Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU_tRNA-Pro-2

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcheB-2 and tRNA-Pro are separated by 184 nucleotidestRNA-Pro and DVU2079 are separated by 74 nucleotides DVU2078: cheB-2 - protein-glutamate methylesterase CheB (TIGR), at 2,162,209 to 2,163,312 cheB-2 DVU_tRNA-Pro-2: tRNA-Pro - tRNA with anticodon CGG for Pro (VIMSS-AUTO), at 2,163,497 to 2,163,574 tRNA-Pro DVU2079: DVU2079 - sensory box histidine kinase (TIGR), at 2,163,649 to 2,166,084 DVU2079 Position (kb) 2163 2164Strain fitness (log2 ratio) -3 -2 -1 0 1at 2162.560 kb on + strand, within cheB-2at 2162.560 kb on + strand, within cheB-2at 2162.568 kb on - strand, within cheB-2at 2162.636 kb on - strand, within cheB-2at 2162.666 kb on + strand, within cheB-2at 2162.674 kb on - strand, within cheB-2at 2162.674 kb on - strand, within cheB-2at 2162.866 kb on - strand, within cheB-2at 2162.914 kb on - strand, within cheB-2at 2162.933 kb on + strand, within cheB-2at 2162.980 kb on - strand, within cheB-2at 2163.134 kb on + strand, within cheB-2at 2163.139 kb on + strand, within cheB-2at 2163.188 kb on + strand, within cheB-2at 2163.197 kb on - strand, within cheB-2at 2163.267 kb on - strandat 2163.297 kb on + strandat 2163.393 kb on - strandat 2163.703 kb on + strandat 2163.782 kb on + strandat 2163.909 kb on - strand, within DVU2079at 2164.036 kb on + strand, within DVU2079at 2164.041 kb on + strand, within DVU2079at 2164.098 kb on + strand, within DVU2079at 2164.208 kb on - strand, within DVU2079at 2164.231 kb on + strand, within DVU2079at 2164.257 kb on + strand, within DVU2079at 2164.265 kb on - strand, within DVU2079at 2164.272 kb on + strand, within DVU2079at 2164.519 kb on + strand, within DVU2079at 2164.529 kb on - strand, within DVU2079at 2164.562 kb on - strand, within DVU2079

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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2,162,560 + cheB-2 DVU2078 0.32 -1.0
2,162,560 + cheB-2 DVU2078 0.32 -1.4
2,162,568 - cheB-2 DVU2078 0.33 -1.2
2,162,636 - cheB-2 DVU2078 0.39 -1.7
2,162,666 + cheB-2 DVU2078 0.41 -0.6
2,162,674 - cheB-2 DVU2078 0.42 -2.0
2,162,674 - cheB-2 DVU2078 0.42 -2.6
2,162,866 - cheB-2 DVU2078 0.60 -1.5
2,162,914 - cheB-2 DVU2078 0.64 -0.7
2,162,933 + cheB-2 DVU2078 0.66 -1.3
2,162,980 - cheB-2 DVU2078 0.70 +0.0
2,163,134 + cheB-2 DVU2078 0.84 -3.7
2,163,139 + cheB-2 DVU2078 0.84 -1.4
2,163,188 + cheB-2 DVU2078 0.89 +0.4
2,163,197 - cheB-2 DVU2078 0.89 -2.9
2,163,267 - -2.5
2,163,297 + -1.9
2,163,393 - -0.8
2,163,703 + +0.0
2,163,782 + +0.2
2,163,909 - DVU2079 0.11 -0.4
2,164,036 + DVU2079 0.16 +0.0
2,164,041 + DVU2079 0.16 -0.4
2,164,098 + DVU2079 0.18 +0.0
2,164,208 - DVU2079 0.23 -0.1
2,164,231 + DVU2079 0.24 -0.2
2,164,257 + DVU2079 0.25 -0.5
2,164,265 - DVU2079 0.25 -0.3
2,164,272 + DVU2079 0.26 -0.1
2,164,519 + DVU2079 0.36 -0.8
2,164,529 - DVU2079 0.36 -0.3
2,164,562 - DVU2079 0.37 -0.1

Or see this region's nucleotide sequence