Experiment: MoLS4 with L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0519 and DVU0520 are separated by 11 nucleotides DVU0520 and csrA are separated by 13 nucleotides csrA and yviF overlap by 22 nucleotides
DVU0519: DVU0519 - flagellar hook-associated protein FlgK, putative (TIGR), at 592,514 to 594,610
DVU0519
DVU0520: DVU0520 - flagellar hook-associated protein FlgL, putative (TIGR), at 594,622 to 596,193
DVU0520
DVU0521: csrA - carbon storage regulator (TIGR), at 596,207 to 596,443
csrA
DVU0522: yviF - conserved hypothetical protein (TIGR), at 596,422 to 596,943
yviF
Position (kb) 594
595
596
597 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.689 kb on + strand, within DVU0519 at 593.735 kb on + strand, within DVU0519 at 593.736 kb on + strand, within DVU0519 at 593.808 kb on + strand, within DVU0519 at 593.818 kb on + strand, within DVU0519 at 593.826 kb on - strand, within DVU0519 at 593.997 kb on + strand, within DVU0519 at 594.132 kb on + strand, within DVU0519 at 594.138 kb on - strand, within DVU0519 at 594.163 kb on - strand, within DVU0519 at 594.192 kb on + strand, within DVU0519 at 594.200 kb on - strand, within DVU0519 at 594.248 kb on - strand, within DVU0519 at 594.288 kb on + strand, within DVU0519 at 594.305 kb on + strand, within DVU0519 at 594.381 kb on + strand, within DVU0519 at 594.390 kb on + strand, within DVU0519 at 594.467 kb on - strand at 594.557 kb on + strand at 594.597 kb on + strand at 594.797 kb on - strand, within DVU0520 at 594.811 kb on - strand, within DVU0520 at 594.824 kb on - strand, within DVU0520 at 594.826 kb on + strand, within DVU0520 at 594.826 kb on + strand, within DVU0520 at 594.834 kb on - strand, within DVU0520 at 594.840 kb on - strand, within DVU0520 at 594.865 kb on + strand, within DVU0520 at 594.865 kb on + strand, within DVU0520 at 594.869 kb on + strand, within DVU0520 at 594.875 kb on - strand, within DVU0520 at 594.888 kb on + strand, within DVU0520 at 594.888 kb on + strand, within DVU0520 at 594.890 kb on + strand, within DVU0520 at 594.896 kb on - strand, within DVU0520 at 594.896 kb on - strand, within DVU0520 at 594.929 kb on + strand, within DVU0520 at 594.979 kb on - strand, within DVU0520 at 595.029 kb on - strand, within DVU0520 at 595.093 kb on - strand, within DVU0520 at 595.289 kb on + strand, within DVU0520 at 595.289 kb on + strand, within DVU0520 at 595.292 kb on + strand, within DVU0520 at 595.301 kb on + strand, within DVU0520 at 595.303 kb on - strand, within DVU0520 at 595.337 kb on - strand, within DVU0520 at 595.357 kb on - strand, within DVU0520 at 595.389 kb on + strand, within DVU0520 at 595.396 kb on + strand, within DVU0520 at 595.466 kb on + strand, within DVU0520 at 595.476 kb on - strand, within DVU0520 at 595.510 kb on - strand, within DVU0520 at 595.564 kb on + strand, within DVU0520 at 595.622 kb on + strand, within DVU0520 at 595.699 kb on + strand, within DVU0520 at 595.739 kb on + strand, within DVU0520 at 595.796 kb on - strand, within DVU0520 at 595.802 kb on - strand, within DVU0520 at 595.826 kb on - strand, within DVU0520 at 595.864 kb on + strand, within DVU0520 at 595.920 kb on + strand, within DVU0520 at 595.935 kb on - strand, within DVU0520 at 595.935 kb on - strand, within DVU0520 at 596.027 kb on - strand, within DVU0520 at 596.029 kb on - strand, within DVU0520 at 596.106 kb on - strand at 596.128 kb on + strand at 596.187 kb on + strand at 596.228 kb on - strand at 596.285 kb on - strand, within csrA at 596.353 kb on - strand, within csrA at 596.394 kb on + strand, within csrA at 596.397 kb on - strand, within csrA at 596.469 kb on + strand at 596.486 kb on + strand, within yviF at 596.507 kb on + strand, within yviF at 596.610 kb on + strand, within yviF at 596.686 kb on + strand, within yviF at 596.694 kb on + strand, within yviF at 596.756 kb on + strand, within yviF at 596.771 kb on + strand, within yviF at 596.938 kb on + strand at 596.938 kb on + strand at 597.143 kb on - strand at 597.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N) remove 593,640 - DVU0519 0.54 -0.5 593,640 - DVU0519 0.54 -1.7 593,640 - DVU0519 0.54 -1.6 593,640 - DVU0519 0.54 -1.8 593,640 - DVU0519 0.54 -0.6 593,689 + DVU0519 0.56 -1.9 593,735 + DVU0519 0.58 -0.8 593,736 + DVU0519 0.58 -1.6 593,808 + DVU0519 0.62 -1.6 593,818 + DVU0519 0.62 -2.1 593,826 - DVU0519 0.63 -3.2 593,997 + DVU0519 0.71 -1.4 594,132 + DVU0519 0.77 -0.5 594,138 - DVU0519 0.77 -1.2 594,163 - DVU0519 0.79 -2.1 594,192 + DVU0519 0.80 -1.6 594,200 - DVU0519 0.80 -2.2 594,248 - DVU0519 0.83 -1.5 594,288 + DVU0519 0.85 -1.4 594,305 + DVU0519 0.85 -1.9 594,381 + DVU0519 0.89 -2.9 594,390 + DVU0519 0.89 -1.7 594,467 - -1.9 594,557 + -2.0 594,597 + +2.3 594,797 - DVU0520 0.11 -2.2 594,811 - DVU0520 0.12 -1.7 594,824 - DVU0520 0.13 -1.4 594,826 + DVU0520 0.13 -3.5 594,826 + DVU0520 0.13 -1.6 594,834 - DVU0520 0.13 -2.5 594,840 - DVU0520 0.14 -1.0 594,865 + DVU0520 0.15 -4.3 594,865 + DVU0520 0.15 -2.0 594,869 + DVU0520 0.16 -1.1 594,875 - DVU0520 0.16 -2.2 594,888 + DVU0520 0.17 -1.9 594,888 + DVU0520 0.17 -3.1 594,890 + DVU0520 0.17 -2.3 594,896 - DVU0520 0.17 -2.1 594,896 - DVU0520 0.17 -1.9 594,929 + DVU0520 0.20 -0.5 594,979 - DVU0520 0.23 -2.2 595,029 - DVU0520 0.26 -2.2 595,093 - DVU0520 0.30 -1.0 595,289 + DVU0520 0.42 -3.1 595,289 + DVU0520 0.42 -1.9 595,292 + DVU0520 0.43 -1.1 595,301 + DVU0520 0.43 -2.2 595,303 - DVU0520 0.43 -2.5 595,337 - DVU0520 0.45 -1.6 595,357 - DVU0520 0.47 -1.9 595,389 + DVU0520 0.49 -2.9 595,396 + DVU0520 0.49 -1.6 595,466 + DVU0520 0.54 -0.4 595,476 - DVU0520 0.54 -0.5 595,510 - DVU0520 0.56 -1.8 595,564 + DVU0520 0.60 -1.5 595,622 + DVU0520 0.64 -1.7 595,699 + DVU0520 0.69 -2.0 595,739 + DVU0520 0.71 -1.5 595,796 - DVU0520 0.75 -1.3 595,802 - DVU0520 0.75 -1.7 595,826 - DVU0520 0.77 -1.3 595,864 + DVU0520 0.79 -1.8 595,920 + DVU0520 0.83 -2.1 595,935 - DVU0520 0.84 +0.4 595,935 - DVU0520 0.84 -0.5 596,027 - DVU0520 0.89 -0.5 596,029 - DVU0520 0.90 -2.4 596,106 - -2.8 596,128 + -0.4 596,187 + -0.1 596,228 - -1.3 596,285 - csrA DVU0521 0.33 -1.4 596,353 - csrA DVU0521 0.62 -0.0 596,394 + csrA DVU0521 0.79 +0.7 596,397 - csrA DVU0521 0.80 -1.1 596,469 + -2.3 596,486 + yviF DVU0522 0.12 -1.0 596,507 + yviF DVU0522 0.16 -0.5 596,610 + yviF DVU0522 0.36 -0.2 596,686 + yviF DVU0522 0.51 -1.3 596,694 + yviF DVU0522 0.52 -0.8 596,756 + yviF DVU0522 0.64 -0.9 596,771 + yviF DVU0522 0.67 -1.3 596,938 + -1.2 596,938 + +0.1 597,143 - -1.1 597,164 - -0.1
Or see this region's nucleotide sequence