84	-0.0
2,700,025	+		Pf1N1B4_2382	0.84	-0.8
2,700,025	+		Pf1N1B4_2382	0.84	-0.9
2,700,025	+		Pf1N1B4_2382	0.84	-0.0
2,700,025	+		Pf1N1B4_2382	0.84	-2.7
2,700,025	+		Pf1N1B4_2382	0.84	-3.5
2,700,026	-		Pf1N1B4_2382	0.84	-1.4
2,700,026	-		Pf1N1B4_2382	0.84	-0.0
2,700,026	-		Pf1N1B4_2382	0.84	-2.0
2,700,026	-		Pf1N1B4_2382	0.84	-0.0
2,700,026	-		Pf1N1B4_2382	0.84	-0.3
2,700,026	-		Pf1N1B4_2382	0.84	-0.0
2,700,026	-		Pf1N1B4_2382	0.84	-0.7
2,700,026	-		Pf1N1B4_2382	0.84	-0.0
2,700,026	-		Pf1N1B4_2382	0.84	-1.5
2,700,026	-		Pf1N1B4_2382	0.84	-0.0
2,700,026	-		Pf1N1B4_2382	0.84	-0.4
2,700,179	+				-2.0
2,700,179	+				-0.0
2,700,179	+				-0.0
2,700,179	+				+0.1
2,700,179	+				-0.0
2,700,179	+				-0.0
2,700,180	-				-0.0
2,700,180	-				-0.0
2,700,180	-				-0.0
2,700,185	+				-0.5
2,700,186	-				-2.4
2,700,186	-				-0.0
2,700,186	-				-0.0
2,700,186	-				-1.6
2,700,257	+				-2.0
2,700,257	+				-1.1
2,700,258	-				-0.0
2,700,258	-				-0.0
2,700,258	-				-1.1
2,700,258	-				-0.0
2,700,267	-				-0.0
2,700,268	+				-1.2
2,700,269	-				-1.6
2,700,294	+				-1.9
2,700,294	+				-0.0
2,700,333	+				-1.1
2,700,333	+				-2.1
2,700,333	+				-2.3
2,700,333	+				-0.0
2,700,333	+				-0.3
2,700,334	-				-1.1
2,700,334	-				-0.8
2,700,334	-				-1.3
2,700,334	-				-0.9
2,700,334	-				-0.0
2,700,334	-				-1.5
2,700,334	-				-0.0
2,700,334	-				-0.0
2,700,344	+				-0.0
2,700,344	+				-0.0
2,700,344	+				-1.6
2,700,344	+				-1.1
2,700,344	+				-0.0
2,700,344	+				-1.4
2,700,344	+				-1.7
2,700,345	-				-0.0
2,700,345	-				-2.3
2,700,345	-				-0.0
2,700,345	-				-0.0
2,700,345	-				-4.0
2,700,345	-				-0.0
2,700,348	+				-0.0
2,700,348	+				-1.4
2,700,348	+				-2.9
2,700,349	-				-2.4
2,700,349	-				-0.0
2,700,392	+				-1.6
2,700,392	+				-0.0
2,700,392	+				-1.6
2,700,474	-				-4.7
2,700,539	+				-0.9
2,700,539	+				-2.0
2,700,539	+				-0.0
2,700,539	+				-0.0
2,700,539	+				-0.0
2,700,539	+				-0.0
2,700,539	+				-1.4
2,700,539	+				-0.0
2,700,539	+				+0.1
2,700,539	+				-1.6
2,700,539	+				-0.0
2,700,539	+				-1.9
2,700,539	+				-0.0
2,700,539	+				-1.6
2,700,539	+				-0.0
2,700,540	-				-2.9
2,700,540	-				-0.0
2,700,540	-				-0.0
2,700,540	-				-0.0
2,700,540	-				-0.0
2,700,541	+				-4.0
2,700,541	+				-0.0
2,700,541	+				-2.1
2,700,541	+				-0.0
2,700,741	+		Pf1N1B4_2383	0.22	-0.0
2,700,949	+		Pf1N1B4_2383	0.47	-0.0
2,700,950	-		Pf1N1B4_2383	0.47	-0.0
2,700,955	+		Pf1N1B4_2383	0.48	-2.3
2,701,030	+		Pf1N1B4_2383	0.57	-2.8
2,701,030	+		Pf1N1B4_2383	0.57	-0.0
2,701,030	+		Pf1N1B4_2383	0.57	-0.0
2,701,030	+		Pf1N1B4_2383	0.57	-0.0
2,701,031	-		Pf1N1B4_2383	0.57	-3.6
2,701,031	-				-0.0
2,701,038	+		Pf1N1B4_2383	0.58	-0.0
2,701,072	+		Pf1N1B4_2383	0.62	-2.3
2,701,110	-		Pf1N1B4_2383	0.66	-0.0
2,701,258	+		Pf1N1B4_2383	0.84	-2.7
2,701,258	+		Pf1N1B4_2383	0.84	-0.0
2,701,258	+		Pf1N1B4_2383	0.84	-2.6
2,701,259	-		Pf1N1B4_2383	0.84	-0.0
2,701,259	-		Pf1N1B4_2383	0.84	-0.0
2,701,259	-		Pf1N1B4_2383	0.84	-0.0
2,701,259	-		Pf1N1B4_2383	0.84	-0.0
2,701,264	+		Pf1N1B4_2383	0.84	-0.0
2,701,264	+		Pf1N1B4_2383	0.84	-0.0
2,701,264	+		Pf1N1B4_2383	0.84	-0.0
2,701,264	+		Pf1N1B4_2383	0.84	-1.1
2,701,264	+		Pf1N1B4_2383	0.84	-3.7
2,701,264	+		Pf1N1B4_2383	0.84	-0.0
2,701,265	-		Pf1N1B4_2383	0.85	-4.4
2,701,265	-		Pf1N1B4_2383	0.85	-0.0
2,701,265	-		Pf1N1B4_2383	0.85	-2.2
2,701,265	-		Pf1N1B4_2383	0.85	-0.0
2,701,265	-		Pf1N1B4_2383	0.85	-0.0