Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS07700 and RALBFv3_RS07705 are separated by 52 nucleotides RALBFv3_RS07705 and RALBFv3_RS07710 overlap by 4 nucleotides RALBFv3_RS07710 and RALBFv3_RS07715 overlap by 20 nucleotides RALBFv3_RS07715 and RALBFv3_RS07720 are separated by 1 nucleotides
RALBFv3_RS07700: RALBFv3_RS07700 - type II secretion system protein GspG, at 1,690,062 to 1,690,532
_RS07700
RALBFv3_RS07705: RALBFv3_RS07705 - type II secretion system protein GspH, at 1,690,585 to 1,691,082
_RS07705
RALBFv3_RS07710: RALBFv3_RS07710 - type II secretion system protein GspI, at 1,691,079 to 1,691,477
_RS07710
RALBFv3_RS07715: RALBFv3_RS07715 - general secretion pathway protein GspJ, at 1,691,458 to 1,692,186
_RS07715
RALBFv3_RS07720: RALBFv3_RS07720 - general secretion pathway protein GspK, at 1,692,188 to 1,693,249
_RS07720
Position (kb) 1691
1692
1693 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1690.573 kb on + strand at 1690.573 kb on + strand at 1690.574 kb on - strand at 1691.283 kb on + strand, within RALBFv3_RS07710 at 1691.401 kb on - strand, within RALBFv3_RS07710 at 1691.401 kb on - strand, within RALBFv3_RS07710 at 1691.401 kb on - strand, within RALBFv3_RS07710 at 1691.638 kb on + strand, within RALBFv3_RS07715 at 1691.639 kb on - strand, within RALBFv3_RS07715 at 1691.639 kb on - strand, within RALBFv3_RS07715 at 1691.783 kb on - strand, within RALBFv3_RS07715 at 1691.897 kb on - strand, within RALBFv3_RS07715 at 1692.527 kb on + strand, within RALBFv3_RS07720 at 1692.527 kb on + strand, within RALBFv3_RS07720 at 1692.527 kb on + strand, within RALBFv3_RS07720 at 1692.528 kb on - strand, within RALBFv3_RS07720 at 1692.528 kb on - strand, within RALBFv3_RS07720 at 1692.528 kb on - strand, within RALBFv3_RS07720 at 1692.528 kb on - strand, within RALBFv3_RS07720 at 1692.647 kb on + strand, within RALBFv3_RS07720 at 1692.648 kb on - strand, within RALBFv3_RS07720 at 1692.852 kb on - strand, within RALBFv3_RS07720 at 1693.112 kb on + strand, within RALBFv3_RS07720 at 1693.124 kb on + strand, within RALBFv3_RS07720 at 1693.125 kb on - strand, within RALBFv3_RS07720
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days remove 1,690,573 + +0.4 1,690,573 + +0.6 1,690,574 - -1.2 1,691,283 + RALBFv3_RS07710 0.51 -1.2 1,691,401 - RALBFv3_RS07710 0.81 -0.5 1,691,401 - RALBFv3_RS07710 0.81 +0.3 1,691,401 - RALBFv3_RS07710 0.81 -0.7 1,691,638 + RALBFv3_RS07715 0.25 -0.7 1,691,639 - RALBFv3_RS07715 0.25 -0.3 1,691,639 - RALBFv3_RS07715 0.25 -0.2 1,691,783 - RALBFv3_RS07715 0.45 -0.9 1,691,897 - RALBFv3_RS07715 0.60 -1.4 1,692,527 + RALBFv3_RS07720 0.32 -0.1 1,692,527 + RALBFv3_RS07720 0.32 +0.4 1,692,527 + RALBFv3_RS07720 0.32 -1.2 1,692,528 - RALBFv3_RS07720 0.32 -0.7 1,692,528 - RALBFv3_RS07720 0.32 +0.4 1,692,528 - RALBFv3_RS07720 0.32 -0.0 1,692,528 - RALBFv3_RS07720 0.32 +0.2 1,692,647 + RALBFv3_RS07720 0.43 -1.4 1,692,648 - RALBFv3_RS07720 0.43 +1.1 1,692,852 - RALBFv3_RS07720 0.63 -0.5 1,693,112 + RALBFv3_RS07720 0.87 -0.0 1,693,124 + RALBFv3_RS07720 0.88 -2.0 1,693,125 - RALBFv3_RS07720 0.88 +1.9
Or see this region's nucleotide sequence