Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19020 and RALBFv3_RS19025 are separated by 238 nucleotides RALBFv3_RS19025 and RALBFv3_RS19030 are separated by 97 nucleotides
RALBFv3_RS19020: RALBFv3_RS19020 - AraC family transcriptional regulator, at 834,308 to 835,267
_RS19020
RALBFv3_RS19025: RALBFv3_RS19025 - hypothetical protein, at 835,506 to 837,665
_RS19025
RALBFv3_RS19030: RALBFv3_RS19030 - ABC transporter ATP-binding protein, at 837,763 to 839,586
_RS19030
Position (kb) 835
836
837
838 Strain fitness (log2 ratio) -2
-1
0
1
2 at 834.593 kb on + strand, within RALBFv3_RS19020 at 834.594 kb on - strand, within RALBFv3_RS19020 at 834.594 kb on - strand, within RALBFv3_RS19020 at 834.966 kb on + strand, within RALBFv3_RS19020 at 834.966 kb on + strand, within RALBFv3_RS19020 at 834.967 kb on - strand, within RALBFv3_RS19020 at 835.917 kb on + strand, within RALBFv3_RS19025 at 835.918 kb on - strand, within RALBFv3_RS19025 at 836.051 kb on + strand, within RALBFv3_RS19025 at 836.163 kb on + strand, within RALBFv3_RS19025 at 836.352 kb on + strand, within RALBFv3_RS19025 at 836.352 kb on + strand, within RALBFv3_RS19025 at 836.352 kb on + strand, within RALBFv3_RS19025 at 836.352 kb on + strand, within RALBFv3_RS19025 at 836.428 kb on - strand, within RALBFv3_RS19025 at 836.451 kb on + strand, within RALBFv3_RS19025 at 836.451 kb on + strand, within RALBFv3_RS19025 at 836.451 kb on + strand, within RALBFv3_RS19025 at 836.452 kb on - strand, within RALBFv3_RS19025 at 836.550 kb on + strand, within RALBFv3_RS19025 at 836.651 kb on - strand, within RALBFv3_RS19025 at 836.685 kb on + strand, within RALBFv3_RS19025 at 836.685 kb on + strand, within RALBFv3_RS19025 at 836.686 kb on - strand, within RALBFv3_RS19025 at 836.686 kb on - strand, within RALBFv3_RS19025 at 836.992 kb on - strand, within RALBFv3_RS19025 at 836.992 kb on - strand, within RALBFv3_RS19025 at 837.300 kb on + strand, within RALBFv3_RS19025 at 837.344 kb on - strand, within RALBFv3_RS19025 at 837.450 kb on + strand at 837.451 kb on - strand at 837.546 kb on + strand at 837.547 kb on - strand at 837.547 kb on - strand at 837.547 kb on - strand at 837.547 kb on - strand at 837.550 kb on + strand at 837.551 kb on - strand at 837.582 kb on + strand at 837.582 kb on + strand at 837.583 kb on - strand at 837.660 kb on + strand at 837.674 kb on + strand at 837.890 kb on + strand at 837.997 kb on + strand, within RALBFv3_RS19030 at 837.998 kb on - strand, within RALBFv3_RS19030 at 837.998 kb on - strand, within RALBFv3_RS19030 at 837.998 kb on - strand, within RALBFv3_RS19030 at 837.998 kb on - strand, within RALBFv3_RS19030 at 838.349 kb on - strand, within RALBFv3_RS19030 at 838.450 kb on + strand, within RALBFv3_RS19030 at 838.470 kb on + strand, within RALBFv3_RS19030 at 838.471 kb on + strand, within RALBFv3_RS19030 at 838.471 kb on + strand, within RALBFv3_RS19030
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days remove 834,593 + RALBFv3_RS19020 0.30 -0.9 834,594 - RALBFv3_RS19020 0.30 +0.5 834,594 - RALBFv3_RS19020 0.30 -1.2 834,966 + RALBFv3_RS19020 0.69 -0.2 834,966 + RALBFv3_RS19020 0.69 +1.1 834,967 - RALBFv3_RS19020 0.69 +0.9 835,917 + RALBFv3_RS19025 0.19 +0.2 835,918 - RALBFv3_RS19025 0.19 -1.3 836,051 + RALBFv3_RS19025 0.25 -1.8 836,163 + RALBFv3_RS19025 0.30 +2.5 836,352 + RALBFv3_RS19025 0.39 +1.2 836,352 + RALBFv3_RS19025 0.39 -0.5 836,352 + RALBFv3_RS19025 0.39 -1.0 836,352 + RALBFv3_RS19025 0.39 -1.9 836,428 - RALBFv3_RS19025 0.43 -0.3 836,451 + RALBFv3_RS19025 0.44 +0.2 836,451 + RALBFv3_RS19025 0.44 +0.7 836,451 + RALBFv3_RS19025 0.44 -0.7 836,452 - RALBFv3_RS19025 0.44 +2.2 836,550 + RALBFv3_RS19025 0.48 -1.0 836,651 - RALBFv3_RS19025 0.53 -1.1 836,685 + RALBFv3_RS19025 0.55 -2.0 836,685 + RALBFv3_RS19025 0.55 +0.1 836,686 - RALBFv3_RS19025 0.55 -0.5 836,686 - RALBFv3_RS19025 0.55 -0.0 836,992 - RALBFv3_RS19025 0.69 -0.8 836,992 - RALBFv3_RS19025 0.69 -0.3 837,300 + RALBFv3_RS19025 0.83 -1.3 837,344 - RALBFv3_RS19025 0.85 +1.5 837,450 + +1.1 837,451 - +0.0 837,546 + +0.0 837,547 - -0.2 837,547 - +1.1 837,547 - +1.5 837,547 - -0.2 837,550 + -0.5 837,551 - +1.1 837,582 + -0.9 837,582 + -0.5 837,583 - +1.1 837,660 + +0.1 837,674 + +0.0 837,890 + +0.2 837,997 + RALBFv3_RS19030 0.13 -0.1 837,998 - RALBFv3_RS19030 0.13 -1.0 837,998 - RALBFv3_RS19030 0.13 +0.7 837,998 - RALBFv3_RS19030 0.13 +1.3 837,998 - RALBFv3_RS19030 0.13 -0.5 838,349 - RALBFv3_RS19030 0.32 +0.3 838,450 + RALBFv3_RS19030 0.38 -0.1 838,470 + RALBFv3_RS19030 0.39 -0.0 838,471 + RALBFv3_RS19030 0.39 +0.0 838,471 + RALBFv3_RS19030 0.39 -0.0
Or see this region's nucleotide sequence