Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1040

Experiment: Nitrate reduction, replicate C t3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t3
1,177,818	+		Pf1N1B4_1038	0.88	-0.1
1,177,942	+				-0.1
1,177,942	+				-0.1
1,177,942	+				-0.1
1,177,942	+				-3.5
1,177,943	-				-2.5
1,177,943	-				-0.1
1,177,952	+				-0.1
1,177,952	+				-2.6
1,177,952	+				-3.0
1,177,953	-				-0.1
1,178,010	+				-3.1
1,178,011	-				-0.1
1,178,105	-				-0.1
1,178,146	+				-0.1
1,178,147	-				-3.3
1,178,272	-		Pf1N1B4_1039	0.23	-0.1
1,178,308	+		Pf1N1B4_1039	0.29	-0.1
1,178,309	-		Pf1N1B4_1039	0.29	-0.1
1,178,309	-		Pf1N1B4_1039	0.29	-0.1
1,178,532	+		Pf1N1B4_1039	0.69	-0.1
1,178,533	-		Pf1N1B4_1039	0.69	-2.4
1,178,612	+		Pf1N1B4_1039	0.83	-0.1
1,178,612	+		Pf1N1B4_1039	0.83	-0.1
1,178,613	-		Pf1N1B4_1039	0.83	-0.1
1,178,613	-		Pf1N1B4_1039	0.83	-2.1
1,178,613	-		Pf1N1B4_1039	0.83	-0.1
1,178,613	-		Pf1N1B4_1039	0.83	+0.9
1,178,613	-		Pf1N1B4_1039	0.83	-3.5
1,178,718	+				-2.4
1,178,719	-				-0.1
1,178,719	-				-0.1
1,178,742	+				-0.1
1,178,742	+				-0.1
1,178,742	+				-2.1
1,178,742	+				-0.1
1,178,742	+				-0.1
1,178,743	-				-0.9
1,178,743	-				-0.1
1,178,743	-				-1.6
1,178,743	-				-2.5
1,178,743	-				-0.1
1,178,743	-				-0.1
1,178,743	-				-3.2
1,178,743	-				-2.2
1,178,767	-				-0.1
1,178,769	-				-0.1
1,178,769	-				-0.1
1,178,781	-				-0.1
1,178,808	+				-0.1
1,178,809	-				-0.1
1,179,120	+		Pf1N1B4_1040	0.45	-2.1
1,179,120	+		Pf1N1B4_1040	0.45	+0.3
1,179,120	+		Pf1N1B4_1040	0.45	-0.1
1,179,121	-		Pf1N1B4_1040	0.45	-3.8
1,179,121	-		Pf1N1B4_1040	0.45	-0.1
1,179,121	-				-0.1
1,179,338	+		Pf1N1B4_1040	0.76	-0.1
1,179,338	+				+3.3
1,179,339	-		Pf1N1B4_1040	0.76	-0.1
1,179,427	+		Pf1N1B4_1040	0.88	-0.1
1,179,427	+		Pf1N1B4_1040	0.88	-0.2
1,179,427	+		Pf1N1B4_1040	0.88	-0.1
1,179,427	+		Pf1N1B4_1040	0.88	-0.1
1,179,428	-		Pf1N1B4_1040	0.88	-0.1
1,179,428	-		Pf1N1B4_1040	0.88	-0.1
1,179,428	-		Pf1N1B4_1040	0.88	-1.8
1,179,428	-		Pf1N1B4_1040	0.88	-0.1
1,179,428	-		Pf1N1B4_1040	0.88	-0.1
1,179,442	+				-0.1
1,179,460	+				+1.2
1,179,460	+				-0.1
1,179,460	+				-0.1
1,179,461	-				-2.6
1,179,461	-				-0.1
1,179,461	-				-0.1
1,179,508	+				-0.1
1,179,508	+				-0.1
1,179,508	+				-2.8
1,179,508	+				-0.1
1,179,508	+				+0.1
1,179,541	-				-2.5
1,179,573	-				-2.2
1,179,659	+		Pf1N1B4_1041	0.22	-0.1
1,179,659	+				-0.1
1,179,659	+		Pf1N1B4_1041	0.22	-0.1
1,179,660	-		Pf1N1B4_1041	0.22	-0.1
1,179,660	-				-1.1
1,179,660	-		Pf1N1B4_1041	0.22	-0.1
1,179,660	-		Pf1N1B4_1041	0.22	-2.8
1,179,674	+		Pf1N1B4_1041	0.24	-0.1
1,179,675	-		Pf1N1B4_1041	0.25	-0.1
1,179,761	+		Pf1N1B4_1041	0.40	-0.1
1,179,761	+		Pf1N1B4_1041	0.40	-0.1
1,179,762	-		Pf1N1B4_1041	0.40	-0.1
1,179,762	-		Pf1N1B4_1041	0.40	-2.4
1,179,815	+		Pf1N1B4_1041	0.49	-0.1
1,179,815	+		Pf1N1B4_1041	0.49	-2.1
1,179,815	+				-2.9
1,179,815	+		Pf1N1B4_1041	0.49	-0.1
1,179,815	+		Pf1N1B4_1041	0.49	-3.0
1,179,816	-		Pf1N1B4_1041	0.49	-0.1
1,179,816	-		Pf1N1B4_1041	0.49	-0.1
1,179,816	-		Pf1N1B4_1041	0.49	-0.1
1,179,816	-		Pf1N1B4_1041	0.49	-0.1
1,179,816	-		Pf1N1B4_1041	0.49	-0.1
1,179,816	-		Pf1N1B4_1041	0.49	-0.1
1,179,816	-		Pf1N1B4_1041	0.49	-0.1
1,179,816	-		Pf1N1B4_1041	0.49	-3.7
1,179,816	-		Pf1N1B4_1041	0.49	-0.1
1,179,816	-		Pf1N1B4_1041	0.49	-0.1
1,179,816	-		Pf1N1B4_1041	0.49	-2.2
1,179,816	-		Pf1N1B4_1041	0.49	-0.1
1,179,816	-		Pf1N1B4_1041	0.49	-0.1
1,179,817	+		Pf1N1B4_1041	0.49	-0.1
1,179,818	-		Pf1N1B4_1041	0.49	-0.1
1,179,818	-		Pf1N1B4_1041	0.49	-0.1
1,179,868	+		Pf1N1B4_1041	0.58	-1.8
1,179,868	+		Pf1N1B4_1041	0.58	-0.1
1,179,868	+		Pf1N1B4_1041	0.58	-2.6
1,179,868	+		Pf1N1B4_1041	0.58	-2.6
1,179,869	-		Pf1N1B4_1041	0.58	-1.4
1,179,869	-		Pf1N1B4_1041	0.58	-2.9
1,179,869	-		Pf1N1B4_1041	0.58	-0.1
1,179,869	-		Pf1N1B4_1041	0.58	-0.1
1,180,063	+				-0.1
1,180,064	-				-0.1
1,180,064	-				-0.1
1,180,067	-				-0.1
1,180,106	+				-1.7
1,180,106	+				-0.1
1,180,106	+				-0.1
1,180,106	+				-0.1
1,180,106	+				-0.1
1,180,106	+				-0.1
1,180,106	+				-0.1
1,180,107	-				-0.1
1,180,107	-				-0.1
1,180,107	-				-2.4
1,180,107	-				-1.6
1,180,107	-				-0.1
1,180,176	-		Pf1N1B4_1042	0.17	-0.1
1,180,288	+		Pf1N1B4_1042	0.48	-2.2
1,180,288	+		Pf1N1B4_1042	0.48	-2.2
1,180,402	+		Pf1N1B4_1042	0.78	-2.9
1,180,402	+		Pf1N1B4_1042	0.78	-1.8
1,180,507	+				-3.3
1,180,508	-				-2.7
1,180,508	-				-2.9
1,180,508	-				-0.1