Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2773

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2772 and DVU2773 are separated by 238 nucleotidesDVU2773 and DVU2774 are separated by 126 nucleotides DVU2772: DVU2772 - conserved hypothetical protein (TIGR), at 2,879,148 to 2,880,470 DVU2772 DVU2773: DVU2773 - membrane protein, putative (TIGR), at 2,880,709 to 2,881,575 DVU2773 DVU2774: DVU2774 - CBS domain protein/ACT domain protein (TIGR), at 2,881,702 to 2,882,385 DVU2774 Position (kb) 2880 2881 2882Strain fitness (log2 ratio) -3 -2 -1 0 1at 2879.721 kb on - strand, within DVU2772at 2879.721 kb on - strand, within DVU2772at 2879.729 kb on + strand, within DVU2772at 2879.729 kb on + strand, within DVU2772at 2879.737 kb on - strand, within DVU2772at 2879.745 kb on + strand, within DVU2772at 2879.745 kb on + strand, within DVU2772at 2879.767 kb on - strand, within DVU2772at 2879.768 kb on + strand, within DVU2772at 2879.785 kb on + strand, within DVU2772at 2879.785 kb on - strand, within DVU2772at 2879.908 kb on - strand, within DVU2772at 2879.918 kb on - strand, within DVU2772at 2879.950 kb on + strand, within DVU2772at 2879.980 kb on + strand, within DVU2772at 2880.014 kb on - strand, within DVU2772at 2880.222 kb on - strand, within DVU2772at 2880.250 kb on - strand, within DVU2772at 2880.260 kb on - strand, within DVU2772at 2880.299 kb on + strand, within DVU2772at 2880.374 kb on - strandat 2880.374 kb on - strandat 2880.429 kb on - strandat 2880.435 kb on + strandat 2880.523 kb on - strandat 2880.589 kb on - strandat 2880.643 kb on - strandat 2880.643 kb on - strandat 2880.645 kb on - strandat 2880.645 kb on - strandat 2880.724 kb on - strandat 2880.732 kb on + strandat 2880.740 kb on - strandat 2880.755 kb on - strandat 2880.776 kb on + strandat 2880.997 kb on + strand, within DVU2773at 2881.015 kb on + strand, within DVU2773at 2881.015 kb on + strand, within DVU2773at 2881.023 kb on - strand, within DVU2773at 2881.023 kb on - strand, within DVU2773at 2881.081 kb on - strand, within DVU2773at 2881.100 kb on + strand, within DVU2773at 2881.108 kb on - strand, within DVU2773at 2881.148 kb on - strand, within DVU2773at 2881.155 kb on - strand, within DVU2773at 2881.208 kb on - strand, within DVU2773at 2881.246 kb on + strand, within DVU2773at 2881.276 kb on - strand, within DVU2773at 2881.337 kb on + strand, within DVU2773at 2881.338 kb on + strand, within DVU2773at 2881.402 kb on - strand, within DVU2773at 2881.549 kb on - strandat 2881.571 kb on + strandat 2881.605 kb on - strandat 2881.651 kb on - strandat 2881.747 kb on + strandat 2881.779 kb on + strand, within DVU2774at 2881.793 kb on - strand, within DVU2774at 2881.832 kb on - strand, within DVU2774at 2882.050 kb on + strand, within DVU2774at 2882.174 kb on - strand, within DVU2774at 2882.225 kb on + strand, within DVU2774at 2882.252 kb on + strand, within DVU2774at 2882.340 kb on + strandat 2882.343 kb on - strandat 2882.345 kb on - strandat 2882.396 kb on + strandat 2882.444 kb on + strandat 2882.444 kb on + strandat 2882.444 kb on + strandat 2882.452 kb on - strandat 2882.521 kb on + strandat 2882.547 kb on + strandat 2882.557 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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2,879,721 - DVU2772 0.43 +1.7
2,879,721 - DVU2772 0.43 +0.0
2,879,729 + DVU2772 0.44 -0.0
2,879,729 + DVU2772 0.44 -1.7
2,879,737 - DVU2772 0.45 +0.3
2,879,745 + DVU2772 0.45 -1.6
2,879,745 + DVU2772 0.45 -0.0
2,879,767 - DVU2772 0.47 -0.3
2,879,768 + DVU2772 0.47 -0.2
2,879,785 + DVU2772 0.48 -0.6
2,879,785 - DVU2772 0.48 -0.4
2,879,908 - DVU2772 0.57 +0.1
2,879,918 - DVU2772 0.58 +0.2
2,879,950 + DVU2772 0.61 -1.0
2,879,980 + DVU2772 0.63 -0.0
2,880,014 - DVU2772 0.65 +0.0
2,880,222 - DVU2772 0.81 -0.4
2,880,250 - DVU2772 0.83 +0.3
2,880,260 - DVU2772 0.84 +0.1
2,880,299 + DVU2772 0.87 -0.0
2,880,374 - -0.1
2,880,374 - +0.8
2,880,429 - +0.1
2,880,435 + +1.1
2,880,523 - -0.2
2,880,589 - -0.4
2,880,643 - -2.8
2,880,643 - -0.0
2,880,645 - +0.2
2,880,645 - +0.0
2,880,724 - +0.2
2,880,732 + -1.6
2,880,740 - -1.1
2,880,755 - -0.1
2,880,776 + -0.1
2,880,997 + DVU2773 0.33 +0.4
2,881,015 + DVU2773 0.35 +0.0
2,881,015 + DVU2773 0.35 +0.1
2,881,023 - DVU2773 0.36 -0.5
2,881,023 - DVU2773 0.36 -1.0
2,881,081 - DVU2773 0.43 -0.7
2,881,100 + DVU2773 0.45 +0.2
2,881,108 - DVU2773 0.46 +0.2
2,881,148 - DVU2773 0.51 -2.0
2,881,155 - DVU2773 0.51 -1.1
2,881,208 - DVU2773 0.58 +0.0
2,881,246 + DVU2773 0.62 -0.2
2,881,276 - DVU2773 0.65 +0.2
2,881,337 + DVU2773 0.72 +1.5
2,881,338 + DVU2773 0.73 +1.4
2,881,402 - DVU2773 0.80 -0.4
2,881,549 - -0.1
2,881,571 + +1.1
2,881,605 - -0.4
2,881,651 - -1.1
2,881,747 + +0.8
2,881,779 + DVU2774 0.11 +1.1
2,881,793 - DVU2774 0.13 +0.3
2,881,832 - DVU2774 0.19 -0.1
2,882,050 + DVU2774 0.51 +1.1
2,882,174 - DVU2774 0.69 +1.1
2,882,225 + DVU2774 0.76 +0.9
2,882,252 + DVU2774 0.80 +1.0
2,882,340 + +1.2
2,882,343 - +0.3
2,882,345 - +0.2
2,882,396 + -0.8
2,882,444 + -0.4
2,882,444 + -2.3
2,882,444 + -0.5
2,882,452 - +0.2
2,882,521 + -0.2
2,882,547 + -0.3
2,882,557 + -0.5

Or see this region's nucleotide sequence