Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2357

Experiment: Nitrate reduction, replicate C t3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t3
2,667,959	+		Pf1N1B4_2354	0.11	+0.0
2,667,959	+		Pf1N1B4_2354	0.11	+0.0
2,667,959	+		Pf1N1B4_2354	0.11	+0.0
2,667,959	+		Pf1N1B4_2354	0.11	-4.1
2,667,959	+		Pf1N1B4_2354	0.11	+0.0
2,667,960	-		Pf1N1B4_2354	0.12	+0.0
2,667,960	-		Pf1N1B4_2354	0.12	+0.0
2,667,960	-		Pf1N1B4_2354	0.12	-3.7
2,668,160	-		Pf1N1B4_2354	0.66	+0.0
2,668,217	+		Pf1N1B4_2354	0.82	-2.0
2,668,217	+		Pf1N1B4_2354	0.82	+0.0
2,668,217	+		Pf1N1B4_2354	0.82	+0.0
2,668,217	+		Pf1N1B4_2354	0.82	+0.0
2,668,218	-		Pf1N1B4_2354	0.82	+0.0
2,668,218	-		Pf1N1B4_2354	0.82	+0.0
2,668,218	-		Pf1N1B4_2354	0.82	+0.0
2,668,218	-		Pf1N1B4_2354	0.82	+0.0
2,668,218	-		Pf1N1B4_2354	0.82	+0.0
2,668,432	-		Pf1N1B4_2355	0.26	-2.7
2,668,432	-		Pf1N1B4_2355	0.26	+0.0
2,668,432	-		Pf1N1B4_2355	0.26	+0.0
2,668,702	+		Pf1N1B4_2355	0.77	+0.0
2,668,702	+		Pf1N1B4_2355	0.77	+0.0
2,668,703	-		Pf1N1B4_2355	0.77	+0.0
2,668,703	-		Pf1N1B4_2355	0.77	+0.0
2,668,703	-		Pf1N1B4_2355	0.77	+0.0
2,668,706	+		Pf1N1B4_2355	0.77	+0.0
2,668,706	+		Pf1N1B4_2355	0.77	+0.0
2,668,707	-		Pf1N1B4_2355	0.78	+0.0
2,668,771	+		Pf1N1B4_2355	0.90	-2.6
2,668,772	-		Pf1N1B4_2355	0.90	-0.5
2,668,823	-				+0.0
2,668,823	-				-1.6
2,668,823	-				+0.0
2,668,863	+		Pf1N1B4_2356	0.46	-1.0
2,668,863	+		Pf1N1B4_2356	0.46	+0.0
2,668,863	+		Pf1N1B4_2356	0.46	+0.0
2,668,863	+		Pf1N1B4_2356	0.46	+0.0
2,668,863	+		Pf1N1B4_2356	0.46	-1.9
2,668,863	+		Pf1N1B4_2356	0.46	+0.0
2,668,863	+		Pf1N1B4_2356	0.46	+0.0
2,668,863	+		Pf1N1B4_2356	0.46	+0.0
2,668,863	+		Pf1N1B4_2356	0.46	+0.0
2,668,863	+		Pf1N1B4_2356	0.46	+0.0
2,668,864	-		Pf1N1B4_2356	0.46	+0.0
2,668,864	-		Pf1N1B4_2356	0.46	+0.0
2,668,864	-		Pf1N1B4_2356	0.46	+0.0
2,668,864	-		Pf1N1B4_2356	0.46	+0.0
2,668,961	+				+0.0
2,668,961	+				+0.0
2,668,962	-				+0.0
2,668,968	+				+0.0
2,669,068	+				-0.8
2,669,069	-				-1.2
2,669,101	+				-1.4
2,669,102	-				+0.0
2,669,102	-				+0.0
2,669,102	-				-3.5
2,669,102	-				+0.0
2,669,102	-				+0.0
2,669,102	-				+0.0
2,669,102	-				+0.0
2,669,237	-		Pf1N1B4_2357	0.14	+0.0
2,669,435	-		Pf1N1B4_2357	0.23	+0.0
2,669,542	-		Pf1N1B4_2357	0.28	-1.5
2,669,542	-		Pf1N1B4_2357	0.28	+0.0
2,669,794	-		Pf1N1B4_2357	0.41	+0.0
2,669,800	-		Pf1N1B4_2357	0.41	+0.0
2,669,884	-		Pf1N1B4_2357	0.45	-1.7
2,669,893	+		Pf1N1B4_2357	0.45	+0.0
2,669,894	-		Pf1N1B4_2357	0.46	-2.3
2,669,894	-		Pf1N1B4_2357	0.46	+0.0
2,669,894	-		Pf1N1B4_2357	0.46	+0.0
2,669,897	+		Pf1N1B4_2357	0.46	-1.4
2,669,897	+		Pf1N1B4_2357	0.46	+0.0
2,669,897	+		Pf1N1B4_2357	0.46	+0.0
2,669,897	+		Pf1N1B4_2357	0.46	+0.2
2,669,897	+		Pf1N1B4_2357	0.46	+0.0
2,669,897	+		Pf1N1B4_2357	0.46	+0.1
2,669,898	-		Pf1N1B4_2357	0.46	-1.0
2,669,898	-		Pf1N1B4_2357	0.46	+0.0
2,669,898	-		Pf1N1B4_2357	0.46	+0.0
2,669,898	-		Pf1N1B4_2357	0.46	-2.7
2,669,898	-		Pf1N1B4_2357	0.46	+0.0
2,669,898	-		Pf1N1B4_2357	0.46	+0.0
2,669,898	-		Pf1N1B4_2357	0.46	-0.8
2,670,115	+		Pf1N1B4_2357	0.56	+0.0
2,670,115	+		Pf1N1B4_2357	0.56	+0.3
2,670,115	+		Pf1N1B4_2357	0.56	+0.0
2,670,115	+		Pf1N1B4_2357	0.56	+0.0
2,670,115	+		Pf1N1B4_2357	0.56	+0.0
2,670,116	-		Pf1N1B4_2357	0.56	+0.0
2,670,116	-		Pf1N1B4_2357	0.56	-2.5
2,670,116	-		Pf1N1B4_2357	0.56	+0.0
2,670,116	-		Pf1N1B4_2357	0.56	+0.0
2,670,116	-		Pf1N1B4_2357	0.56	+0.0
2,670,593	+		Pf1N1B4_2357	0.79	+0.0
2,670,593	+		Pf1N1B4_2357	0.79	+0.0
2,670,594	-				+0.0
2,670,594	-		Pf1N1B4_2357	0.80	-1.9
2,670,594	-		Pf1N1B4_2357	0.80	+0.0
2,670,594	-		Pf1N1B4_2357	0.80	-1.5
2,670,801	+		Pf1N1B4_2357	0.90	+0.7
2,670,802	-		Pf1N1B4_2357	0.90	-2.5
2,670,802	-		Pf1N1B4_2357	0.90	+0.0
2,670,802	-		Pf1N1B4_2357	0.90	+0.0
2,670,802	-		Pf1N1B4_2357	0.90	+0.0
2,670,988	-				+0.0
2,671,029	+				+0.0
2,671,029	+				+0.0
2,671,030	-				-4.8
2,671,046	+				-1.4
2,671,046	+				-2.0
2,671,046	+				+0.0
2,671,047	-				+0.0
2,671,047	-				-2.3
2,671,047	-				-3.6
2,671,047	-				+0.0
2,671,047	-				+0.0
2,671,047	-				-2.4
2,671,051	-				-1.6
2,671,069	+				-3.7
2,671,069	+				+0.0
2,671,069	+				-2.4
2,671,069	+				-0.4
2,671,070	-				+0.0
2,671,070	-				+0.0
2,671,070	-				-1.0
2,671,070	-				+1.0
2,671,070	-				+0.0
2,671,070	-				+0.0
2,671,070	-				-3.0
2,671,070	-				+0.0
2,671,070	-				+0.0
2,671,070	-				-3.6
2,671,070	-				+0.0
2,671,070	-				-1.8
2,671,281	-				-2.0
2,671,281	-				+0.0
2,671,325	+				-1.5
2,671,354	+				+0.0
2,671,355	-				+0.0
2,671,355	-				-1.8
2,671,355	-				+0.0
2,671,389	-				+0.0
2,671,422	-				+0.0
2,671,422	-				-3.4
2,671,491	-				+0.0
2,671,861	+		Pf1N1B4_2358	0.14	-1.2
2,671,861	+		Pf1N1B4_2358	0.14	-2.6
2,671,861	+		Pf1N1B4_2358	0.14	+0.0
2,671,861	+		Pf1N1B4_2358	0.14	+0.0
2,671,861	+		Pf1N1B4_2358	0.14	+0.0
2,671,861	+		Pf1N1B4_2358	0.14	-1.0
2,671,861	+		Pf1N1B4_2358	0.14	-0.6
2,671,862	-		Pf1N1B4_2358	0.14	+0.0
2,671,862	-		Pf1N1B4_2358	0.14	-3.2
2,671,862	-		Pf1N1B4_2358	0.14	+0.0
2,671,862	-		Pf1N1B4_2358	0.14	-2.5
2,671,862	-		Pf1N1B4_2358	0.14	-2.3
2,671,862	-		Pf1N1B4_2358	0.14	+0.0
2,671,862	-		Pf1N1B4_2358	0.14	-1.7
2,671,862	-		Pf1N1B4_2358	0.14	+0.0
2,671,862	-		Pf1N1B4_2358	0.14	+0.0
2,671,862	-		Pf1N1B4_2358	0.14	+0.0
2,671,862	-		Pf1N1B4_2358	0.14	+0.0
2,671,862	-		Pf1N1B4_2358	0.14	+0.0
2,671,862	-		Pf1N1B4_2358	0.14	-2.9
2,671,862	-		Pf1N1B4_2358	0.14	+0.0
2,671,862	-		Pf1N1B4_2358	0.14	-3.1
2,671,863	+		Pf1N1B4_2358	0.14	-1.8
2,671,863	+		Pf1N1B4_2358	0.14	-1.8
2,671,864	-		Pf1N1B4_2358	0.14	-2.2
2,671,864	-		Pf1N1B4_2358	0.14	-2.0
2,671,864	-		Pf1N1B4_2358	0.14	+0.0
2,671,864	-		Pf1N1B4_2358	0.14	-4.5
2,671,864	-		Pf1N1B4_2358	0.14	-3.8
2,671,864	-		Pf1N1B4_2358	0.14	+0.0
2,671,916	-		Pf1N1B4_2358	0.15	+0.0