Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2432

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2428 and DVU2429 are separated by 226 nucleotidesDVU2429 and DVU2430 overlap by 4 nucleotidesDVU2430 and DVU2431 are separated by 88 nucleotidesDVU2431 and DVU2432 are separated by 23 nucleotidesDVU2432 and DVU2434 are separated by 338 nucleotides DVU2428: DVU2428 - lipoprotein, putative (TIGR), at 2,532,467 to 2,532,925 DVU2428 DVU2429: DVU2429 - hypothetical protein (TIGR), at 2,533,152 to 2,533,262 DVU2429 DVU2430: DVU2430 - RNA-binding protein (TIGR), at 2,533,259 to 2,533,525 DVU2430 DVU2431: DVU2431 - hypothetical protein (TIGR), at 2,533,614 to 2,533,763 DVU2431 DVU2432: DVU2432 - sensory box/GGDEF domain/EAL domain protein (TIGR), at 2,533,787 to 2,538,028 DVU2432 DVU2434: DVU2434 - hypothetical protein (TIGR), at 2,538,367 to 2,538,774 DVU2434 Position (kb) 2533 2534 2535 2536 2537 2538 2539Strain fitness (log2 ratio) -2 -1 0 1 2at 2532.795 kb on - strand, within DVU2428at 2532.808 kb on - strand, within DVU2428at 2532.808 kb on - strand, within DVU2428at 2532.819 kb on + strand, within DVU2428at 2532.864 kb on - strand, within DVU2428at 2532.886 kb on - strandat 2532.966 kb on + strandat 2532.966 kb on + strandat 2533.002 kb on + strandat 2533.010 kb on - strandat 2533.077 kb on - strandat 2533.127 kb on - strandat 2533.138 kb on + strandat 2533.252 kb on - strandat 2533.397 kb on + strand, within DVU2430at 2533.412 kb on - strand, within DVU2430at 2533.438 kb on + strand, within DVU2430at 2533.444 kb on - strand, within DVU2430at 2533.451 kb on - strand, within DVU2430at 2533.477 kb on + strand, within DVU2430at 2533.493 kb on + strand, within DVU2430at 2533.616 kb on + strandat 2533.701 kb on + strand, within DVU2431at 2533.701 kb on + strand, within DVU2431at 2533.707 kb on + strand, within DVU2431at 2533.707 kb on + strand, within DVU2431at 2533.709 kb on - strand, within DVU2431at 2533.709 kb on - strand, within DVU2431at 2533.721 kb on - strand, within DVU2431at 2533.768 kb on - strandat 2533.801 kb on - strandat 2533.816 kb on - strandat 2533.823 kb on - strandat 2533.829 kb on + strandat 2533.884 kb on - strandat 2533.886 kb on - strandat 2533.890 kb on + strandat 2533.957 kb on + strandat 2534.050 kb on - strandat 2534.175 kb on - strandat 2534.175 kb on - strandat 2534.192 kb on + strandat 2534.192 kb on + strandat 2534.202 kb on + strandat 2534.210 kb on - strandat 2534.229 kb on + strand, within DVU2432at 2534.249 kb on - strand, within DVU2432at 2534.303 kb on - strand, within DVU2432at 2534.350 kb on - strand, within DVU2432at 2534.526 kb on - strand, within DVU2432at 2534.538 kb on - strand, within DVU2432at 2534.635 kb on + strand, within DVU2432at 2534.643 kb on - strand, within DVU2432at 2534.656 kb on - strand, within DVU2432at 2534.658 kb on + strand, within DVU2432at 2534.850 kb on + strand, within DVU2432at 2534.882 kb on - strand, within DVU2432at 2534.910 kb on + strand, within DVU2432at 2535.086 kb on - strand, within DVU2432at 2535.147 kb on + strand, within DVU2432at 2535.173 kb on - strand, within DVU2432at 2535.184 kb on + strand, within DVU2432at 2535.198 kb on - strand, within DVU2432at 2535.247 kb on + strand, within DVU2432at 2535.248 kb on + strand, within DVU2432at 2535.364 kb on + strand, within DVU2432at 2535.384 kb on + strand, within DVU2432at 2535.424 kb on + strand, within DVU2432at 2535.473 kb on + strand, within DVU2432at 2535.478 kb on + strand, within DVU2432at 2535.590 kb on + strand, within DVU2432at 2535.625 kb on + strand, within DVU2432at 2535.625 kb on + strand, within DVU2432at 2535.774 kb on - strand, within DVU2432at 2535.774 kb on - strand, within DVU2432at 2535.779 kb on - strand, within DVU2432at 2536.004 kb on - strand, within DVU2432at 2536.095 kb on + strand, within DVU2432at 2536.137 kb on + strand, within DVU2432at 2536.208 kb on - strand, within DVU2432at 2536.210 kb on + strand, within DVU2432at 2536.241 kb on - strand, within DVU2432at 2536.258 kb on + strand, within DVU2432at 2536.258 kb on + strand, within DVU2432at 2536.266 kb on - strand, within DVU2432at 2536.266 kb on - strand, within DVU2432at 2536.266 kb on - strand, within DVU2432at 2536.306 kb on - strand, within DVU2432at 2536.306 kb on - strand, within DVU2432at 2536.398 kb on - strand, within DVU2432at 2536.415 kb on - strand, within DVU2432at 2536.421 kb on + strand, within DVU2432at 2536.530 kb on + strand, within DVU2432at 2536.530 kb on + strand, within DVU2432at 2536.538 kb on - strand, within DVU2432at 2536.538 kb on - strand, within DVU2432at 2536.581 kb on - strand, within DVU2432at 2536.615 kb on + strand, within DVU2432at 2536.615 kb on + strand, within DVU2432at 2536.623 kb on - strand, within DVU2432at 2536.623 kb on - strand, within DVU2432at 2536.717 kb on + strand, within DVU2432at 2536.720 kb on - strand, within DVU2432at 2536.722 kb on + strand, within DVU2432at 2536.725 kb on - strand, within DVU2432at 2536.725 kb on - strand, within DVU2432at 2536.730 kb on - strand, within DVU2432at 2536.756 kb on - strand, within DVU2432at 2536.799 kb on + strand, within DVU2432at 2536.819 kb on + strand, within DVU2432at 2536.867 kb on + strand, within DVU2432at 2536.901 kb on - strand, within DVU2432at 2536.901 kb on - strand, within DVU2432at 2536.990 kb on - strand, within DVU2432at 2537.078 kb on - strand, within DVU2432at 2537.151 kb on - strand, within DVU2432at 2537.167 kb on + strand, within DVU2432at 2537.175 kb on - strand, within DVU2432at 2537.175 kb on - strand, within DVU2432at 2537.255 kb on - strand, within DVU2432at 2537.279 kb on - strand, within DVU2432at 2537.331 kb on + strand, within DVU2432at 2537.422 kb on + strand, within DVU2432at 2537.489 kb on - strand, within DVU2432at 2537.492 kb on + strand, within DVU2432at 2537.515 kb on - strand, within DVU2432at 2537.515 kb on - strand, within DVU2432at 2537.541 kb on - strand, within DVU2432at 2537.541 kb on - strand, within DVU2432at 2537.541 kb on - strand, within DVU2432at 2537.661 kb on + strandat 2537.736 kb on - strandat 2537.781 kb on - strandat 2537.874 kb on + strandat 2537.874 kb on - strandat 2537.908 kb on - strandat 2537.971 kb on + strandat 2538.001 kb on + strandat 2538.038 kb on + strandat 2538.140 kb on + strandat 2538.209 kb on - strandat 2538.263 kb on - strandat 2538.306 kb on - strandat 2538.317 kb on + strandat 2538.367 kb on - strandat 2538.442 kb on + strand, within DVU2434at 2538.473 kb on - strand, within DVU2434at 2538.518 kb on + strand, within DVU2434at 2538.523 kb on + strand, within DVU2434at 2538.523 kb on + strand, within DVU2434at 2538.526 kb on - strand, within DVU2434at 2538.612 kb on - strand, within DVU2434at 2538.682 kb on + strand, within DVU2434at 2538.697 kb on - strand, within DVU2434at 2538.764 kb on + strandat 2538.787 kb on - strandat 2538.798 kb on - strandat 2538.837 kb on + strandat 2538.845 kb on - strandat 2538.845 kb on - strandat 2538.845 kb on - strandat 2538.850 kb on - strandat 2538.850 kb on - strandat 2538.911 kb on + strandat 2538.937 kb on + strandat 2538.985 kb on + strandat 2539.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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2,532,795 - DVU2428 0.71 -1.0
2,532,808 - DVU2428 0.74 -0.9
2,532,808 - DVU2428 0.74 -1.6
2,532,819 + DVU2428 0.77 -0.9
2,532,864 - DVU2428 0.86 -0.7
2,532,886 - -0.7
2,532,966 + -0.2
2,532,966 + -0.2
2,533,002 + -0.1
2,533,010 - -0.1
2,533,077 - -0.9
2,533,127 - -0.3
2,533,138 + +0.3
2,533,252 - -1.1
2,533,397 + DVU2430 0.52 -0.3
2,533,412 - DVU2430 0.57 +0.9
2,533,438 + DVU2430 0.67 -0.2
2,533,444 - DVU2430 0.69 -0.7
2,533,451 - DVU2430 0.72 -0.1
2,533,477 + DVU2430 0.82 -2.3
2,533,493 + DVU2430 0.88 +0.2
2,533,616 + +0.6
2,533,701 + DVU2431 0.58 -1.1
2,533,701 + DVU2431 0.58 -0.3
2,533,707 + DVU2431 0.62 +0.1
2,533,707 + DVU2431 0.62 +0.4
2,533,709 - DVU2431 0.63 -0.5
2,533,709 - DVU2431 0.63 +0.2
2,533,721 - DVU2431 0.71 +0.3
2,533,768 - -0.0
2,533,801 - -0.2
2,533,816 - +0.6
2,533,823 - -0.4
2,533,829 + -0.4
2,533,884 - +0.4
2,533,886 - -0.1
2,533,890 + +0.9
2,533,957 + +0.2
2,534,050 - -0.6
2,534,175 - -0.3
2,534,175 - +1.0
2,534,192 + -0.9
2,534,192 + +0.2
2,534,202 + +0.1
2,534,210 - -0.3
2,534,229 + DVU2432 0.10 +0.3
2,534,249 - DVU2432 0.11 -1.1
2,534,303 - DVU2432 0.12 -0.0
2,534,350 - DVU2432 0.13 -0.4
2,534,526 - DVU2432 0.17 +0.5
2,534,538 - DVU2432 0.18 +0.6
2,534,635 + DVU2432 0.20 +1.8
2,534,643 - DVU2432 0.20 -0.3
2,534,656 - DVU2432 0.20 +0.3
2,534,658 + DVU2432 0.21 +0.5
2,534,850 + DVU2432 0.25 -0.3
2,534,882 - DVU2432 0.26 +0.9
2,534,910 + DVU2432 0.26 -0.0
2,535,086 - DVU2432 0.31 +1.2
2,535,147 + DVU2432 0.32 +0.1
2,535,173 - DVU2432 0.33 +0.0
2,535,184 + DVU2432 0.33 +0.1
2,535,198 - DVU2432 0.33 +0.3
2,535,247 + DVU2432 0.34 +0.9
2,535,248 + DVU2432 0.34 +0.3
2,535,364 + DVU2432 0.37 +1.2
2,535,384 + DVU2432 0.38 -0.6
2,535,424 + DVU2432 0.39 -0.3
2,535,473 + DVU2432 0.40 +0.7
2,535,478 + DVU2432 0.40 +0.1
2,535,590 + DVU2432 0.43 +0.4
2,535,625 + DVU2432 0.43 -0.5
2,535,625 + DVU2432 0.43 +0.1
2,535,774 - DVU2432 0.47 -0.1
2,535,774 - DVU2432 0.47 -0.5
2,535,779 - DVU2432 0.47 +0.6
2,536,004 - DVU2432 0.52 -0.8
2,536,095 + DVU2432 0.54 +1.8
2,536,137 + DVU2432 0.55 +0.0
2,536,208 - DVU2432 0.57 +0.8
2,536,210 + DVU2432 0.57 +0.1
2,536,241 - DVU2432 0.58 -0.5
2,536,258 + DVU2432 0.58 -1.8
2,536,258 + DVU2432 0.58 +0.1
2,536,266 - DVU2432 0.58 -0.1
2,536,266 - DVU2432 0.58 -0.2
2,536,266 - DVU2432 0.58 -1.8
2,536,306 - DVU2432 0.59 +0.1
2,536,306 - DVU2432 0.59 -0.1
2,536,398 - DVU2432 0.62 +2.5
2,536,415 - DVU2432 0.62 +1.0
2,536,421 + DVU2432 0.62 -0.9
2,536,530 + DVU2432 0.65 +0.0
2,536,530 + DVU2432 0.65 +0.2
2,536,538 - DVU2432 0.65 -0.4
2,536,538 - DVU2432 0.65 -1.6
2,536,581 - DVU2432 0.66 +0.1
2,536,615 + DVU2432 0.67 +0.0
2,536,615 + DVU2432 0.67 +0.1
2,536,623 - DVU2432 0.67 +0.1
2,536,623 - DVU2432 0.67 -0.3
2,536,717 + DVU2432 0.69 -1.0
2,536,720 - DVU2432 0.69 -0.1
2,536,722 + DVU2432 0.69 +0.0
2,536,725 - DVU2432 0.69 +0.2
2,536,725 - DVU2432 0.69 -0.2
2,536,730 - DVU2432 0.69 -0.1
2,536,756 - DVU2432 0.70 +0.8
2,536,799 + DVU2432 0.71 +0.1
2,536,819 + DVU2432 0.71 -0.1
2,536,867 + DVU2432 0.73 +0.6
2,536,901 - DVU2432 0.73 +0.1
2,536,901 - DVU2432 0.73 -0.9
2,536,990 - DVU2432 0.76 +0.1
2,537,078 - DVU2432 0.78 +0.5
2,537,151 - DVU2432 0.79 +0.1
2,537,167 + DVU2432 0.80 +0.1
2,537,175 - DVU2432 0.80 +0.7
2,537,175 - DVU2432 0.80 +0.4
2,537,255 - DVU2432 0.82 -0.3
2,537,279 - DVU2432 0.82 +1.0
2,537,331 + DVU2432 0.84 +0.1
2,537,422 + DVU2432 0.86 -0.1
2,537,489 - DVU2432 0.87 +0.2
2,537,492 + DVU2432 0.87 -0.0
2,537,515 - DVU2432 0.88 -0.1
2,537,515 - DVU2432 0.88 +0.2
2,537,541 - DVU2432 0.88 +0.1
2,537,541 - DVU2432 0.88 -1.3
2,537,541 - DVU2432 0.88 -2.3
2,537,661 + -0.9
2,537,736 - -0.2
2,537,781 - +0.6
2,537,874 + -1.6
2,537,874 - -1.1
2,537,908 - -0.1
2,537,971 + +0.1
2,538,001 + +0.3
2,538,038 + -0.6
2,538,140 + -1.0
2,538,209 - -1.0
2,538,263 - +0.3
2,538,306 - -0.2
2,538,317 + -0.3
2,538,367 - -0.7
2,538,442 + DVU2434 0.18 -0.5
2,538,473 - DVU2434 0.26 -0.9
2,538,518 + DVU2434 0.37 -0.2
2,538,523 + DVU2434 0.38 -1.2
2,538,523 + DVU2434 0.38 -0.6
2,538,526 - DVU2434 0.39 -0.4
2,538,612 - DVU2434 0.60 -1.4
2,538,682 + DVU2434 0.77 -0.6
2,538,697 - DVU2434 0.81 -0.2
2,538,764 + -0.4
2,538,787 - -1.3
2,538,798 - -1.6
2,538,837 + -0.7
2,538,845 - -0.5
2,538,845 - -0.8
2,538,845 - -0.0
2,538,850 - -0.8
2,538,850 - -1.2
2,538,911 + -0.7
2,538,937 + +0.2
2,538,985 + +0.4
2,539,018 - +0.2

Or see this region's nucleotide sequence