Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02440 and RALBFv3_RS02445 are separated by 21 nucleotides RALBFv3_RS02445 and RALBFv3_RS02450 are separated by 216 nucleotides
RALBFv3_RS02440: RALBFv3_RS02440 - cation acetate symporter, at 544,586 to 546,652
_RS02440
RALBFv3_RS02445: RALBFv3_RS02445 - acetate--CoA ligase, at 546,674 to 548,656
_RS02445
RALBFv3_RS02450: RALBFv3_RS02450 - EamA/RhaT family transporter, at 548,873 to 549,832
_RS02450
Position (kb) 546
547
548
549 Strain fitness (log2 ratio) -2
-1
0
1
2 at 545.968 kb on - strand, within RALBFv3_RS02440 at 546.250 kb on - strand, within RALBFv3_RS02440 at 546.280 kb on - strand, within RALBFv3_RS02440 at 546.304 kb on - strand, within RALBFv3_RS02440 at 546.318 kb on + strand, within RALBFv3_RS02440 at 546.429 kb on + strand, within RALBFv3_RS02440 at 546.429 kb on + strand, within RALBFv3_RS02440 at 546.477 kb on + strand at 546.477 kb on + strand at 546.478 kb on - strand at 546.478 kb on - strand at 546.478 kb on - strand at 546.507 kb on + strand at 546.508 kb on - strand at 546.583 kb on + strand at 547.092 kb on + strand, within RALBFv3_RS02445 at 547.093 kb on - strand, within RALBFv3_RS02445 at 547.093 kb on - strand, within RALBFv3_RS02445 at 547.093 kb on - strand, within RALBFv3_RS02445 at 547.164 kb on + strand, within RALBFv3_RS02445 at 547.315 kb on + strand, within RALBFv3_RS02445 at 547.316 kb on - strand, within RALBFv3_RS02445 at 547.316 kb on - strand, within RALBFv3_RS02445 at 547.394 kb on - strand, within RALBFv3_RS02445 at 547.503 kb on + strand, within RALBFv3_RS02445 at 547.503 kb on + strand, within RALBFv3_RS02445 at 547.576 kb on - strand, within RALBFv3_RS02445 at 547.695 kb on + strand, within RALBFv3_RS02445 at 547.695 kb on + strand, within RALBFv3_RS02445 at 547.696 kb on - strand, within RALBFv3_RS02445 at 547.696 kb on - strand, within RALBFv3_RS02445 at 547.696 kb on - strand, within RALBFv3_RS02445 at 547.696 kb on - strand, within RALBFv3_RS02445 at 547.851 kb on + strand, within RALBFv3_RS02445 at 547.851 kb on + strand, within RALBFv3_RS02445 at 547.852 kb on - strand, within RALBFv3_RS02445 at 548.224 kb on + strand, within RALBFv3_RS02445 at 548.226 kb on + strand, within RALBFv3_RS02445 at 548.226 kb on + strand, within RALBFv3_RS02445 at 548.227 kb on - strand, within RALBFv3_RS02445 at 548.227 kb on - strand, within RALBFv3_RS02445 at 548.227 kb on - strand, within RALBFv3_RS02445 at 548.227 kb on - strand, within RALBFv3_RS02445 at 548.227 kb on - strand, within RALBFv3_RS02445 at 548.227 kb on - strand, within RALBFv3_RS02445 at 548.227 kb on - strand, within RALBFv3_RS02445 at 548.562 kb on + strand at 548.775 kb on + strand at 548.775 kb on + strand at 548.775 kb on + strand at 548.777 kb on + strand at 548.778 kb on + strand at 548.778 kb on + strand at 548.778 kb on + strand at 548.778 kb on + strand at 548.781 kb on - strand at 549.381 kb on - strand, within RALBFv3_RS02450 at 549.438 kb on - strand, within RALBFv3_RS02450 at 549.438 kb on - strand, within RALBFv3_RS02450 at 549.439 kb on + strand, within RALBFv3_RS02450 at 549.439 kb on + strand, within RALBFv3_RS02450 at 549.439 kb on + strand, within RALBFv3_RS02450 at 549.440 kb on - strand, within RALBFv3_RS02450 at 549.546 kb on - strand, within RALBFv3_RS02450 at 549.546 kb on - strand, within RALBFv3_RS02450 at 549.579 kb on + strand, within RALBFv3_RS02450
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days remove 545,968 - RALBFv3_RS02440 0.67 -1.1 546,250 - RALBFv3_RS02440 0.81 +1.1 546,280 - RALBFv3_RS02440 0.82 -1.0 546,304 - RALBFv3_RS02440 0.83 +0.4 546,318 + RALBFv3_RS02440 0.84 -0.5 546,429 + RALBFv3_RS02440 0.89 -0.9 546,429 + RALBFv3_RS02440 0.89 -0.6 546,477 + +0.1 546,477 + -1.3 546,478 - -1.6 546,478 - -0.3 546,478 - -2.6 546,507 + +0.2 546,508 - -0.2 546,583 + -1.3 547,092 + RALBFv3_RS02445 0.21 +0.3 547,093 - RALBFv3_RS02445 0.21 +0.3 547,093 - RALBFv3_RS02445 0.21 -0.0 547,093 - RALBFv3_RS02445 0.21 -0.3 547,164 + RALBFv3_RS02445 0.25 -0.8 547,315 + RALBFv3_RS02445 0.32 +2.3 547,316 - RALBFv3_RS02445 0.32 -0.0 547,316 - RALBFv3_RS02445 0.32 +1.5 547,394 - RALBFv3_RS02445 0.36 +1.2 547,503 + RALBFv3_RS02445 0.42 -0.1 547,503 + RALBFv3_RS02445 0.42 +1.4 547,576 - RALBFv3_RS02445 0.45 -1.4 547,695 + RALBFv3_RS02445 0.51 -0.5 547,695 + RALBFv3_RS02445 0.51 -0.5 547,696 - RALBFv3_RS02445 0.52 -0.2 547,696 - RALBFv3_RS02445 0.52 +0.9 547,696 - RALBFv3_RS02445 0.52 -0.2 547,696 - RALBFv3_RS02445 0.52 -0.6 547,851 + RALBFv3_RS02445 0.59 -0.0 547,851 + RALBFv3_RS02445 0.59 -0.3 547,852 - RALBFv3_RS02445 0.59 +1.3 548,224 + RALBFv3_RS02445 0.78 -0.6 548,226 + RALBFv3_RS02445 0.78 -1.2 548,226 + RALBFv3_RS02445 0.78 +1.0 548,227 - RALBFv3_RS02445 0.78 +2.2 548,227 - RALBFv3_RS02445 0.78 +0.3 548,227 - RALBFv3_RS02445 0.78 -0.9 548,227 - RALBFv3_RS02445 0.78 +0.7 548,227 - RALBFv3_RS02445 0.78 +1.5 548,227 - RALBFv3_RS02445 0.78 +1.7 548,227 - RALBFv3_RS02445 0.78 +0.8 548,562 + -0.4 548,775 + -2.6 548,775 + -0.7 548,775 + -0.0 548,777 + -0.4 548,778 + +1.0 548,778 + -0.9 548,778 + +0.8 548,778 + -0.9 548,781 - -0.5 549,381 - RALBFv3_RS02450 0.53 +0.1 549,438 - RALBFv3_RS02450 0.59 +0.3 549,438 - RALBFv3_RS02450 0.59 +0.1 549,439 + RALBFv3_RS02450 0.59 -0.4 549,439 + RALBFv3_RS02450 0.59 +1.9 549,439 + RALBFv3_RS02450 0.59 +0.2 549,440 - RALBFv3_RS02450 0.59 -1.5 549,546 - RALBFv3_RS02450 0.70 -0.9 549,546 - RALBFv3_RS02450 0.70 +0.9 549,579 + RALBFv3_RS02450 0.74 +0.5
Or see this region's nucleotide sequence