Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1821

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsecD and yajC are separated by 130 nucleotidesyajC and gltB are separated by 500 nucleotidesgltB and DVU1822 are separated by 2 nucleotides DVU1819: secD - protein-export membrane protein SecD (TIGR), at 1,883,311 to 1,884,909 secD DVU1820: yajC - preprotein translocase, YajC subunit (TIGR), at 1,885,040 to 1,885,405 yajC DVU1821: gltB - glutamate synthase, large subunit (VIMSS_AUTO), at 1,885,906 to 1,886,661 gltB DVU1822: DVU1822 - glutamate synthase, amidotransferase subunit, putative (TIGR), at 1,886,664 to 1,887,758 DVU1822 Position (kb) 1885 1886 1887Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1885.057 kb on + strandat 1885.064 kb on + strandat 1885.505 kb on + strandat 1885.522 kb on + strandat 1885.530 kb on - strandat 1885.750 kb on - strandat 1885.750 kb on - strandat 1886.025 kb on - strand, within gltBat 1886.065 kb on + strand, within gltBat 1886.070 kb on + strand, within gltBat 1886.121 kb on - strand, within gltBat 1886.147 kb on + strand, within gltBat 1886.265 kb on - strand, within gltBat 1886.357 kb on - strand, within gltBat 1886.430 kb on - strand, within gltBat 1886.437 kb on - strand, within gltBat 1886.441 kb on + strand, within gltBat 1886.441 kb on + strand, within gltBat 1886.442 kb on - strand, within gltBat 1886.449 kb on - strand, within gltBat 1886.449 kb on - strand, within gltBat 1886.449 kb on - strand, within gltBat 1886.469 kb on + strand, within gltBat 1886.476 kb on + strand, within gltBat 1886.708 kb on + strandat 1886.708 kb on + strandat 1886.716 kb on - strandat 1886.716 kb on - strandat 1886.874 kb on + strand, within DVU1822at 1886.882 kb on - strand, within DVU1822at 1886.884 kb on + strand, within DVU1822at 1887.037 kb on + strand, within DVU1822at 1887.133 kb on + strand, within DVU1822at 1887.138 kb on + strand, within DVU1822at 1887.198 kb on + strand, within DVU1822at 1887.198 kb on + strand, within DVU1822at 1887.352 kb on - strand, within DVU1822at 1887.381 kb on - strand, within DVU1822at 1887.399 kb on + strand, within DVU1822at 1887.431 kb on + strand, within DVU1822at 1887.487 kb on + strand, within DVU1822at 1887.566 kb on + strand, within DVU1822at 1887.566 kb on + strand, within DVU1822at 1887.572 kb on - strand, within DVU1822at 1887.622 kb on + strand, within DVU1822

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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1,885,057 + -1.1
1,885,064 + -1.0
1,885,505 + -0.2
1,885,522 + +0.0
1,885,530 - -0.4
1,885,750 - -0.3
1,885,750 - -0.0
1,886,025 - gltB DVU1821 0.16 -5.5
1,886,065 + gltB DVU1821 0.21 -3.6
1,886,070 + gltB DVU1821 0.22 -1.3
1,886,121 - gltB DVU1821 0.28 -4.3
1,886,147 + gltB DVU1821 0.32 -2.7
1,886,265 - gltB DVU1821 0.47 -4.6
1,886,357 - gltB DVU1821 0.60 -3.6
1,886,430 - gltB DVU1821 0.69 -4.8
1,886,437 - gltB DVU1821 0.70 -4.4
1,886,441 + gltB DVU1821 0.71 -4.0
1,886,441 + gltB DVU1821 0.71 -2.5
1,886,442 - gltB DVU1821 0.71 -4.1
1,886,449 - gltB DVU1821 0.72 -3.2
1,886,449 - gltB DVU1821 0.72 -4.0
1,886,449 - gltB DVU1821 0.72 -5.1
1,886,469 + gltB DVU1821 0.74 -4.1
1,886,476 + gltB DVU1821 0.75 -2.8
1,886,708 + -4.7
1,886,708 + -1.4
1,886,716 - -4.4
1,886,716 - -4.0
1,886,874 + DVU1822 0.19 -2.3
1,886,882 - DVU1822 0.20 -2.1
1,886,884 + DVU1822 0.20 -4.6
1,887,037 + DVU1822 0.34 -4.6
1,887,133 + DVU1822 0.43 -3.6
1,887,138 + DVU1822 0.43 -5.1
1,887,198 + DVU1822 0.49 -3.9
1,887,198 + DVU1822 0.49 -3.3
1,887,352 - DVU1822 0.63 -3.5
1,887,381 - DVU1822 0.65 -4.6
1,887,399 + DVU1822 0.67 -3.1
1,887,431 + DVU1822 0.70 -4.4
1,887,487 + DVU1822 0.75 -5.2
1,887,566 + DVU1822 0.82 -3.3
1,887,566 + DVU1822 0.82 -3.9
1,887,572 - DVU1822 0.83 -1.2
1,887,622 + DVU1822 0.87 -4.3

Or see this region's nucleotide sequence