Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15775

Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15770 and RALBFv3_RS15775 are separated by 93 nucleotidesRALBFv3_RS15775 and RALBFv3_RS15780 are separated by 41 nucleotidesRALBFv3_RS15780 and RALBFv3_RS15785 are separated by 3 nucleotidesRALBFv3_RS15785 and RALBFv3_RS15790 are separated by 25 nucleotides RALBFv3_RS15770: RALBFv3_RS15770 - asparaginase, at 3,437,134 to 3,438,129 _RS15770 RALBFv3_RS15775: RALBFv3_RS15775 - 30S ribosomal protein S6, at 3,438,223 to 3,438,591 _RS15775 RALBFv3_RS15780: RALBFv3_RS15780 - primosomal replication protein N, at 3,438,633 to 3,438,959 _RS15780 RALBFv3_RS15785: RALBFv3_RS15785 - 30S ribosomal protein S18, at 3,438,963 to 3,439,250 _RS15785 RALBFv3_RS15790: RALBFv3_RS15790 - 50S ribosomal protein L9, at 3,439,276 to 3,439,728 _RS15790 Position (kb) 3438 3439Strain fitness (log2 ratio) -2 -1 0 1at 3437.720 kb on - strand, within RALBFv3_RS15770at 3438.038 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
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3,437,720 - RALBFv3_RS15770 0.59 -0.1
3,438,038 - -2.6

Or see this region's nucleotide sequence