Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2107

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflrC and DVU2107 are separated by 357 nucleotidesDVU2107 and DVU2108 overlap by 10 nucleotidesDVU2108 and mrp overlap by 4 nucleotides DVU2106: flrC - sigma-54 dependent transcriptional regulator (TIGR), at 2,200,357 to 2,201,733 flrC DVU2107: DVU2107 - hypothetical protein (TIGR), at 2,202,091 to 2,202,501 DVU2107 DVU2108: DVU2108 - MTH1175-like domain family protein (TIGR), at 2,202,492 to 2,202,851 DVU2108 DVU2109: mrp - MTH1175-like domain family protein (TIGR), at 2,202,848 to 2,204,311 mrp Position (kb) 2202 2203Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2201.800 kb on - strandat 2201.800 kb on - strandat 2201.814 kb on + strandat 2201.855 kb on - strandat 2202.073 kb on - strandat 2202.081 kb on + strandat 2202.097 kb on + strandat 2202.197 kb on + strand, within DVU2107at 2202.197 kb on + strand, within DVU2107at 2202.205 kb on - strand, within DVU2107at 2202.205 kb on - strand, within DVU2107at 2202.252 kb on + strand, within DVU2107at 2202.252 kb on + strand, within DVU2107at 2202.274 kb on - strand, within DVU2107at 2202.340 kb on - strand, within DVU2107at 2202.413 kb on - strand, within DVU2107at 2202.413 kb on - strand, within DVU2107at 2202.429 kb on + strand, within DVU2107at 2202.889 kb on + strandat 2203.048 kb on + strand, within mrpat 2203.079 kb on - strand, within mrpat 2203.102 kb on - strand, within mrpat 2203.131 kb on + strand, within mrpat 2203.202 kb on - strand, within mrpat 2203.301 kb on + strand, within mrpat 2203.317 kb on + strand, within mrpat 2203.361 kb on - strand, within mrpat 2203.398 kb on + strand, within mrp

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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2,201,800 - +0.1
2,201,800 - +0.1
2,201,814 + -0.0
2,201,855 - +0.2
2,202,073 - -2.1
2,202,081 + -1.6
2,202,097 + -1.8
2,202,197 + DVU2107 0.26 -1.8
2,202,197 + DVU2107 0.26 -2.5
2,202,205 - DVU2107 0.28 -1.5
2,202,205 - DVU2107 0.28 -1.1
2,202,252 + DVU2107 0.39 -1.2
2,202,252 + DVU2107 0.39 -1.5
2,202,274 - DVU2107 0.45 -1.2
2,202,340 - DVU2107 0.61 -1.5
2,202,413 - DVU2107 0.78 -2.5
2,202,413 - DVU2107 0.78 -1.5
2,202,429 + DVU2107 0.82 -1.3
2,202,889 + -2.6
2,203,048 + mrp DVU2109 0.14 -3.8
2,203,079 - mrp DVU2109 0.16 -2.8
2,203,102 - mrp DVU2109 0.17 -4.7
2,203,131 + mrp DVU2109 0.19 -1.3
2,203,202 - mrp DVU2109 0.24 -0.8
2,203,301 + mrp DVU2109 0.31 -2.3
2,203,317 + mrp DVU2109 0.32 -2.7
2,203,361 - mrp DVU2109 0.35 -3.0
2,203,398 + mrp DVU2109 0.38 -4.6

Or see this region's nucleotide sequence