Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1557

Experiment: Nitrate reduction, replicate C t3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t3
1,795,198	+		Pf1N1B4_1556	0.15	-3.2
1,795,199	-				-0.0
1,795,199	-		Pf1N1B4_1556	0.15	-2.2
1,795,335	+		Pf1N1B4_1556	0.31	-0.0
1,795,335	+		Pf1N1B4_1556	0.31	-0.0
1,795,515	+		Pf1N1B4_1556	0.52	-0.0
1,795,515	+		Pf1N1B4_1556	0.52	-0.0
1,795,516	-		Pf1N1B4_1556	0.52	-0.0
1,795,516	-		Pf1N1B4_1556	0.52	-1.8
1,795,516	-		Pf1N1B4_1556	0.52	-0.0
1,795,557	+		Pf1N1B4_1556	0.57	-3.1
1,795,558	-		Pf1N1B4_1556	0.57	-3.2
1,795,638	+		Pf1N1B4_1556	0.67	-0.0
1,795,638	+		Pf1N1B4_1556	0.67	-0.0
1,795,639	-		Pf1N1B4_1556	0.67	-2.6
1,795,639	-		Pf1N1B4_1556	0.67	-0.0
1,795,639	-		Pf1N1B4_1556	0.67	-0.0
1,795,888	+				-0.0
1,795,889	-				-0.0
1,795,889	-				-0.0
1,795,942	-				-0.0
1,795,942	-				-1.0
1,795,994	+				-3.4
1,795,995	-				-3.1
1,795,995	-				-2.6
1,796,046	+				-2.5
1,796,046	+				-0.0
1,796,047	-				-0.0
1,796,193	+				-0.0
1,796,193	+				-1.2
1,796,194	-				-0.0
1,796,194	-				-0.0
1,796,194	-				-0.0
1,796,240	-		Pf1N1B4_1557	0.11	-2.2
1,796,320	-		Pf1N1B4_1557	0.16	-2.0
1,796,340	+		Pf1N1B4_1557	0.17	-1.8
1,796,340	+		Pf1N1B4_1557	0.17	-1.0
1,796,341	-		Pf1N1B4_1557	0.17	-0.0
1,796,341	-		Pf1N1B4_1557	0.17	-0.0
1,796,341	-		Pf1N1B4_1557	0.17	-0.0
1,796,341	-		Pf1N1B4_1557	0.17	-0.0
1,796,511	-		Pf1N1B4_1557	0.27	-0.0
1,796,511	-		Pf1N1B4_1557	0.27	-0.0
1,796,667	+		Pf1N1B4_1557	0.37	-0.0
1,796,668	-		Pf1N1B4_1557	0.37	-1.2
1,796,668	-		Pf1N1B4_1557	0.37	-0.0
1,796,668	-		Pf1N1B4_1557	0.37	-0.0
1,796,668	-		Pf1N1B4_1557	0.37	-2.2
1,796,691	+		Pf1N1B4_1557	0.38	-0.0
1,796,692	-		Pf1N1B4_1557	0.38	-0.0
1,796,705	-		Pf1N1B4_1557	0.39	-0.0
1,796,733	+		Pf1N1B4_1557	0.40	-2.5
1,796,733	+		Pf1N1B4_1557	0.40	-0.0
1,796,734	-		Pf1N1B4_1557	0.41	-0.0
1,796,734	-		Pf1N1B4_1557	0.41	-0.0
1,796,734	-		Pf1N1B4_1557	0.41	-0.0
1,796,734	-		Pf1N1B4_1557	0.41	-0.0
1,796,734	-		Pf1N1B4_1557	0.41	-2.6
1,796,736	+		Pf1N1B4_1557	0.41	-0.0
1,796,736	+		Pf1N1B4_1557	0.41	-0.0
1,796,736	+		Pf1N1B4_1557	0.41	-0.0
1,796,736	+		Pf1N1B4_1557	0.41	-0.0
1,796,736	+		Pf1N1B4_1557	0.41	-1.7
1,796,736	+		Pf1N1B4_1557	0.41	-3.2
1,796,737	-		Pf1N1B4_1557	0.41	-0.0
1,796,737	-		Pf1N1B4_1557	0.41	-2.1
1,796,737	-		Pf1N1B4_1557	0.41	-0.0
1,796,737	-		Pf1N1B4_1557	0.41	-0.0
1,796,859	+		Pf1N1B4_1557	0.48	-2.4
1,796,860	-				-0.6
1,796,995	+		Pf1N1B4_1557	0.56	-0.0
1,796,995	+		Pf1N1B4_1557	0.56	-0.0
1,796,995	+		Pf1N1B4_1557	0.56	-1.1
1,796,996	-		Pf1N1B4_1557	0.56	-0.0
1,796,996	-		Pf1N1B4_1557	0.56	-1.8
1,797,019	-		Pf1N1B4_1557	0.57	-2.8
1,797,019	-		Pf1N1B4_1557	0.57	-0.0
1,797,019	-		Pf1N1B4_1557	0.57	-0.0
1,797,019	-		Pf1N1B4_1557	0.57	-4.0
1,797,019	-		Pf1N1B4_1557	0.57	-0.0
1,797,019	-		Pf1N1B4_1557	0.57	-0.0
1,797,046	+		Pf1N1B4_1557	0.59	-0.0
1,797,047	-		Pf1N1B4_1557	0.59	-2.3
1,797,047	-		Pf1N1B4_1557	0.59	-0.0
1,797,186	+		Pf1N1B4_1557	0.67	-2.2
1,797,186	+		Pf1N1B4_1557	0.67	-0.0
1,797,186	+		Pf1N1B4_1557	0.67	-0.7
1,797,187	-		Pf1N1B4_1557	0.67	-1.5
1,797,187	-		Pf1N1B4_1557	0.67	-0.0
1,797,197	+		Pf1N1B4_1557	0.68	-2.4
1,797,198	-		Pf1N1B4_1557	0.68	-0.0
1,797,201	+		Pf1N1B4_1557	0.68	-1.7
1,797,201	+		Pf1N1B4_1557	0.68	-0.0
1,797,201	+		Pf1N1B4_1557	0.68	-1.8
1,797,202	-		Pf1N1B4_1557	0.68	-0.0
1,797,202	-		Pf1N1B4_1557	0.68	-0.0
1,797,202	-		Pf1N1B4_1557	0.68	-2.1
1,797,241	-		Pf1N1B4_1557	0.71	-2.0
1,797,432	+		Pf1N1B4_1557	0.82	-0.0
1,797,445	+		Pf1N1B4_1557	0.83	-2.2
1,797,446	-		Pf1N1B4_1557	0.83	-3.0
1,797,446	-		Pf1N1B4_1557	0.83	-0.0
1,797,493	+		Pf1N1B4_1557	0.86	-0.0
1,797,493	+		Pf1N1B4_1557	0.86	-2.5
1,797,493	+		Pf1N1B4_1557	0.86	-0.0
1,797,494	-		Pf1N1B4_1557	0.86	-0.0
1,797,494	-		Pf1N1B4_1557	0.86	-0.0
1,797,494	-		Pf1N1B4_1557	0.86	-0.0
1,797,494	-		Pf1N1B4_1557	0.86	-1.6
1,797,494	-		Pf1N1B4_1557	0.86	-2.8
1,797,494	-		Pf1N1B4_1557	0.86	-1.4
1,797,494	-		Pf1N1B4_1557	0.86	-0.0
1,797,535	-		Pf1N1B4_1557	0.88	-0.0
1,797,535	-		Pf1N1B4_1557	0.88	-0.0
1,797,535	-		Pf1N1B4_1557	0.88	-2.7
1,797,535	-		Pf1N1B4_1557	0.88	-0.0
1,797,535	-		Pf1N1B4_1557	0.88	-0.0
1,797,535	-		Pf1N1B4_1557	0.88	-1.6
1,797,535	-		Pf1N1B4_1557	0.88	-3.0
1,797,535	-		Pf1N1B4_1557	0.88	-0.0
1,797,576	+				-0.9
1,797,576	+				-0.0
1,797,579	+				-1.6
1,797,580	-				-0.0
1,797,580	-				-2.9
1,797,580	-				-0.0
1,797,580	-				-0.0
1,797,603	-				-0.0
1,797,687	+				-0.0
1,797,688	-				-0.0
1,797,714	-				-1.7
1,797,717	+				-0.0
1,797,717	+				-2.3
1,797,717	+				-0.0
1,797,717	+				-0.0
1,797,718	-				-1.7
1,797,718	-				-0.0
1,797,718	-				-0.0
1,797,718	-				-0.0
1,797,718	-				-1.4
1,797,718	-				-0.0
1,797,718	-				-3.2
1,797,718	-				-1.8
1,797,740	-				-0.0
1,797,782	+				-0.0
1,797,782	+				-2.5
1,797,782	+				-4.0
1,797,911	+		Pf1N1B4_1558	0.19	-2.7
1,797,912	-		Pf1N1B4_1558	0.19	-0.0
1,797,912	-				-0.0
1,797,915	-		Pf1N1B4_1558	0.19	-0.0
1,798,026	-		Pf1N1B4_1558	0.37	-0.0
1,798,275	-		Pf1N1B4_1558	0.77	+1.4
1,798,319	+		Pf1N1B4_1558	0.85	-5.4
1,798,319	+		Pf1N1B4_1558	0.85	-0.0
1,798,319	+		Pf1N1B4_1558	0.85	-0.0
1,798,319	+		Pf1N1B4_1558	0.85	-5.0
1,798,445	+				-2.1
1,798,445	+				-0.0
1,798,446	-				-0.0
1,798,526	+				-0.0
1,798,526	+				-0.0
1,798,526	+				-0.0
1,798,526	+				-0.0